TCONS_00010823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010823
Unique NameTCONS_00010823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010823 ID=TCONS_00010823|Name=TCONS_00010823|organism=Clytia hemisphaerica|type=transcript|length=1478bp
GCACGAGGCAACTGAAAATTTGCCGCCAAAATTTTGTAGCCAAATAGAAG
AAAATTGTGGAGCAATCTCTTAAAAACGGGAAAGATTATCaagaaaatcg
gggaaaatcgggaaaattggaaaagaaacaaacaaaacaattcaagatgg
cggacttTCAAGGTGCCCCAGGAGAAGTATTTGCTgctgaaaaaatcctt
aaaaagcGCTACAAAAAGggacGCGCAGAGTATTTGGTTAAATGGCAAGG
ATATTCATCAAAATTCAACACATGGGAGCCAGTGGAGAATATTTTAGATG
AACGCTTATTGGAAAGCTATAAAGCCCTTCACCCACCAGGAAATCGCGGT
AAAAAGAAGAGAAGAGGTGGCAATGTGAAGTCTATCACCCCCAAAAAACC
TAAGTTAGAGCAGGTTTATGTAAAAGAAGAAGCGACAGAacacgaagaag
aagaagatgaaggaGATACAACTGTTGAAGAACCGCCACCACCACCGCCC
ATGGTGATGGGCGAAGTAGAAGGAAGTGTGATCGAAGATATTGAACATGG
TACCGAAGATGAAGATGTAGATATTTTGAATGACTCACAAGATGAAGATC
GGAATACAGAACCAACTCTCGACCGATTGAACAGTTCCAATAATGAAGCA
CCTTTATCGCTGAGGATCAAAATTGAAGAACAACCATcgtcatcaaaaat
attaaCTAACCGAAAAAATGGTTCAAAATCATGTCCTGTTTCACCTTCGC
CAAGGCTTGTCTCTGCAGAAactaaaaaatcaaccaaagcAAAGACTATT
CCTGCAGATGTAGCAATTCCCAAGCCCAAAGATGTTCCCAATAAACTAGA
AAATATCGAAGTTCCAGAATCAAAAACAACAATACTCACTACTAAGTCAA
CAGCAGATAATGCAGAATCGGAGATGAAGTCTACCACTGAAGCCACTCTT
TTACCGAAGACTGACATTACGAAAATTAAATGTGATTGCTTGAAACAAAG
GCCATTGATTGATCAGATCACATTGACTGATATCACCAAAGGTGGAGTGA
CAGTTACTATCAAAGAATGTTTCACAGATAAAGGATTCTTCCTGGCAACT
TCATGATCGACgagggtttttttttaatcttttattacaataaaaacgaa
aattttaaTGGATCAAATGGTGATTGGTTCATTTTTATCAGTTGGGAGAT
GCAGTTATTGTCTTTGAAGTGAGAATATCATCCTCTTCTTCCTTTTAACT
TCTTAAGAGaggttttataaaaaagtatagTAAATGGTATATCGCAGTTG
ATCGGTGGATATTACACCGATGATGAAATAGGTCATTATTTTACTGTTTA
CCCAGTAAAGATAGCAATTAAAAGGATTCATTACTTTAAAAAGAAAGTGT
TATTTAATTGTTATTGCAATTATAAAGAAGAATTAATTGAGTTTTTACGA
AGATGTTTTATCATAAAATCAAAAGATG
Run BLAST on NCBI

protein sequence of TCONS_00010823-protein

>TCONS_00010823-protein ID=TCONS_00010823-protein|Name=TCONS_00010823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MADFQGAPGEVFAAEKILKKRYKKGRAEYLVKWQGYSSKFNTWEPVENIL
DERLLESYKALHPPGNRGKKKRRGGNVKSITPKKPKLEQVYVKEEATEHE
EEEDEGDTTVEEPPPPPPMVMGEVEGSVIEDIEHGTEDEDVDILNDSQDE
DRNTEPTLDRLNSSNNEAPLSLRIKIEEQPSSSKILTNRKNGSKSCPVSP
SPRLVSAETKKSTKAKTIPADVAIPKPKDVPNKLENIEVPESKTTILTTK
STADNAESEMKSTTEATLLPKTDITKIKCDCLKQRPLIDQITLTDITKGG
VTVTIKECFTDKGFFLATS
Run BLAST on NCBI

transcript from alignment at sc0000117:255343..272948-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010823 ID=TCONS_00010823|Name=TCONS_00010823|organism=Clytia hemisphaerica|type=transcript|length=17606bp|location=Sequence derived from alignment at sc0000117:255343..272948- (Clytia hemisphaerica)
GCACGAGGCAACTGAAAATTTGCCGCCAAAATTTTGTAGCCAAATAGAAG
AAAATTGTGGAGCAATCTCTTAAAAACGGGAAAGATTATCAAGAAAATCG
GGGAAAATCGGGAAAATTGGAAAAGAAACAAACAAAACAATTCAAGATGG
CGGACTTTCAAGGTGCCCCAGGAGAAGTATTTGCTGCTGAAAAAATCCTT
AAAAAGCGCTACAAAAAGGTATATCCAATGCTTCATTATCTTAAGAAATT
TCTTTGATTACCAGGTGATGTCCAGGAAAGTACTCCTAGCAATCTTTTGG
AACTGAAAGACTGATCGAAATCCAGTTTAGGCACTATATATCTTAAAATC
TCACAACAAGCAGTTGGGTGTTTAAACTTTAAACCAGACGTCCGCGCTTG
ATAGGATCGATCATCGGAACGGCTCGATGACGGATCGATATGTGATCAAT
GGATTACTTAACGATCCGGATGGGAGATCGATGGAAGATTCAGCCATTAA
ACCAGACGTCCGCGCTCCTCGATAGGATCGATCATCGGAACGGCTCGATG
ACGGATCGATATGTGATCGATGGATTACTTAACGATCCGGATGGGAGATC
GATGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNATCCCAAGTATTTCTTTACTTATAAAAGGGACTCTGGTCA
GCAACACATCCCCCTCTTGCCTGAGTGCCCTAGGGAGTCCTTCAAAAAAA
AATTCAAACCCTCAGATNTATCCCAAGTATTTCTTTACTTATAAAAGGGA
CTCTGGTCAGCAACACATCCCCCTCTTGCCTGAGTGCCCTAGGGAGTCCT
TCAAAAAAAATTCAAACCCTCAGAACTTGAAATGGCTTCCCTAAAAAATA
GAATACTGGAATATATCATGATATAGTTGACCTGTTCATCCGCCCGAATA
TCTTCGCATTGAAAAATAACACTTACTTGTTAAACGGGGAAGAATTTTCA
TCAGCTTTCGAACTATGGTTGGAAGAGCCATGTCTAAAAAATATTAGACT
TTCTCATTACTGAATTGTTACCNGGTTGGAAGAGCCATGTCTAAAAAAAT
ATTAGAATTTCTCATTACTGAATTGTTACCACAAACTCCATTTAAATCTC
AAGCAATGACTTTTTTAAGAATTTACTGAAGGCTACAAATTCTTGTTCAC
AGCCTTCAATGTACTGAGCTACAAATATTTGTGATTTTTACAGTTCGGCC
ATCCTGTTTAACAGGCATCTTTCAACATCTGAATAGTTAAACAGACATTC
GGTACTTANCAGTTCGGCCATCTGTTTAACAGGCATCTTTCAACATCTGA
ATAGTTAAACAGACATTCGGTACTTACTTGACTTGCGGTGTAATCTGAGT
GAATTGTCAATTCTGAATTCTTTGTGCATTTTAGCTTTTGTTGGGGTTGA
ACCTGTCAAAAAAGNAATTTTGAATTCTTTGTGCATTTTAGCTCTTGTTG
GGGTTGAACCTGTCAAAAAAGAATGAATATCAAAAAATATTTTTCATTTT
ATATTGTTCTTTCCTGAGTGGGAAGGGAAGCAGGGTACGCATGTTTTACT
GGATTCTCTTTCTTGAGCTACACCCATCCAAAAACTATCAGTTATTCCTT
TATGAACCTATATAAGTAAAAAAAATTATCTAACTACCTGAATGACACAC
CACGTAACCTAATTTCAGACGTTTCTAAAGCATAGTAAGTAAGGAAAATC
TAGTTACTAGGCCGGCCCAAAAAAAATGTTTCCTGTCTAATGAGTGCAAT
AAAAAAAGTTATTTGAAAGACAAAATCGGTAGAATTGCAATTGAAGCATT
GCATAGTGCACTTTACGAATCTCATGAAAGATTNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCCTTCAGACAAAA
TATGACAAATCATGCAACTGTGTTCGGACAAAAAAGCAGTCATAGTAGAC
AAATTTCCACGCTGGATTCCGACTGTTGTTGTTGAAGTAGGTGTTGTACT
CTAGTGAGATACACCCCAAACAAACACTCTCATATTCTAGCTCTACTAAA
GGTTAAAAATTTCCAGGAAACAATTTATTGGGATTACTTTATAGACTTAC
TTGCAAAGATAAATAACTGAGATATATTTTTGACACTTAAGTTCAAAGAA
CACTCTGAGGCTGAGAAAAGACAAAGAGATTGATCAGAAGAAGCATGAAT
CAAACCAACTTCCCCTGCCCTGTGAAATTTATTAAGAAAATAAATAATAA
TAATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNTAGTTTTATATGGTGTAGAATAATTCTCAATTGAGTAGTCTTGA
TCTTTTCTCTCAGAGATCCGTTTGGTGTTGACTTCGGTGATCGCAATTAT
ATGAGGTTGTTCATTAGCGACGTGCTTTAAAAGTTCTTTTTTCTTCTTAG
ATGTCATTTGGTCTGCATTTGTGTAGATGATAGTAAGTTCACTAATTGTT
TTGGTTGTGTTTTTTGAATCGTTTTTGTTAGGTGGGTTTTCATTCAAGCT
GTCGTTATCGTTATCGATCGGTTTTATTGATTGATTGGGTTGTTGTATCG
TTTTTGTGTTTTGTTGTACACCTTCTTTATGTCGAAGCCGTTTTTTGACG
ATCCTCCAACCCGATAAATAAATTCATCGGTTTCTAGGTCATCATTTAGG
TCTTTCGCCTGTTGTGATAGCTCTTTATACTTTTCACGTTGGGACCTACA
CAGGTCTTCTGTGATACTTATGCCGTTATAAGTATCGTTACCTTTAAGTG
ATGGGAGATTTCCCATGATCTTAAGTTTATCATCTTCACTATCGAGGCAA
ATTAACAGTGGACGATTTGGTTTCTTACCTATNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTTTCCTTCTTGGGGACCAGTTCGAGCAGCTTGGGTTCAAC
TTCAACGCAGTTGATACAAATGTATTTCTGGGTTCTGTTGGCTTTGAGTG
TTTGAATATGGAATGCAACATTTGTAGTGAATGGATCTCTTACATTTTGC
ACAGGTTAGCGAATCTGAATCCCTGTCGTCAACACATCGATTTTCGGTGC
ATATAATGATATCTTCTTTCATTAAGATTTTCTAAGAAGCAGTAGATTGT
TTTGGCCTTACGGATGATGCAGCCGATGCCATTTGGTCAACTAGTTGGTT
GTAGTAGTTGAATTTGTTGGGAAAAAGCAGCTTTTTAAGTGTTTTTAATA
AGATTTTCCATTCCATAAAAAATGATAAAAGCATACCTTTTTTTCTTCAT
CCAGTCATAGTCATTCCCTTTGGAAAATTGAAGGCGATTTTCTTCATCCA
GTTGTCAAAGTAAAATGAGAAGTACGAAATGACGTGACCTGCCATCTTGA
ACTCTCTCGCAGAAAGAAAAAAAGCGCGCTCTAAATTCCCGATCGTGAAA
AAAATATTTTTGCGGACGCGAAGGACCACTCAAAATCGTCCAATAACCCG
AGTTCTTCAGGTAAGTGCTCGGTGCGCAGGCGCGCACTAACCTGGGTTTC
CCGACTTTTAAGGTAAACCCGAAATACTCGAAAAAACAACAACCTGAACA
ACCCGTGAATTCGGGTTAACCCGATTTACTGGAAACGAACCGGACTTCCA
AAAATAGCAATTTCAGGTAAGGTCGGGTGAACCTGATACACCCGAAATTG
AACCCGAGTTGATTTACCAGAGATGGGAAGCTTTACTGAAGGAGGGATAA
GGCTGGGACTATCTATTTAAAAGATATGGACAAAAAAAAGGCAATTTTTT
GGGTGATAATTAAGATTTTACTTAGAAACTTTAATTCTCTTACCCCCGTC
TCGGCCCCTCTGATATGAGCAAGGGAACCATGTTGGCCACCCCTACCAGC
CCCTACTGTAAATTTCAGATCAAAACAAACAAGGAATTAATTCCTGTAAC
TCGAAGAAAATTGGGAAAAGCTGGTTTTTGACTGTTTCTGATCCTAAAGT
GCTATTTTTTGGTAAAAGCTATGCAATTTATGTTTAGATTTCTAGAAAGC
TTATCCATTCATTGTCAATATATTTTTTATTTGAAAGTATAATCTCTTCA
TGGAATAAAAAGATATAGTTAAATCTTGTAGGGTCATTTTTCAAAAAAAA
ATTTCCAAATTCGATCTTCGCACTTCGCCATTTTACCCTACGCAAACGCA
CGTGTTACCATTATATACTTAAAATAGAATTTATAGACATTTATAGTGAA
TATTCCAACATTTTGTACTTGACAAAAAATTTCAAATTGATTGAAGCAGT
GAGCGTGAAGCACTGAGCAAGAGAAGGGAGCTCGTTTGGCTGCTCAAGAC
TTGAGCAGCGAAATGCAAATCGCTCAAAATTGTAAAAAATCACGAAAACG
AGCTCCCTTCTCTTGCTCGGTGCTTCACGCTCACTGCGTCAATCAATTTG
AAATTTTTTGTCAAGTTTCGAGAAGTATTGAAGATGTAATTTACAGAATA
AGATACAAAAACTAACAAGTTATGATAAAATTGTTCAGCCTTGTCAAATT
AATCCAAGTCGATCGCAATTCCTTGTTGCTGAAATTTTAACACTTCAATT
ATTTGCCGGATGCATGTCACTAGTCCGACACTTTCTTTTCCGACGGTAAA
ATAGTCCGAATCTATAAAATAAATTTACAATTTAGAAGTCTTTTTTTCCG
ACGTCACTTTTGTCTGAAAAAGGGCTTTTCGCTGAGATAATATTAATAAA
AGTTCATTATGGTGGCATTTTGACATAATGAGAAATAAAGGACCAATCAA
ATTTGCTTTATTTGGACCAATAAAATATAATTTATAGCAAAAAGAATGCA
CCTTTTTGCATGTTCAGAATTATGCCGGCAAAAATTGGAAAATTGGCGAA
AAATTGGTCAAAATTGGAAAAAAATGACCTCCTTCAGGTACCACCGTTAA
GGGTTGTAAATCACAAACTTTAAAACCAGCCCCCCCCCCCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCAA
AAAAAAAAAAAATAAGAAGGGTCGTAAAACAGCTAAATCCAATTTCTTGA
CTCTTGAAAGTAATCCTAATAAGCTTCCCAAAATTTAATAAAAGTTAGGT
GGTTTAGGGGCCCAACCTCAAAGTCGGAACTTTGGATTTGTGTCCCCTCT
TTGGCGATTCATATTTCGCATATTTCGTTTTATATGTTGTTTATTTTTAC
TCGTTGTTGGAAAAAATTGTTGGAATACTGACGTATTTGTCAAATCCAAC
GTCAAGCATTTTTACTGTCGGACTAGAGTCTATTCACGATAAGTGTGCAC
TCTTTTTTCTTTTACCTCTAACTTTTGAAGGAATACTTCAATCTTTTTAA
ATTTGGTATCGCTGGAAAGATATTAAGTGGAACAATTTAAAATAAAAAAA
TCTTTAAAAAAATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAATG
AAGATCTTGTAGAAAAGTGCTATAACTTTCATTTTCACTTGAGAGATTCT
TTGATCTTAGAAGGTCATCACTGTGAAGAAATTTCACTAAAATATTTATT
CAGTATAAAGTTATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACA
GCAGAAAACAGCGTTTTTAGGCGGCAATTAGCTTATAACTTTATTTGATA
TCTTTTAACTGAATGATTATTTTTGAGAAATTTTTTCACAGTGATGACGT
TCAATGATCAAGGATTCACTTCAGTGAAAATTATAGTTATAGCACTTTTC
TACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAAT
NTTTTAGTTCCTCGTAGTAACTATACTAATTACTATAATAGTTATTTGAG
AAAAGTTTCTTTGTTTTTCTGTTTAATGGTTTGATAAAGCTTCAATATTT
CAAATTTCAATCACAGTCCAATAGTTTTCGTTTTTATATGCGCATAAAAC
CTTAAAACCTTTTTTTTTTCAGGGACGCGCAGAGTATTTGGTTAAATGGC
AAGGATATTCATCAAAGTATAACTGACTTTTTTTTAATTAATGAATTTTT
CAACAACAAACAACATATTTTGGCGATGAACTTTGATGCTTGGGAAATGA
TGCTCAATGGTTAAATACCAATTGAAAAAATTTCTGAGTGGCCTGGACAG
GGTTGCATGAAATACAGAGAGTTTGATGGCAAAACAGCAACTGTTTTTTT
GTCAGCAAACAGACCATAATTGTGTTTTCTTGTTACTGACTAGGAAAGGG
ACAGAATAGGAAGGGGGGAAGGAGAATGGGTGATTGATTATGTAAACCTT
CTTGAAACAGCATTTTTATAATTTTTACTGGTCAAGCACTCATCTTTTAA
ACCTCTTATTGCCAGGGAAGAAGGCTAGATGGATCGTCAAAATTCCAATA
GATTTAACAATAGCAGCTAGACTCAACTAAGTACTATAAAAATCCCCTGG
AAATTCACATGGTGATTTTCCATTCTTAGTTATATTGATCTAATTATTAT
TCAGATTCAACACATGGGAGCCAGTGGAGAATATTTTAGATGAACGCTTA
TTGGAAAGCTATAAAGCCCTGTAAGTCTGACTATTTTCTTTAATTTTTAA
ACTCTTGTGTGGTTTAAGGATATTGTAGCTTCGTCAGTCTAAACTTCCCT
TATCAAATCCAAACAGATAAAAATGTTGGATGAAAGGGTTATGGGTTTTG
AGACATGACCAAATAGCGTTAGAATGCCATGGTTTGAAATGACCTAATGA
TTCGCATAATAAGATTTCTTGTCCTTGTCCTTGCATTGATGCACTCACCT
GTACNCCTAATGATTCACATAATAAGATTTCTTGTCCTTGTCCTTGCATT
GATGCACTCACCTGTACACATTATTTGTACACTTCACCTTTTGTGTAGAC
TAGTTAAATCTTTAAGTCAATAACCTGGTTTTATACAATTAATAGCGTTT
GGAAGGTGTAAAAAGCGAAAGAAAAAAATTGGCTAATCTTCATTGGCTGT
TTTTTGTTGTTTCTTTTTACAATCTTCAATCTTAAAAATATTCCCACATT
ATAATGTTTTAGTATAATGAAAGATGAAATTGATTGCATATAGCTTCCGT
CTTTAACAAACTTGCTTTTATATCATTTTTTGTTTGGTCACATTTGAAAG
AATACTTTAAAATGCTCTATACTCGTGCTTCTTAATCCTTCGAGCATCTT
GGGAAGGGTAAAGAGGCCCCGCCCCCGAAAACGAATTTTCCTAAATAGTC
CTTGGATATTAAATTTTGACAAATGGTAGGTATTGATGATACAAGATTGC
AGCCTGAATTTCAGCGAATTCGGACGAGTGGTCATGCTGAAAGTGAATAT
TTTAGGTAAAAAACTGACCGGTCTGTAAAATACTAACAACTCACGTGACA
AAATTGAAATTTAGATGGTCAATATCTATCACTGGTAAATTTCAAGTCAA
AAGCTGCAGTAGTTCCTGAGTTCCGGAAGGTGGTCATGGTTACCAGTCTG
TAAAGTACCGAGTACTCAAGGGAAGGAATTTTTTAGCATTCAGGAACAAA
GTTAAATCAAATCGAACGAGCCGATCAGTAATACATGATTTTTGTCAAGT
TTACATTCTGGTCTGTAAAATACCAACCAGGCAGGTGGCCGAACCAAAAA
ATTTCTTAAATCATCCTCAATTATCCATATCTACCACTGGTCAAAATTCA
TAGCACTTGTCAATCTTGGAATTTTAAGGGCGGCCTCGAGCCCCCAAGAT
GCTTCCCCTAGTAAAAAATAGGAAAAAGCTGTTAAGTATTATGACGCTGT
AAATAATTTTTATAGTCTTTCGCATTTCAGTCACCCACCAGGAAATCGCG
GTAAAAAGAAGAGAAGAGGTGGCAATGTGAAGTCTATCACCCCCAAAAAA
CCTAAGTTAGAGCAGGTTAGTAAATCTTATTGGCTCAATCTTTTTACTAT
GGCAAATTTCGGTAGATAGAGCTATTGAAAAAATTTCGAACTGAATACTC
TTAGGTGCCAAATAAACGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTAAA
TTTAGGCTTTTTAGAGTAAAACAAGAAACTTTCCTTTTGGGAGCTGGGAA
TTTTTTCAAAAATTAATAAACGGGGGGGTCCTAATAACGTCCGGGGAGTT
GGAAAAAAATCGAAAAATTAACAAGCGGGGGGCCGTTTATTTGGCACCTA
AGAGTAATAGGAATCTTATGACGACTGGCGCTTTTTCAAACATAATGAAA
TGTTAATGTTATCATGTTTTTATTGTATTGATTATTACATTCGTAAATGA
TTATGAGAGTGTGGGAAGAAAAATATGATAAACCTTCAAATTATTTCTTT
ACATTTTTTGCGCTGTCTACATTTAGTACACCATATTTTAACACAATTTT
GAGTAACCTAGCTTATAAGAAATGAGGGCTTAATCAGTGTTTCAGTGGGG
AGTGTTGGAAGGCAAGAGTATATTGCGCTTGGTTCATATATGAAAGATTT
TTCATGTTTTATTAAGTTTGCGTAGTTTCCACCATTATGGGAGAAAACGT
TCGAATCTGTGGAATGGATCCAATACGCCAATCGAATGTCCCCTTCCATA
ATGAGGAAAGTTACGTAACTTGACAAACATGAAAAATTCTCTATTATATT
ACCAGTGTTAAAAGTTCTTCCTTCTCAGACGGATTTCGGCCTCGGCGAAG
TATATTACAAAGAGGCTTTCCCATCTCGGTAATTCTGTCATAATTCACCA
AAGTTTTCAGAATTATATGCTGATTTTCTGTGTAAAAGCCGTACTCCGTC
TCAGACAAAACAATACCGAGTTTATGTATTTGCACTTTTGAGGACGGTAG
AGTGACTGAAGCGATTTGGAAAAACCCGCAATTCCGCCCCGCAAAATCGA
GGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGTCAGGATCTAC
TCAAATTAGAACATAACCGTCTCCGTCGCTGAAAAACACACATACATAAA
CTCGGTATTGCTTTGGCCACTGTATTACTATATTTCCAATGTTTAATTCA
ATGAAATTTTCCTTCTCACCGACATCGAGTAGTGCTACCAATAGGGTACC
TCTTTCAAGTGGCTGGGTAGCTCAGTCGGTAGAGCATTCGCCTTACAATC
TCAGGGTTGTGGGTTCGATCCCCGGTCACCGCCAACTCAGCGGATGAGTA
GCTTAGATTTGGTGATCTGATCTAGGCGGTATAAGTTACTGGGAGCTGAG
AGTAGGTGTGGCGCTCCACCTCAGCATTCGATCTCCCAGGTCTAGCGCAA
ATAGAAAAGGGGATAGACTCCCTCACTGCCGGCTCCGCCGACAGCCACCA
GATGAATATACTTACTTACTTACTACCTCTTTCAAAAAACTTTGATCAAA
AATATTGCTTATCCGAGAGATGATTATTACCATGTTTCTTATGTTAAAGG
TTTATGTAAAAGAAGAAGCGACAGAACACGAAGAAGAAGAAGATGAAGGA
GATACAACTGTTGAAGAACCGCCACCACCACCGCCCATGGTGATGGGCGA
AGTAGAAGGAAGTGTGATCGAAGATATTGAACATGGTACCGAAGATGAAG
ATGTAGATATTTTGAATGACTCACAAGATGAAGATCGGAATACAGAACCA
ACTCTCGACCGATTGAACAGGTAAACATTTGATGGTCTCTAATCCGATTT
TCAAGGGGAATAGGATTTTCAACGAATAAGGGAGCGTATCGAATAATAGA
GCTTCATTTATGACAGTTACTTGTTGACGGCGACGGTGACAATATCATCG
AATAGTTTCTTAAGGAGACTCGCACTTACGAACGGCCAGCATTTTTAATC
CCCTTTTTTCTTATTAGTTAAGTTTGCGCCTGAACTTCCTACCAACCAAC
AACTTGCGAAAAATCTACAAAGCGGTTGCCTATTTTAATGGGTAAATTTT
CTTGCGGGGATTAACTTTCGCGGTTAAGCTCATCCGCGAAATTTTAAGAT
TTCATGGGGATTTAATCTCGCAAATGGCACTATTCTGGGAAATACTGTAA
TATTTTCACAAAGACATGGCTTTTACTTACAAATCATACATGTTGGTTGT
TAAAATATGCATCATTAGTGCTTCATCGATCCCAGTTAAAGGAAGTAGTT
TATTTGAGAAGTGTTGAGTTCTGTTCAGAAATATATCTCGCGGATAAGGA
CTTGTCGGACTTCCCTTGGGAGTGTGAATGACATCCAAATCCGCGAAATC
TGCGAAATTTAAATCCCGCAAAATTTTATCCTATTGTAGTATCCTCTCAG
CCAAAAAATAACCTCACATTTTAACTTGTGGTATAAAACTTTTTTTATCT
ACCAATATTTAGTTCCAATAATGAAGCACCTTTATCGCTGAGGATCAAAA
TTGAAGAACAACCATCGTCATCAAAAATATTAACTAACCGAAAAAATGGT
TCAAAATCATGTCCTGTTTCACCTTCGCCAAGGCTTGTCTCTGCAGAAAC
TAAAAAATCAACCAAAGCAAAGACTATTCCTGCAGATGTAGCAATTCCCA
AGCCCAAAGATGTTCCCAATAAACTAGAAAATATCGAAGTTCCAGAATCA
AAAACAACAATACTCACTACTAAGTCAACAGCAGATAATGCAGAATCGGA
GATGAAGTCTACCACTGAAGCCACTCTTTTACCGAAGACTGACATTACGA
AAATTAAATGTGATTGCTTGAAACAAAGGCCATTGATTGATCAGATCACA
TTGACTGATATCACCAAAGGTGGAGTGACAGTTACTATCAAAGAATGTTT
CACAGATAAAGGATTCTTCCTGGCAACTTCATGATCGACGAGGGTTTTTT
TTTAATCTTTTATTACAATAAAAACGAAAATTTTAATGGATCAAATGGTG
ATTGGTTCATTTTTATCAGTTGGGAGATGCAGTTATTGTCTTTGAAGTGA
GAATATCATCCTCTTCTTCCTTTTAACTTCTTAAGAGAGGTTTTATAAAA
AAGTATAGTAAATGGTATATCGCAGTTGATCGGTGGATATTACACCGATG
ATGAAATAGGTCATTATTTTACTGTTTACCCAGTAAAGATAGCAATTAAA
AGGATTCATTACTTTAAAAAGAAAGTGTTATTTAATTGTTATTGCAATTA
TAAAGAAGAATTAATTGAGTTTTTACGAAGATGTTTTATCATAAAATCAA
AAGATG

Coding sequence (CDS) from alignment at sc0000117:255343..272948-

>TCONS_00010823 ID=TCONS_00010823|Name=TCONS_00010823|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at sc0000117:255343..272948- (Clytia hemisphaerica)
ATGGCGGACTTTCAAGGTGCCCCAGGAGAAGTATTTGCTGCTGAAAAAAT
CCTTAAAAAGCGCTACAAAAAGGGACGCGCAGAGTATTTGGTTAAATGGC
AAGGATATTCATCAAAATTCAACACATGGGAGCCAGTGGAGAATATTTTA
GATGAACGCTTATTGGAAAGCTATAAAGCCCTTCACCCACCAGGAAATCG
CGGTAAAAAGAAGAGAAGAGGTGGCAATGTGAAGTCTATCACCCCCAAAA
AACCTAAGTTAGAGCAGGTTTATGTAAAAGAAGAAGCGACAGAACACGAA
GAAGAAGAAGATGAAGGAGATACAACTGTTGAAGAACCGCCACCACCACC
GCCCATGGTGATGGGCGAAGTAGAAGGAAGTGTGATCGAAGATATTGAAC
ATGGTACCGAAGATGAAGATGTAGATATTTTGAATGACTCACAAGATGAA
GATCGGAATACAGAACCAACTCTCGACCGATTGAACAGTTCCAATAATGA
AGCACCTTTATCGCTGAGGATCAAAATTGAAGAACAACCATCGTCATCAA
AAATATTAACTAACCGAAAAAATGGTTCAAAATCATGTCCTGTTTCACCT
TCGCCAAGGCTTGTCTCTGCAGAAACTAAAAAATCAACCAAAGCAAAGAC
TATTCCTGCAGATGTAGCAATTCCCAAGCCCAAAGATGTTCCCAATAAAC
TAGAAAATATCGAAGTTCCAGAATCAAAAACAACAATACTCACTACTAAG
TCAACAGCAGATAATGCAGAATCGGAGATGAAGTCTACCACTGAAGCCAC
TCTTTTACCGAAGACTGACATTACGAAAATTAAATGTGATTGCTTGAAAC
AAAGGCCATTGATTGATCAGATCACATTGACTGATATCACCAAAGGTGGA
GTGACAGTTACTATCAAAGAATGTTTCACAGATAAAGGATTCTTCCTGGC
AACTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006071XLOC_006071Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010823-proteinTCONS_00010823-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010823-exon-sc0000117-1575043694:272731..272948TCONS_00010823-exon-sc0000117-1575043694:272731..272948Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1575043694:260883..260926TCONS_00010823-exon-sc0000117-1575043694:260883..260926Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1575043694:260329..260394TCONS_00010823-exon-sc0000117-1575043694:260329..260394Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1575043694:258984..259068TCONS_00010823-exon-sc0000117-1575043694:258984..259068Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1575043694:256879..257099TCONS_00010823-exon-sc0000117-1575043694:256879..257099Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1575043694:255343..256186TCONS_00010823-exon-sc0000117-1575043694:255343..256186Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1510915933:272731..272948TCONS_00010823-exon-sc0000117-1510915933:272731..272948Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1510915933:260883..260926TCONS_00010823-exon-sc0000117-1510915933:260883..260926Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1510915933:260329..260394TCONS_00010823-exon-sc0000117-1510915933:260329..260394Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1510915933:258984..259068TCONS_00010823-exon-sc0000117-1510915933:258984..259068Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1510915933:256879..257099TCONS_00010823-exon-sc0000117-1510915933:256879..257099Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1510915933:255343..256186TCONS_00010823-exon-sc0000117-1510915933:255343..256186Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1491911889:272731..272948TCONS_00010823-exon-sc0000117-1491911889:272731..272948Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1491911889:260883..260926TCONS_00010823-exon-sc0000117-1491911889:260883..260926Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1491911889:260329..260394TCONS_00010823-exon-sc0000117-1491911889:260329..260394Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1491911889:258984..259068TCONS_00010823-exon-sc0000117-1491911889:258984..259068Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1491911889:256879..257099TCONS_00010823-exon-sc0000117-1491911889:256879..257099Clytia hemisphaericaexon
TCONS_00010823-exon-sc0000117-1491911889:255343..256186TCONS_00010823-exon-sc0000117-1491911889:255343..256186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:255343..272948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28603	1.52671	1.01295	0.68132	14.8546	11.8872	11.6457	12.8879	6.19603	7.73314	6.96781	5.43686	7.17709	7.7045	7.27077	7.73451	7.97521	8.71212	5.1117	5.81551	7.78483	8.34585	4.64801	5.44971	11.6464	11.1174	4.7152	3.68209	4.93383	4.64741
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017984Chromo_dom_subgr
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR033773CBX7_C
IPR023779Chromodomain_CS
IPR016197Chromodomain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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