TCONS_00010786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010786
Unique NameTCONS_00010786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010786 ID=TCONS_00010786|Name=TCONS_00010786|organism=Clytia hemisphaerica|type=transcript|length=1812bp
GTAATGGCAACACAACTGGCCGCTGATGAAATGTTCTACCGTGTTTGTTA
CTTCACCAATTGGTCACAATATCGACCTGGTAATGCTAAATATACGGCTA
AAAACATAGACCCTGGGCTTTGTACACATATAGTGTATTCATTCGCCAAG
ATTAATAAAGAAACAGTCAGTATGGAATTCACTGAGTGGAATGATGAATC
TACAATAAAAGAGGTGATGGCACTAAAGAAAGCAAAtccaaatttgaaga
ttttactCGGTGTCGGTGGTTGGAACCATGAAAAGAAAGATAGTCCTTTC
TCAGCCATCTCTGCAGATCAAACTACACGGATGATCTTTGCACTGAATGC
CATCTCACTCCTTAGGAAGCACAAATTTGATGGTTTGGATCTAGACTGGG
AATACCCAGCAATCCGAGGAGGCTCACCACCAGAGGATAAAAAACGTTTC
ACAGAGTTGTGTCGTGCATTGAGAGACAACTTTGACATGAATGCAGAAGT
TTCCTCGAACCCACGCCTCATACTTTCTTCAGCAGTTGGTGCATCAGATA
GAATCGTTGATAAAGCATACGAAGTCAGCGAAATCGCAAAATATCTTGAT
TTCGTTAATCTTATATCATACGATTTTTACGGTGCATGGAATAATTTTAC
GTATCATCCTACTCCAATGAATGGTTCTGAACTAACAGTACCGAAGGCCG
TTCAGTTATGGTTAGACCGTGGTATGCCTGCTGAAAAGATTGTTTTTGGA
GTCTCTACTTTCGGACATAGTTGGACACTTGAGGATAAAAGTCAAACAGG
TTTCTATTCACCAGCTATACTCAAAGAAGGTGGTGGTCAACCAGGACCTT
TCACCGGAGCTAAAGGTATATTAGCATATTATGAGATCTGTAATACCAAA
TGGGACAAAGTTGTAGATACAAACATTGCTTTAGCACCATACGCTTATAA
AGGTGATCAATGGGTGGCTTACGATGACCAAGCAAGTATCCAATTAAAAG
TCAAAGAtgttattattaaaaagaacTTAAAAGGCTTCATGGTATGGACC
CTTGATTTCGACGATTTTTCAGGACATTTTTGCGGCCGTGGTCGTTACCC
TATTATTAATGCTGTAAAAACGGCCCTCATGATTGAAGAGCTCAGACGTA
AATTTACtataacaacaacaacgaccacacAAAAAACGACATCGACCACC
CCTAAAACTACAGCTACCAAAACTACAACTACCACCACAACCACAACAAC
GACTTCTCCAACAAAGACAACTCAAAAAACGATAACGACCACTCCCTCAA
CGACAACAACCGTCCCAACCACGACAACAACCATCCCAACAACGACAACT
CCAACAACGACAAAGACCACTCCCTCAACGCCATCGACCGTCCCAACAGC
GACAACGACCACTACTTCCCCTGATACAACAAAGCATGTAGTAAAAGAAA
AAACCACCACCCCTAAAACAACGACCACTCTTGAAAAAACAAAGACCACT
TCCAAAAAAACAACGACTCCTTCCAAAAAAACAACGACTCCTTCCGAAAA
AACAACGACTACTTCCGAAAAAACAACGACTACTTCCGAAATAAAAACAA
CCATCGCTGAAAAAACAACAACCGCTACTGAGAggacaacaacaacgacc
acacAGACAGAAAAATCAACTGTCGAAACACGTCAAAACAGACCGACAAC
GCCACTGAAAAACCCTGGTACAAATGGAGAAACGAGCGATGCTATGACCA
GAACAATAAACATTGCAATGCTCTTGTTCTCAATGATTCTGGTAATCGTC
TCAATGTAATAT
Run BLAST on NCBI

protein sequence of TCONS_00010786-protein

>TCONS_00010786-protein ID=TCONS_00010786-protein|Name=TCONS_00010786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
VMATQLAADEMFYRVCYFTNWSQYRPGNAKYTAKNIDPGLCTHIVYSFAK
INKETVSMEFTEWNDESTIKEVMALKKANPNLKILLGVGGWNHEKKDSPF
SAISADQTTRMIFALNAISLLRKHKFDGLDLDWEYPAIRGGSPPEDKKRF
TELCRALRDNFDMNAEVSSNPRLILSSAVGASDRIVDKAYEVSEIAKYLD
FVNLISYDFYGAWNNFTYHPTPMNGSELTVPKAVQLWLDRGMPAEKIVFG
VSTFGHSWTLEDKSQTGFYSPAILKEGGGQPGPFTGAKGILAYYEICNTK
WDKVVDTNIALAPYAYKGDQWVAYDDQASIQLKVKDVIIKKNLKGFMVWT
LDFDDFSGHFCGRGRYPIINAVKTALMIEELRRKFTITTTTTTQKTTSTT
PKTTATKTTTTTTTTTTTSPTKTTQKTITTTPSTTTTVPTTTTTIPTTTT
PTTTKTTPSTPSTVPTATTTTTSPDTTKHVVKEKTTTPKTTTTLEKTKTT
SKKTTTPSKKTTTPSEKTTTTSEKTTTTSEIKTTIAEKTTTATERTTTTT
TQTEKSTVETRQNRPTTPLKNPGTNGETSDAMTRTINIAMLLFSMILVIV
SM
Run BLAST on NCBI

transcript from alignment at sc0000117:155145..163356+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010786 ID=TCONS_00010786|Name=TCONS_00010786|organism=Clytia hemisphaerica|type=transcript|length=8212bp|location=Sequence derived from alignment at sc0000117:155145..163356+ (Clytia hemisphaerica)
GTAATGGCAACACAACTGGCCGCTGATGAAATGTTCTACCGTGTTTGTTA
CTTCACCAATTGGTCACAATATCGACCTGGTAATGCTAAATATACGGCTA
AAAACATAGACCCTGGGCTTTGTACACATATAGTGTATTCATTCGCCAAG
ATTAATAAAGAAACAGTCAGTATGGAATTCACTGAGTGGAATGATGAATC
TACAATAAAAGAGGTTTGTAAAAAAACTAATCTATATAGTAATCACGTGA
CTGAAgcatagatatcttatataaaacactagacaGAGCTACTCTATCTT
TTCGATACCAAGGCAGATGAAGCAGAATAATGCGTCATCTTTATTGAGGC
CACAGTGGAAACCCTTGTTTTCACTGTTGAAGCATTTTTTGACACTGCAA
TAACTTAAAAGCTAGCAAGAtaatttgtgacgtcatttcaaTCAAGATGG
caaattattttgcttcaaatagGGTATAGgaaaagctctatctagtgttt
tatataagatgtCTGTGCTCTAAAGTCTTCCCAGAGCAGCCTTTTTgttt
tttcgctagcgattctAACTCTCGCGGCCTAGCTTTGTTTCGACGCTCGA
AGAAATCATTTTATATTTTGGCTCGTTTTATTTACAATTGGTCGTCCAAG
AGCTTTGATTCTCGTAATATAAAAAAGTGCAGATTACACTAGATACATAA
GATTCTTTGTAACTCGAACACTATTACGGGGAATGCAAATTTACTCAAGA
TATGAaaaacacaacgttgtttcaacgtttatctaacgttcacaacatcc
atataacgttatttgaacgttgaaacaacgttgtatgccagCTGGGAAGG
GACCTGAAGCTAAAAACGAATTAGAGAGGTTTAAGTTAAAGAGATTCAAA
GGCGCCTGTCATCGCAAGAAGAGTAAATCTTCTCTGTTCCTAGCAACTCA
GAAATATCTGAAAATATGGGAAATCAGATTagttgccttgatacatttcc
TAGCGAGACACTTATGAAAATATCACTACCTCAAAAGCTTAAACGATTGG
CTATGAATGACCTTCGATTACAGTGTCATCATTTAAACCGAGTGCCATAT
AACAAAACAAAGAATTAAAATCCCATCTGGCATACAACGTTTTTTAACGg
tcattgaaacaacgttgtaggGTGACTTGGGTAAGAAATTTTGTATCCAC
CAAGTTAGCACACTGCCTTGTTTTTACGTTATATGAATGTTAGGAATATC
AGATGGATGTTGTTACGACGTTAAGTGCCAGTTTAAGGCTAAAAGGATTG
ACCACAGGATACCATCGCAATAATGAAATTACAGTATGGCTTCCGACATG
GCACTAGGATGGTGTCCGATGCGATTACAATTTAAACCGGGCACCATGCA
ACAAAATTATGATCCAAAATAATTACGGAACTAAATAATCTGTTATGCTC
ATTGGCATAATACGGCTGAAGAAGTTAAATAAATTTCCCAGTCGGTactc
aacgttgtttcaacgttcatctaatgttatatggacgttgtgaacaacAC
ATAAACGTTAAACAACGCTCCATAGCTGGTTATGGAACGGTGAACTTATG
TAGTCTTCTATTTTTCCAACAACTTAAACATCTCTCTAAAAATATGCGAA
ATCATATTAATTGCCTCGATACATTTCCTACTGAAATACTTATTAAGGTA
TCGCTACCTCTTCGAGGCGTAATTATTGGCTTTTAATGACCTCCGGCATA
ATACCTCGGAGTCTCTGTTTCGAATACCATTTGATTCAGGTGTCATGTAA
CAGAATCAAGAATCAAAAAGAATAACTCCCAGGAACTATTAGAACCCTAT
ACTGACTCCATAGTCATAATACGGGTGAAGAAGTTAATTCATGGGTTATT
ATCAatcaaaattgggtacggggacgtgccgctggtcagggtcacttttt
taggcactgaagatatctgacagggtccaaacTAATTTTTAAGATGTGAA
TCTGACAGAGTCGACTTCTGGTTATTTTAGACAATTTccagggtggaaat
tagaaaactACAAAATTTGTCATCTAATTTCAGTTATTTTTTAGTGATTA
TTGCCAATTttcatggtgaaaataagactgattttgtttttttgttctgA
CAGGGCCCAATTTTCAAACTCGAGCGAGTGGCACGTCCCGGTCGGctgtc
aaggtcagtgccccctcGGAAGTTAATTCCATGGAAATATGGATTAATTC
CCTCGATACATTTCCTAGCGATACACTTATGAAAATTCCTTCCCCTTGAA
AATTAGTTATTTGACTTTGAATGACCTCCGGTATGGCACTCGAtgtccat
ctctgtctccgttTTAATTACGAGTTAATTCAAACGCCATgcaacaaaat
gaaaatcaaaaagaatcaCGCCAAAGAACTATTAGAATTATATATATGTA
GTCAATATCAGTGTAGTCATAATACAGTTGAAAAAGTTAATTCAAGGCCT
AAATCTACCAATAAGTTTTTCGTGAAAATATGCAAACTCCAAATGCTTCG
ATACATTTCCTAGCGAGAATccttatttttcaaagaataatTATTTGACT
TTGAATGACCTCCGGTATGGCACTCGAtgtccatctctgtctccgttTTG
ATTAcgagttaagggctctgaccatagtcagaaaattgattttagtattt
gaacataaaagttatgttttaggttctttaacactttcaacaaagaattg
cctttataaattgctttttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatccaga
tgaaaaattgatgaaaaaccactattttgaagatttcaagacaaagaagc
atttacaaaaattttccgcaaaaatttttattgttcgctaaaagatacac
catctactcatctacttcgaaaaaaatttcaaaatgttttttcttcgccg
aaactaagctcttcaaagttgaaatactcttcctcgcaaaagtcttcctt
ttcttcttcatcaaattttttcattgcaatttttgaattttcagattcag
gaatagtttgtctaagagaaaatgtataacatgccatagttttgttggtt
acatcagtcagaaaacacattttaaacacggcaattatgaaaaattcact
atggtcagagcccttaattcaAGCGccatgaaaatctgaaaaattaatCC
CAGGAACTGACAGAATCCTATATTAACTCCATAGTCATAGTACGGTTGAA
GAAGTTAATTCAAGGCTTAAATCCTGAAAATATGCAACCTCTGATTAATT
CCCTCGATACATTTCCTAGCGATACACTTCTGAAAATTCCTTCCTCTTGA
AAATTAGTTATATGGCTTTGAATGACCTCCGGCATGGCACTTGAtgtcca
tctctgtctccgttTTGATTACGAGTTAATTCAAGCaccatgaaaatcaa
aaaaaataataataatcccAGGAACTGGAAGAATCCTATACTGACTATAA
TACTATAGTCATTGTTGAAGAAGTTAATTCAAGGCTTAAATCCTGAAAAT
ATGCAAGCTCGGATtaattgccttgatacatttccTAGCGAGACATTTAT
GAAAGTTGCTTCCTTTTCAAGGCTTAACTATTGACTATGAATGACCTCCG
GCTAGGCACTCTGTATCCTTCGTTGTCTCCGTTTTACGATTACGATTTAA
Gctaatagcgcaccgcgctgaatctaaaaatagattttatttttgacata
atcattactctcgatgtgtttgtacgagttccaatcccatcaacctttgc
gctaatctcttttgcacgtttaattgcatcgtttgacaaaagatatataa
cagataacagcttgcacgtatctttaattgagccgcgttgaattgtggga
ttggaactcgtacaaatgtcaaaaaaagtgaaaaggaaTAATTATGACAT
ATGCGTTGCGGAGCACTATTACCATGCTACAAAATGCAGAGATAAAATCC
AAAAGAATTACGCCCAAGAGGTCAGGATAATTACACGCCATTACAGTATA
ATTATCTTTATAAGTTAATTAGCCAGGATTtaaaaattaatccaattaCG
AAAAATGATGCAAAACATTACGTGGTTGGCATGTAGTTTTTACTTCCTTG
GCCGCTTTTATTTCAAAAGTAGATTATGAACTGTAAATCACGTGACTTTC
CTCGTCATAATGACGCTATTTCTTTACTTGAAGAAAGAAGGCTTCCCCTT
TAGAATTCAACTCAATTCAGCCAAGATTTGGTAATTGGacttcagctttt
caaaatggtaccGAGCCGGGGGCTACTTAAAAAggcagtctctctaagga
taacaaaatcaacaaaaagtaaaaaatagtctctttaagggtcggGATTT
CCCTTTCTCTGGTACTTTTAAGGGTAAGAAAACCATAAAAaccataaaaa
ttaaaaaaggttagcataaatttttcgaaagttgtttctctaagggtcac
tttttcacagCAAGAATTTAGTCTCATTATAAGTAGCTTCAGGTTATTCG
GAATAGACTCCTTTTTCCTCGGAAATTCAAATAACCGAGAATCTACTGTA
CTATGAACTAAGAGATGGAATAAAGAggtaagctctagtttagacggttg
actttctgccctgcctattctaattgttagagtaggcagaaagagagcac
aaagttggttgttaaaatctttgcttggaaaggtttgaaagaagacattg
cattgacgtcaaaagagggctatgcttcgactttagacagcccactttat
gccaactttaatccacaattagaataggcagggcagaaagtcggccgtat
AAACTAGAGCTAAAGGAGCTTTGAATTGTCCTATAAAATAACTCTTAACC
ATTTGCTAATATGCTATGTATTATCAGGAATGAAAAGGTAAATGGGATGA
ACAGGCCCATCAAAGTGGAGGTGTTTNACTAATATGCTATGTATATCATC
AGGAATGAAAAGGTAAATGGGATGAACAGGCCCATCAAAGTGGAGGTGTT
TTTTGCGAAAATACCAATTTAAATAACATTCTATTTTACAGGTGATGGCA
CTAAAGAAAGCAAAtccaaatttgaagattttactCGGTGTCGGTGGTTG
GAACCATGAAAAGAAAGATAGTCCTTTCTCAGCCATCTCTGCAGATCAAA
CTACACGGATGATCTTTGCACTGAATGCCATCTCACTCCTTAGGAAGCAC
AGTAAGCAGTCAAATTTTAAACGCTTCTTTGTAAAAAGGGTAAAAGTAAA
ACGAGGcagaaatttcatcaaattgcAAAAGCAGGAACTAATCTATACTC
AGGAAGAAGGAACTTCTCTTTAACCAATATAgttattttaaggctttaaa
tTATTGTTGTCTGGAGTACGCGGGCGGTTCTGGAAATATTTGGATCTGTT
TTTATACTTATTATTGATCATGCCTCATTTGgttgttttttgtgttttac
attctttgaaaaatattgaagtcgACATGTCCTTTATCACGagccaatca
atcaatcaaccatttAGCCGTAACTGAGAAGTTACATTGGCTAGTCCTAT
GGCCCGGGGGTAGGATTGTTGTAGCAAATCTTACTTCGTTTGAGGTGAAG
CCAACACAGTGCAGCCTGGTTACCAAAGACCCGTTATTGACCCACTAGTT
GCAGAAGTTCTTAGTAGTACTAATTAACTGACCGAAATTGGATAGAGAGC
TGAGTTGGCTCTGGTCACGAGATACGGATTGATGACATATGACATCTCCG
GAAATCGAACCCGCTCGCTTATCACGAATGCGAATTTCGTTTGTTCAGAT
ATAACTCGATTGTACAAACAACCTAAATAAATTTATCTNCTTATCACGAA
TGCAAATTTCGTTTGTTCAGATATAACTCGATTGTACAAACAACCTAATA
AGTTTACCTTATGTTTTCAATTTAGAATTTGATGGTTTGGATCTAGACTG
GGAATACCCAGCAATCCGAGGAGGCTCACCACCAGAGGATAAAAAACGTT
TCACAGAGTTGTGTCGTGCATTGAGAGACAACTTTGACATGAATGCAGAA
GTTTCCTCGAAGTAAGATTATTATATGATAGAGTAAAATGCAAACACAGC
GGGGTCTTCGTAACTTGAAAACGATAGGACCACATATTTATTCGAGTTAC
GGAAATTTCTAAGAGAATattaaagagacattcgagttatagaggttcga
gtaaaagagactccactgtgaTCTCCTTCAAGACAACGGAGACCGTAAAA
TTAAATCATTAATAAGCCCTAGATTTGAGGGTGGTAAATGAATGTTTTTC
AATTCCGAAGAATTTCCAAATATTTCTCACTAGCGGAACACGTTGAGttt
gacaaataaaaatatCCATCTTCAAAAGAGGGCCTATAAAGGGTTTAATA
GAATGGGAGTGATCCGACACTATCTTGAAGAACTCGaccttttggaattt
tttatgaGTGGTGACTGTCCACTGTTAATATACCTTTAATATATTCTTTT
CAATTCCAGCCCACGCCTCATACTTTCTTCAGCAGTTGGTGCATCAGATA
GAATCGTTGATAAAGCATACGAAGTCAGCGAAATCGCAAAATATCTTGAT
TTCGTTAATCTTATATCATACGATTTTTACGGTGCATGGAATAATTTTAC
GTATCATCCTACTCCAATGAATGGTTCTGAACTAACAGTACCGAAGGCCG
TTCAGTTATGGTTAGACCGTGGTATGCCTGCTGAAAAGATTGTTTTTGGA
GTCTCTACTTTCGGACATAGTTGGACACTTGAGGATAAAAGTCAAACAGG
TTTCTATTCACCAGCTATACTCAAAGAAGGTGGTGGTCAACCAGGACCTT
TCACCGGAGCTAAAGGTATATTAGCATATTATGAGATCTGTAATACCAAA
TGGGACAAAGTTGTAGATACAAACATTGCTTTAGCACCATACGCTTATAA
AGGTGATCAATGGGTGGCTTACGATGACCAAGCAAGTATCCAATTAAAAG
TCAAAGAtgttattattaaaaagaacTTAAAAGGCTTCATGGTATGGACC
CTTGATTTCGACGATTTTTCAGGACATTTTTGCGGCCGTGGTCGTTACCC
TATTATTAATGCTGTAAAAACGGCCCTCATGATTGAAGAGCTCAGACGTA
AATTTACtataacaacaacaacgaccacacAAAAAACGACATCGACCACC
CCTAAAACTACAGCTACCAAAACTACAACTACCACCACAACCACAACAAC
GACTTCTCCAACAAAGACAACTCAAAAAACGATAACGACCACTCCCTCAA
CGACAACAACCGTCCCAACCACGACAACAACCATCCCAACAACGACAACT
CCAACAACGACAAAGACCACTCCCTCAACGCCATCGACCGTCCCAACAGC
GACAACGACCACTACTTCCCCTGATACAACAAAGCATGTAGTAAAAGAAA
AAACCACCACCCCTAAAACAACGACCACTCTTGAAAAAACAAAGACCACT
TCCAAAAAAACAACGACTCCTTCCAAAAAAACAACGACTCCTTCCGAAAA
AACAACGACTACTTCCGAAAAAACAACGACTACTTCCGAAATAAAAACAA
CCATCGCTGAAAAAACAACAACCGCTACTGAGAggacaacaacaacgacc
acacAGACAGAAAAATCAACTGTCGAAACACGTCAAAACAGACCGACAAC
GCCACTGAAAAACCCTGGTACAAATGGAGAAACGAGCGATGCTATGACCA
GAACAATAAACATTGCAATGCTCTTGTTCTCAATGATTCTGGTAATCGTC
TCAATGTAATAT

Coding sequence (CDS) from alignment at sc0000117:155145..163356+

>TCONS_00010786 ID=TCONS_00010786|Name=TCONS_00010786|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000117:155145..163356+ (Clytia hemisphaerica)
GTAATGGCAACACAACTGGCCGCTGATGAAATGTTCTACCGTGTTTGTTA
CTTCACCAATTGGTCACAATATCGACCTGGTAATGCTAAATATACGGCTA
AAAACATAGACCCTGGGCTTTGTACACATATAGTGTATTCATTCGCCAAG
ATTAATAAAGAAACAGTCAGTATGGAATTCACTGAGTGGAATGATGAATC
TACAATAAAAGAGGTGATGGCACTAAAGAAAGCAAAtccaaatttgaaga
ttttactCGGTGTCGGTGGTTGGAACCATGAAAAGAAAGATAGTCCTTTC
TCAGCCATCTCTGCAGATCAAACTACACGGATGATCTTTGCACTGAATGC
CATCTCACTCCTTAGGAAGCACAAATTTGATGGTTTGGATCTAGACTGGG
AATACCCAGCAATCCGAGGAGGCTCACCACCAGAGGATAAAAAACGTTTC
ACAGAGTTGTGTCGTGCATTGAGAGACAACTTTGACATGAATGCAGAAGT
TTCCTCGAACCCACGCCTCATACTTTCTTCAGCAGTTGGTGCATCAGATA
GAATCGTTGATAAAGCATACGAAGTCAGCGAAATCGCAAAATATCTTGAT
TTCGTTAATCTTATATCATACGATTTTTACGGTGCATGGAATAATTTTAC
GTATCATCCTACTCCAATGAATGGTTCTGAACTAACAGTACCGAAGGCCG
TTCAGTTATGGTTAGACCGTGGTATGCCTGCTGAAAAGATTGTTTTTGGA
GTCTCTACTTTCGGACATAGTTGGACACTTGAGGATAAAAGTCAAACAGG
TTTCTATTCACCAGCTATACTCAAAGAAGGTGGTGGTCAACCAGGACCTT
TCACCGGAGCTAAAGGTATATTAGCATATTATGAGATCTGTAATACCAAA
TGGGACAAAGTTGTAGATACAAACATTGCTTTAGCACCATACGCTTATAA
AGGTGATCAATGGGTGGCTTACGATGACCAAGCAAGTATCCAATTAAAAG
TCAAAGAtgttattattaaaaagaacTTAAAAGGCTTCATGGTATGGACC
CTTGATTTCGACGATTTTTCAGGACATTTTTGCGGCCGTGGTCGTTACCC
TATTATTAATGCTGTAAAAACGGCCCTCATGATTGAAGAGCTCAGACGTA
AATTTACtataacaacaacaacgaccacacAAAAAACGACATCGACCACC
CCTAAAACTACAGCTACCAAAACTACAACTACCACCACAACCACAACAAC
GACTTCTCCAACAAAGACAACTCAAAAAACGATAACGACCACTCCCTCAA
CGACAACAACCGTCCCAACCACGACAACAACCATCCCAACAACGACAACT
CCAACAACGACAAAGACCACTCCCTCAACGCCATCGACCGTCCCAACAGC
GACAACGACCACTACTTCCCCTGATACAACAAAGCATGTAGTAAAAGAAA
AAACCACCACCCCTAAAACAACGACCACTCTTGAAAAAACAAAGACCACT
TCCAAAAAAACAACGACTCCTTCCAAAAAAACAACGACTCCTTCCGAAAA
AACAACGACTACTTCCGAAAAAACAACGACTACTTCCGAAATAAAAACAA
CCATCGCTGAAAAAACAACAACCGCTACTGAGAggacaacaacaacgacc
acacAGACAGAAAAATCAACTGTCGAAACACGTCAAAACAGACCGACAAC
GCCACTGAAAAACCCTGGTACAAATGGAGAAACGAGCGATGCTATGACCA
GAACAATAAACATTGCAATGCTCTTGTTCTCAATGATTCTGGTAATCGTC
TCAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006059XLOC_006059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010786-exon-sc0000117-1491911889:155145..155357TCONS_00010786-exon-sc0000117-1491911889:155145..155357Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1510915933:155145..155357TCONS_00010786-exon-sc0000117-1510915933:155145..155357Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1575043694:155145..155357TCONS_00010786-exon-sc0000117-1575043694:155145..155357Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1491911889:160586..160745TCONS_00010786-exon-sc0000117-1491911889:160586..160745Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1510915933:160586..160745TCONS_00010786-exon-sc0000117-1510915933:160586..160745Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1575043694:160586..160745TCONS_00010786-exon-sc0000117-1575043694:160586..160745Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1491911889:161470..161605TCONS_00010786-exon-sc0000117-1491911889:161470..161605Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1510915933:161470..161605TCONS_00010786-exon-sc0000117-1510915933:161470..161605Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1575043694:161470..161605TCONS_00010786-exon-sc0000117-1575043694:161470..161605Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1491911889:162054..163356TCONS_00010786-exon-sc0000117-1491911889:162054..163356Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1510915933:162054..163356TCONS_00010786-exon-sc0000117-1510915933:162054..163356Clytia hemisphaericaexon
TCONS_00010786-exon-sc0000117-1575043694:162054..163356TCONS_00010786-exon-sc0000117-1575043694:162054..163356Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010786-proteinTCONS_00010786-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:155145..163356 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0596927	0.023585	0	0.0799157	0.0186503	0.0231014	0	0	0.632932	1.08532	2.13645	0.917094	9.96869	8.22515	0.117635	0.147715	0	0	0	0	0.095049	0.0424145	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011583Chitinase_II
IPR001223Glyco_hydro18_cat
IPR001579Glyco_hydro_18_chit_AS
IPR029070Chitinase_insertion
IPR017853Glycoside_hydrolase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0008061 chitin binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
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BLAST of TCONS_00010786 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 4.227e-106
Identity = 170/375 (45.33%), Postives = 227/375 (60.53%), Query Frame = 1 
Query:   43 VCYFTNWSQYRPGNAKYTAKNIDPGLCTHIVYSFAKINKETVSMEFTEWNDESTIKEVMALKKANPNLKILLGVGGWNHEKKDSPFSAISADQTTRMIFALNAISLLRKHKFDGLDLDWEYPAIRGGSPPEDKKRFTELCRALRDNFDMNAEVSSNPRLILSSAVGASDRIVDKAYEVSEIAKYLDFVNLISYDFYGAWNNFTYHPTPM--------NGSELTVPKAVQLWLDRGMPAEKIVFGVSTFGHSWTLEDKSQTGFYSPAILKEGGGQPGPFTGAKGILAYYEICNTKWDKVVDTNIALAPYAYKGDQWVAYDDQASIQLKVKDVIIKKNLKGFMVWTLDFDDFSGHFCGRGRYPIINAVKTALMIEEL 1143
            VCYFTNW+QYR G A++  K++DP LCTH++Y+FA +    +S   TEWNDE+  +E   LKK NP LK LL +GGWN   +   F+ + A    R  F  +AI  LRK+ FDGLDLDWEYP  +G SP  DK+RFT L + L + F   A+ S   RL+LS+AV A    VD  YEV +IA+ LDFVNL++YDF+G+W   T H +P+          + L V  AVQ WL +G PA K++ G+ T+G S+TL   S T   +PA    G G PGPFT   G+LAYYE+C+ K            PY ++ +QWV +DD  S + KV   + +K L G MVW LD DDF+G  C +GRYP+I  ++  L +  L
Sbjct:   25 VCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLST--TEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQK--FTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT---GSGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELSLPYL 390
The following BLAST results are available for this feature:
BLAST of TCONS_00010786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT14.227e-10645.33Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
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