TCONS_00010861 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010861
Unique Name	TCONS_00010861
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1569

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000118:36727..41207+
coding sequence from alignment at sc0000118:36727..41207+

transcript sequence

>TCONS_00010861 ID=TCONS_00010861|Name=TCONS_00010861|organism=Clytia hemisphaerica|type=transcript|length=1569bp
ttccaatttttttcttggTAATTTATTATGcatactttgaaaaattttca
aagggcCCGGTAAAATAATAAGCGCCACACACAATTTTTCCTTTCGCTGG
TGGTTTATTTTCAAACAGCAAATAAACTCTGATTGGCCGGTTGATAAAAC
TAAGAATAATAGAATGTTTTCTGATTGGTTAGGGTGAACTGGAGTCTTTT
GTCTACTTCTGGGTAGAATAAAAATCAAGGTTAttttccccggggggggg
ggggNcacagcggagcacccccgtcggtcgacaagggtagtacccccccc
gggttatTTTCATTTGACCTCTTCATTGTATGCAAGCAGTCAGAGAAGGA
AGATGGCAGAAGAGAGAGAATACACTCTGATCTGTGAAAATGGAGATGAT
TTGGTTGAGCGCACAATCAAATCTAGCAATATGAACATTGAGATTATAGG
ACTTGCTTTCAAGCTCGTTCCATCCTCAATCTATCTAGTAGAGAGATATG
GATCCAATAAGACTGAATTCCCATCAAAAGTAGACGGAACCTTTAAACTT
CGTGAGAATGAAACTACACATTTCACCGTCGAAGGAGAAAAGAAGAACTC
AAACTCAACAGGAGCCTCAAACCAGTTACCAGGATTACCAACCCCATTTC
AACAGCAGTTGTCTGAGCCGTTCCGACGTGTTGGAGGAAGAAACAGTCTA
CCTGGAAGATTTTCTGTAAGCTCCACCTCCACTTCACGACAGCGAAAACG
AACTCAAGATTATGTGAAAGTAACCGCTTCTAAAAGAAACAATGGCAAAA
AGAAGTTCCAAGCAAGGAAGATCGTTCACAATACATTAGTATCCAAGACG
AATGCTCCGTAGAATCCATTACGCGTAAAGTCCGAGATGGCTTCAGAAAC
CAGTCCTTGATACTAGTAGACACCAGTGGTGACAAAATTGAAGAAACTGA
CATAACTAAAGAACTATCATTTTGGACAGCTAACGCAAGGCGCGTTTATG
CTGTGGATCCTGAAGATACTGGAAACAAAGAAATGACAGGAGAAGCACCG
ATTCAGCAAATGCAAATGCATCCAATGATGGTCCAACAGCTACAAGCTTT
AAatACCGAAGTAAGACAGCTTAAAGAAGTGTTAAATAACAACATGGGTG
TGATATCAATGACTGGGATCACAAATGGAAACTTGGAAAGTCTCAGAAGA
ACGCTCACAAATGGTATTAAAAGCTTCAAATTGGTAAACCCTTTGAGAGA
AGCTACAGAATGCAAAATTTGCCACGAACGAATACGAGAAGGACCCCTTT
TTTTCTCACAATGCTGCAAAGTGTTAATAGCATGTAGCCTATGTAACATT
CTCCTTGGAACAGAATGCCCATATTGTAGATCTCCAAACTTCAGTACGCT
TGGAATAAAAGGATTTGATGCAGTTCTAACCATACTGGAAGAAATTGAAC
GAGAGTGAGTTTAGGAGAGTGAATTTATATCTTGTATAGTAGTATTCTTG
TATTTTTCATCTAGATTTTTATCTATAGTTAGTCTTGTGTTTTTACCAGA
ATTTTATTTCTGTATTCAG

Run BLAST on NCBI

protein sequence of TCONS_00010861-protein

>TCONS_00010861-protein ID=TCONS_00010861-protein|Name=TCONS_00010861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MAEEREYTLICENGDDLVERTIKSSNMNIEIIGLAFKLVPSSIYLVERYG
SNKTEFPSKVDGTFKLRENETTHFTVEGEKKNSNSTGASNQLPGLPTPFQ
QQLSEPFRRVGGRNSLPGRFSVSSTSTSRQRKRTQDYVKVTASKRNNGKK
KFQARKIVHNTLVSKTNAP

Run BLAST on NCBI

transcript from alignment at sc0000118:36727..41207+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010861 ID=TCONS_00010861|Name=TCONS_00010861|organism=Clytia hemisphaerica|type=transcript|length=4481bp|location=Sequence derived from alignment at sc0000118:36727..41207+ (Clytia hemisphaerica)
ttccaatttttttcttggTAATTTATTATGcatactttgaaaaattttca
aagggcCCGGTAAAATAATAAGCGCCACACACAATTTTTCCTTTCGCTGG
TGGTTTATTTTCAAACAGCAAATAAACTCTGATTGGCCGGTTGATAAAAC
TAAGAATAATAGAATGTTTTCTGATTGGTTAGGGTGAACTGGAGTCTTTT
GTCTACTTCTGGGTAGAATAAAAATCAAGGTTAttttccccggggggggg
ggggNcacagcggagcacccccgtcggtcgacaagggtagtacccccccc
gggttatTTTCATTTGACCTCTTCATTGTATGCAAGCAGTCAGAGAAGGA
AGATGGCAGAAGAGAGAGAATACACTCTGATCTGTGAAAATGGAGATGAT
TTGGTTGAGCGCACAATCAAATCTAGCAATATGAACATTGAGATTATAGG
ACTTGCTTTCAAGGTTAGTAATGTTCTTTCTTCTAACTCCAAAAATGTCC
TTTGCGACTTTTAAATATTATTTatgaaaacatcaaaagataaaaataaa
atctttcattGTGTAGGGTCTATGCGCCTATGTTTAGATTATtctttcct
gaaaaaaatattctttaaccCTTAGGAGTCGAAACACGTATAtgtacgtt
ttgaaaaggtcattttaccgatacacagtcttttggtcataactcctgac
cacttgagattcagagaaaaaaaatctgctattttttgtagctgagaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAatcctttgtcctggtcgagaaattgcctttgaaaa
aataaatttacagaaaaaaatgatgaaatttttggcctttttcaaaaaag
acagcggctttgaaaggttaaggAAATTTCGGTCATTTTGTGGAAAAATC
TtcattggaatttttttaattaattaaatttAGATTTACTAAATTTTact
aaaaactgaaattttttatcaattttaactttcgcgaatacacgtttttt
acaagaacattcaaaatcaaAGAAGCCTTCAATGGtcttaaattttttgg
tttcaagccttgaaattttcttaattaaGTCTATTAATTTAAGTCTCAAA
AATTTACTCATAGGGGTCTTAATTGGCTCTAAACGCGATTTTCCACTTAT
TAGGTCAGCTGGCTGTGTACATAATTATAAACAaacaaatgttcttattt
ttatagtcttgaagccttcaaatgttcttaaaggcctgtttccatcgatc
gcgcgagcgtgcacgctaggccaaaattcttaaaatagatttggccgcac
actccgcgcgatcaatgtttgatttccatcaaaaacatacacaatctgta
tgtttacatttttttgtttactcagcagTTTTTCGCTTTCTTGATTGGTT
AAAGAATTGTCAATTGAGATGTGCGCTCCTGTACGCTCAAAacagttgaa
aattttcagcgtaGAAAAGAGCGCAAAAGCGTACAAGAGCGTACACATTT
TGTGtacaagaaaatttaattcgTGACGTCAATgtgctattttaggaaat
tttgccctaccgtgcacgctcgcgcgatcgatggaaacaggccttaaCGC
GAATGGCGACCTAGCATTTTTCGCGGAACTTAATATTCGCGATTTGGCCA
AACATTTAaagcaatttttgtgttttcagAGAAAATAGTTTTCTTCCTCA
AAACTCCTACATCAATCGATCGACAAAGAGTTGATGTTTTGTTATGCTTT
GTTTTATAATTTGTTTGGAAAAGAATAAACAAAGTTATTCTGAAGAAGGG
TTTTTTCTCTCCCGAAAATTACTTataccaaaataattttttttgtaatg
ttTATTTTGTGACTTATGGCTTCTTGGAGCTAGgcgcaaaaagttaaaaa
aaaagtgatttGCCTCAAGTCATCACTGCGATGTGATCCCTAGCTGAGGT
CAGTTGAATTATTATAACTCTTGTTAAGATCAACTTGAAATGGAATCCAA
AGTTTTTTATGGCTTATTGATTTgatatgtttttgttttctcgTTTACAG
CTCGTTCCATCCTCAATCTATCTAGTAGAGAGATATGGATCCAATAAGAC
TGAATTCCCATCAAAAGTAGACGGAACCTTTAAACTTCGTGAGAATGAAA
CTACACATTTCACCGTCGAAGGAGAAAAGAAGAACTCAAACTCAACAGGA
GCCTCAAACCAGTTACCAGGATTACCAACCCCATTTCAACAGCAGTTGTC
TGAGCCGTTCCGACGTGTTGGAGGAAGAAACAGTCTACCTGGAAGGTAAG
CAATCAGGCAATTTTCTAAGGCAAGGCTCTAAGTGAAAGGAATCAATCTT
GGATTTTCATAGATTCAATTAGTAAACATTTCCCCCATAATTCCGGAATT
CCTGATTTATTCCGACTTTTTTGCTCTCAGTTTTTTTATTAGGAGGCAAA
CAAActcgtttttgttttcattcctATTCAGAATTCTAAATTTTTCTCGG
TTGTCATGGTAACCTTCGGAAATATACATGAAATATACAGAAATATAATG
GGGTGTGGCGAATAAAAACTAAACAataattttcactattttttatGGAA
GGTGGTGTTTTGTAGAATTagtactttttttttaattaagaaaaacaatt
ttaacatttttctaaatcttaCTGTAAGAAATTTATCTCGGAAGTTAGTG
GAAATTGACATGAAAATACAGTTTATGTAAATTGTTGAATATTTCACGTT
TTCAGATTTTCTGTAAGCTCCACCTCCACTTCACGACAGCGAAAACGAAC
TCAAGATTATGTGAAAGTAACCGCTTCTAAAAGAAACAATGGCAAAAAGA
AGTTCCAAGTAAGTTAACATTCAGTTAtgtcaacttcataaaaaataagt
ttcaatTTCATGTCCACACGTACTTCAACTGGTTTCAGATTTCACAAAAA
ATCCTTCTTTTATTACTCTCAGTCTAATAAAGGCTAATTATTAGAAAGTT
GATTATTTCGTTAATGATCTGGTTGGGAATTTTTAAACCTAATTTTAAAA
GTTGTAAAAGTAATAAATTATCCAccttaaaaaaaataagaataaagtGC
TTGATTTTTTTAGGCAAGGAAGATCGTTCACAATACATTAGTATCCAAGA
CGAATGCTCCGTAGAATCCATTACGCGTAAAGTCCGAGATGGCTTCAGAA
ACCAGTCCTTGATACTAGTAGACACCAGTGGTGACAAAATTGAAGAAACT
GACATAACTAAAGGTAAATAAAATCGATTAGTCCTGAAAATTTTTGTGAA
GTTCTTGAAAGGTCACAActtagaaatattttcaaataaaatattggTTA
GAAATATTACAGTTTAGAATGAATATTTTAGAATACtgtaaaaataaata
caaatgaAGCTACAATATATACACGAAGTAATATAACTAAAGTAATAACT
TTATCAGTTGACTTTAAGGTGTAAAAGGTAAGGGTAAGTGATTATAAAAA
CATACATTATATAAAATGTCATTTGTGTTATAGAACTATCATTTTGGACA
GCTAACGCAAGGCGCGTTTATGCTGTGGATCCTGAAGATACTGGAAACAA
AGAAATGACAGGAGAAGCACCGATTCAGCAAATGCAAATGCATCCAATGA
TGGTCCAACAGCTACAAGCTTTAAGTATGGTTTCTCAGTTTAATTATTTG
AATTCAagttattgaaataaaatttaggTTTCTAGTCCATAAACCAAATA
TTTCTTCAATGGAAAAGGATTGTATTGCAAAACCGTGATTTATCCATATT
TATCACATTTTCATGTCTATTTCAATTTCAAACCAATGTCAAATTtctca
ttttcctttttcagatACCGAAGTAAGACAGCTTAAAGAAGTGTTAAATA
ACAACATGGGTGTGATATCAATGACTGGGATCACAAATGGAAACTTGGAA
AGTCTCAGAAGAACGCTCACAAATGGTATTAAAAGCTTCAAATTGGTAAA
CCCTTTGAGAGAAGCTACAGAATGCAAAATTTGCCACGAACGAATACGAG
AAGGACCCCTTTTTTTCTCACAATGCTGCAAAGTGTTAATAGCATGTAGC
CTATGTAACATTCTCCTTGGAACAGAATGCCCATATTGTAGATCTCCAAA
CTTCAGTACGCTTGGAATAAAAGGATTTGATGCAGTTCTAACCATACTGG
AAGAAATTGAACGAGAGTGAGTTTAGGAGAGTGAATTTATATCTTGTATA
GTAGTATTCTTGTATTTTTCATCTAGATTTTTATCTATAGTTAGTCTTGT
GTTTTTACCAGAATTTTATTTCTGTATTCAG

Coding sequence (CDS) from alignment at sc0000118:36727..41207+

>TCONS_00010861 ID=TCONS_00010861|Name=TCONS_00010861|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0000118:36727..41207+ (Clytia hemisphaerica)
ATGGCAGAAGAGAGAGAATACACTCTGATCTGTGAAAATGGAGATGATTT
GGTTGAGCGCACAATCAAATCTAGCAATATGAACATTGAGATTATAGGAC
TTGCTTTCAAGCTCGTTCCATCCTCAATCTATCTAGTAGAGAGATATGGA
TCCAATAAGACTGAATTCCCATCAAAAGTAGACGGAACCTTTAAACTTCG
TGAGAATGAAACTACACATTTCACCGTCGAAGGAGAAAAGAAGAACTCAA
ACTCAACAGGAGCCTCAAACCAGTTACCAGGATTACCAACCCCATTTCAA
CAGCAGTTGTCTGAGCCGTTCCGACGTGTTGGAGGAAGAAACAGTCTACC
TGGAAGATTTTCTGTAAGCTCCACCTCCACTTCACGACAGCGAAAACGAA
CTCAAGATTATGTGAAAGTAACCGCTTCTAAAAGAAACAATGGCAAAAAG
AAGTTCCAAGCAAGGAAGATCGTTCACAATACATTAGTATCCAAGACGAA
TGCTCCGTAGATGGCAGAAGAGAGAGAATACACTCTGATCTGTGAAAATG
GAGATGATTTGGTTGAGCGCACAATCAAATCTAGCAATATGAACATTGAG
ATTATAGGACTTGCTTTCAAGCTCGTTCCATCCTCAATCTATCTAGTAGA
GAGATATGGATCCAATAAGACTGAATTCCCATCAAAAGTAGACGGAACCT
TTAAACTTCGTGAGAATGAAACTACACATTTCACCGTCGAAGGAGAAAAG
AAGAACTCAAACTCAACAGGAGCCTCAAACCAGTTACCAGGATTACCAAC
CCCATTTCAACAGCAGTTGTCTGAGCCGTTCCGACGTGTTGGAGGAAGAA
ACAGTCTACCTGGAAGATTTTCTGTAAGCTCCACCTCCACTTCACGACAG
CGAAAACGAACTCAAGATTATGTGAAAGTAACCGCTTCTAAAAGAAACAA
TGGCAAAAAGAAGTTCCAAGCAAGGAAGATCGTTCACAATACATTAGTAT
CCAAGACGAATGCTCCGTAGATGGCAGAAGAGAGAGAATACACTCTGATC
TGTGAAAATGGAGATGATTTGGTTGAGCGCACAATCAAATCTAGCAATAT
GAACATTGAGATTATAGGACTTGCTTTCAAGCTCGTTCCATCCTCAATCT
ATCTAGTAGAGAGATATGGATCCAATAAGACTGAATTCCCATCAAAAGTA
GACGGAACCTTTAAACTTCGTGAGAATGAAACTACACATTTCACCGTCGA
AGGAGAAAAGAAGAACTCAAACTCAACAGGAGCCTCAAACCAGTTACCAG
GATTACCAACCCCATTTCAACAGCAGTTGTCTGAGCCGTTCCGACGTGTT
GGAGGAAGAAACAGTCTACCTGGAAGATTTTCTGTAAGCTCCACCTCCAC
TTCACGACAGCGAAAACGAACTCAAGATTATGTGAAAGTAACCGCTTCTA
AAAGAAACAATGGCAAAAAGAAGTTCCAAGCAAGGAAGATCGTTCACAAT
ACATTAGTATCCAAGACGAATGCTCCGTAGATGGCAGAAGAGAGAGAATA
CACTCTGATCTGTGAAAATGGAGATGATTTGGTTGAGCGCACAATCAAAT
CTAGCAATATGAACATTGAGATTATAGGACTTGCTTTCAAGCTCGTTCCA
TCCTCAATCTATCTAGTAGAGAGATATGGATCCAATAAGACTGAATTCCC
ATCAAAAGTAGACGGAACCTTTAAACTTCGTGAGAATGAAACTACACATT
TCACCGTCGAAGGAGAAAAGAAGAACTCAAACTCAACAGGAGCCTCAAAC
CAGTTACCAGGATTACCAACCCCATTTCAACAGCAGTTGTCTGAGCCGTT
CCGACGTGTTGGAGGAAGAAACAGTCTACCTGGAAGATTTTCTGTAAGCT
CCACCTCCACTTCACGACAGCGAAAACGAACTCAAGATTATGTGAAAGTA
ACCGCTTCTAAAAGAAACAATGGCAAAAAGAAGTTCCAAGCAAGGAAGAT
CGTTCACAATACATTAGTATCCAAGACGAATGCTCCGTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006102	XLOC_006102	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010861-protein	TCONS_00010861-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000118	supercontig	sc0000118:36727..41207 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0295906	0	1.16417	0.751199	0.113237	0.21997	0.23004	0.463624	0.425996	0.161382	0.1221	0.285282	0.224901	0.119093	0.181892	0.130092	0	0.151659	0	0.0374193	0.0300124	0	2.00103	2.20197	0.180746	0	0.117309	0.0351553

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00010861 vs. Swiss-Prot (Human)

BLAST of TCONS_00010861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00010861 (transcript) - C. hemisphaerica