TCONS_00010899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010899
Unique NameTCONS_00010899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010899 ID=TCONS_00010899|Name=TCONS_00010899|organism=Clytia hemisphaerica|type=transcript|length=1273bp
CATTATTCTACTTGCTTTTCCATTGTCGTAAATGATCCCAAATCTCACAc
ttatataatttttataagaGTTATTCTTATAAGTACAAAAGCGTGTATTA
AAAAGATAACAATTCGTTTTATAACAAAGAAACTACTTCTTTTAAGGTTG
GACCAACGTATGGAAGAAAAATGATGACTGGTTTCATTAAACAAAAGTAC
AATGTGTCGATAGGTCAGAACAGAATAGCTTCTGCTCTCGCTCAAGTTGC
TCCAAACTACAATCAACGTCGACGAACAAATACTGCTCGTTTGATTAATC
CGATCCCATACCAAGCTGACTACTTTGGTCATAAGTTACATGTAgaccaa
aatgaaaaattgattcGGTATGGTGTCACGCATGTTTGTGCCATTGACGG
ACACAGTAGATTTATTGTAGCGGGCACGACTATGCCAATTAAGAACAACC
TCACAATTTACAAAGATGTTTACAAAAAATCTGCACTGGAGCACGGAATG
TTTCATCAAGTTAGAGTCGATTGTGGTaaagaattttatttaatgCTTGG
AATTCAAGAATTATATGCCCATCTACGAGGAGATAACAGCATGCTCCCAT
ACAGACAAACTCAATCTAAGAAGaATTTGCCAATTGAACGTATTTGGGTT
GAAGTAAACTCCAGGGTAAATTACCCCTTGAAGGAAGCATTGGTTGAGAT
GGACAACACACTTCAAATTGATATGGAAAATGACGCATTTAAATTTTGTG
TATCAGAAGTGAGTTGTCGGGTTGCAAATTACGGTCTTAACGTTGTAATA
TCATCTTGGAATCAACACCCTATCTCAGgcCGTGGTGTTCCTTCAACGAT
AAAAGAACGGACAAACAGGTTACAACCCTTGAATGTCAATGATATTCCAG
AACCTTTGGAAGCAAAACAGATGTACGAAACTATCTATTTGGGAAGGTTG
ACAGAGGAGAGTCATTTTGGTATTGATCCATTGGTCGGCTTTGAAGAGCT
TATCAACCAACGAGAAAATTCGTTTCAAGCTGTTCATCAAATTCCGACAA
TATTCAATCATTTAGTAAATGGAAACCAAGCACCTTTCAAAACTGCTATT
TCAGATTTTATACAGATAACTTCAAATTTGACAGCTTTTTAATACGGATt
ctatttaactttttgttggTTCCTTGCCAGTTGAAATACCAATGCTTCTA
TTATTTacgatgttttgattttgcaggATGTTTTGCAGTccatttaaata
aaatttgctTTAAACATGCAGAG
Run BLAST on NCBI

protein sequence of TCONS_00010899-protein

>TCONS_00010899-protein ID=TCONS_00010899-protein|Name=TCONS_00010899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MMTGFIKQKYNVSIGQNRIASALAQVAPNYNQRRRTNTARLINPIPYQAD
YFGHKLHVDQNEKLIRYGVTHVCAIDGHSRFIVAGTTMPIKNNLTIYKDV
YKKSALEHGMFHQVRVDCGKEFYLMLGIQELYAHLRGDNSMLPYRQTQSK
KNLPIERIWVEVNSRVNYPLKEALVEMDNTLQIDMENDAFKFCVSEVSCR
VANYGLNVVISSWNQHPISGRGVPSTIKERTNRLQPLNVNDIPEPLEAKQ
MYETIYLGRLTEESHFGIDPLVGFEELINQRENSFQAVHQIPTIFNHLVN
GNQAPFKTAISDFIQITSNLTAF
Run BLAST on NCBI

transcript from alignment at sc0000118:43188..45098-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010899 ID=TCONS_00010899|Name=TCONS_00010899|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at sc0000118:43188..45098- (Clytia hemisphaerica)
CATTATTCTACTTGCTTTTCCATTGTCGTAAATGATCCCAAATCTCACAC
TTATATAATTTTTATAAGAGTTATTCTTATAAGTACAAAAGCGTGTATTA
AAAAGATAACAATTCGTTTTATAACAAAGAAACTACTTCTTTTAAGGTTG
GACCAACGTATGGAAGAAAAATGATGACTGGTTTCATTAAACAAAAGTAC
AATGTGTCGATAGGTCAGAACAGAATAGCTTCTGCTCTCGCTCAAGTTGC
TCCAAACTACAATCAACGTCGACGAACAAATACTGCTCGTTTGATTAATC
CGATCCCATACCAAGCTGACTACTTTGGTCATAAGTTACATGTAGACCAA
AATGAAAAATTGATTCGGTATGGTGTCACGCATGTTTGTGCCATTGACGG
ACACAGTAGATTTATTGTAGCGGGCACGACTATGCCAATTAAGAACAACC
TCACAATTTACAAAGATGTTTACAAGTTAGTTAGTTTTACATCAACATTG
CAACCTAATGTAATTTTTAACAATTTATGAAACTGTTAAAGAATAATGAT
TGCTTTTCTTACTTCCAAGCTTAGGCACGGTACGGCACTCTTCATAGTGG
GGCAATTTTATAAAGTAATGCTGACCTTGTTATTAAAAAGTTGACTAAAG
AATATATAATAGAACACTCATTTTGCATTGTGAAACACAAAGACACTTTC
TAGGACCTAAAATTACCCCATACTCATTATTTATCTTTAGAAAATCTGCA
CTGGAGCACGGAATGTTTCATCAAGTTAGAGTCGATTGTGGTAAAGAATT
TTATTTAATGCTTGGAATTCAAGAATTATATGCCCATCTACGAGGAGATA
ACAGCATGCTCCCATACAGACAAACTCAATCTAAGAAGGTACACAGTTAA
CACATTTTCATCTTTCTGCTAGTTGCCCTCTCCTGCAATCCTAAAAAGTC
GAATTTACAAAGAATCGAAGAATCTTTCCAATTTAAAACACACTTAGCAA
GAACGCTACTCGTGGGGGCCCTACTTTGGGTTGTGGAAGTAGTAAATCCA
CGAAGACTATGTTTGTATTTTTTATTCTATTTTGTTTATTATTTTTCTTT
GAGAATTTGCCAATTGAACGTATTTGGGTTGAAGTAAACTCCAGGGTAAA
TTACCCCTTGAAGGAAGCATTGGTTGAGATGGACAACACACTTCAAATTG
ATATGGAAAATGACGCATTTAAATTTTGTGTATCAGAAGTGAGTTGTCGG
GTTGCAAATTACGGTCTTAACGTTGTAATATCATCTTGGAATCAACACCC
TATCTCAGGTTATATTTTTACTCTCGACTCTTTAAGTTTTCATAATTGCC
ATAAACCTGAAAGCAAAAGTTTCATTCCATTTTAAAATTCGTATGATGTT
TATCTGTCTTTTTATCATATTATTAGGACTTCCTAAAAAACAAACGATAT
TTATTTTTATTTTAAGGCCGTGGTGTTCCTTCAACGATAAAAGAACGGAC
AAACAGGTTACAACCCTTGAATGTCAATGATATTCCAGAACCTTTGGAAG
CAAAACAGATGTACGAAACTATCTATTTGGGAAGGTTGACAGAGGAGAGT
CATTTTGGTATTGATCCATTGGTCGGCTTTGAAGAGCTTATCAACCAACG
AGAAAATTCGTTTCAAGCTGTTCATCAAATTCCGACAATATTCAATCATT
TAGTAAATGGAAACCAAGCACCTTTCAAAACTGCTATTTCAGATTTTATA
CAGATAACTTCAAATTTGACAGCTTTTTAATACGGATTCTATTTAACTTT
TTGTTGGTTCCTTGCCAGTTGAAATACCAATGCTTCTATTATTTACGATG
TTTTGATTTTGCAGGATGTTTTGCAGTCCATTTAAATAAAATTTGCTTTA
AACATGCAGAG

Coding sequence (CDS) from alignment at sc0000118:43188..45098-

>TCONS_00010899 ID=TCONS_00010899|Name=TCONS_00010899|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000118:43188..45098- (Clytia hemisphaerica)
ATGATGACTGGTTTCATTAAACAAAAGTACAATGTGTCGATAGGTCAGAA
CAGAATAGCTTCTGCTCTCGCTCAAGTTGCTCCAAACTACAATCAACGTC
GACGAACAAATACTGCTCGTTTGATTAATCCGATCCCATACCAAGCTGAC
TACTTTGGTCATAAGTTACATGTAGACCAAAATGAAAAATTGATTCGGTA
TGGTGTCACGCATGTTTGTGCCATTGACGGACACAGTAGATTTATTGTAG
CGGGCACGACTATGCCAATTAAGAACAACCTCACAATTTACAAAGATGTT
TACAAAAAATCTGCACTGGAGCACGGAATGTTTCATCAAGTTAGAGTCGA
TTGTGGTAAAGAATTTTATTTAATGCTTGGAATTCAAGAATTATATGCCC
ATCTACGAGGAGATAACAGCATGCTCCCATACAGACAAACTCAATCTAAG
AAGAATTTGCCAATTGAACGTATTTGGGTTGAAGTAAACTCCAGGGTAAA
TTACCCCTTGAAGGAAGCATTGGTTGAGATGGACAACACACTTCAAATTG
ATATGGAAAATGACGCATTTAAATTTTGTGTATCAGAAGTGAGTTGTCGG
GTTGCAAATTACGGTCTTAACGTTGTAATATCATCTTGGAATCAACACCC
TATCTCAGGCCGTGGTGTTCCTTCAACGATAAAAGAACGGACAAACAGGT
TACAACCCTTGAATGTCAATGATATTCCAGAACCTTTGGAAGCAAAACAG
ATGTACGAAACTATCTATTTGGGAAGGTTGACAGAGGAGAGTCATTTTGG
TATTGATCCATTGGTCGGCTTTGAAGAGCTTATCAACCAACGAGAAAATT
CGTTTCAAGCTGTTCATCAAATTCCGACAATATTCAATCATTTAGTAAAT
GGAAACCAAGCACCTTTCAAAACTGCTATTTCAGATTTTATACAGATAAC
TTCAAATTTGACAGCTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006124XLOC_006124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010899-exon-sc0000118-1575043694:44624..45098TCONS_00010899-exon-sc0000118-1575043694:44624..45098Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1575043694:44211..44358TCONS_00010899-exon-sc0000118-1575043694:44211..44358Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1575043694:43791..43995TCONS_00010899-exon-sc0000118-1575043694:43791..43995Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1575043694:43188..43632TCONS_00010899-exon-sc0000118-1575043694:43188..43632Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1510915933:44624..45098TCONS_00010899-exon-sc0000118-1510915933:44624..45098Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1510915933:44211..44358TCONS_00010899-exon-sc0000118-1510915933:44211..44358Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1510915933:43791..43995TCONS_00010899-exon-sc0000118-1510915933:43791..43995Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1510915933:43188..43632TCONS_00010899-exon-sc0000118-1510915933:43188..43632Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1491911889:44624..45098TCONS_00010899-exon-sc0000118-1491911889:44624..45098Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1491911889:44211..44358TCONS_00010899-exon-sc0000118-1491911889:44211..44358Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1491911889:43791..43995TCONS_00010899-exon-sc0000118-1491911889:43791..43995Clytia hemisphaericaexon
TCONS_00010899-exon-sc0000118-1491911889:43188..43632TCONS_00010899-exon-sc0000118-1491911889:43188..43632Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010899-proteinTCONS_00010899-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:43188..45098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0325154	0	0	0.404693	0.213196	0.428686	0.321065	0.0561963	0.0348041	0.0675634	0.0444135	0.0443518	0.230299	0.0189337	0.0203187	0	0.051312	0	0	0.0644772	0.0471746	0	0.0695156	1.46779	1.27802	0	0	0	0.0377063
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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