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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010782 ID=TCONS_00010782|Name=TCONS_00010782|organism=Clytia hemisphaerica|type=transcript|length=1216bpRun BLAST on NCBI protein sequence of TCONS_00010782-protein >TCONS_00010782-protein ID=TCONS_00010782-protein|Name=TCONS_00010782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp STLKTKINISKMKNTIREECAYKNLSERFIYTDKRKFNLQYSQLYAIRLMRun BLAST on NCBI transcript from alignment at sc0000117:96954..116990+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010782 ID=TCONS_00010782|Name=TCONS_00010782|organism=Clytia hemisphaerica|type=transcript|length=20037bp|location=Sequence derived from alignment at sc0000117:96954..116990+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000117:96954..116990+ >TCONS_00010782 ID=TCONS_00010782|Name=TCONS_00010782|organism=Clytia hemisphaerica|type=CDS|length=10935bp|location=Sequence derived from alignment at sc0000117:96954..116990+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010782 vs. Swiss-Prot (Human)
Match: DPOD2 (DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1) HSP 1 Score: 376.326 bits (965), Expect = 5.431e-126 Identity = 194/390 (49.74%), Postives = 262/390 (67.18%), Query Frame = 1
Query: 64 YKNLSERFIYTDKRKFNLQYSQLYAIRLMVMRPKLETAAKKKWGDDINIVKLSDITRGEECIIVGTIFRKMELQPSVLKEISSEERVLAVPPTTKLASNDDELILEGDQQRIALTGSFPLSTAVTGTIVALSGKEIEGGKFEVADHCFASIPIMSNPSPKIQQDKYVLFISGLEIGSKQGNLLN-TQLLFDLIAGQLSMGEDTGRQ-----ICRVVIAGNTLSKDTQDKESEKVAKYLTKHVQAKTVDAIKTLDELLTQLGSCVPVDVMPGEYDPTNQFLPQQPLHKCMLPSAFSYSTVQSVTNPYDIEIDGRRILGTSGQNVANIYQFAGMEKRLQIMESNLNASHISPTSPDTLSCYPYFEKDPFVLEDCPHIYFAGNQPRLESKTIK 1215
Y N S+ F +R F+ QY+ +YA RL+ MRP LE A++ WG + + KL ++ E+C +VGT+F+ M LQPS+L+E+S E +L PP +K DDEL+LE + QRI L G+ +S VTGT++A+ G + GKF V D+CFA + P+P + D++VL +SGL +G G L TQLL D++ GQL D G Q + RV++AGN LS TQ ++S AKYLTK QA +V+A+K LDE+L QL + VPVDVMPGE+DPTN LPQQPLH CM P A +YST+Q VTNPY IDG R LGTSGQNV++I++++ ME L+I+E L HISPT+PDTL CYP+++ DPF+ +CPH+YF GN P SK I+
Sbjct: 32 YTNSSQPF-RLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADL-APQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLG---DEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIR 416 The following BLAST results are available for this feature:
BLAST of TCONS_00010782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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