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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010899 ID=TCONS_00010899|Name=TCONS_00010899|organism=Clytia hemisphaerica|type=transcript|length=1273bp
CATTATTCTACTTGCTTTTCCATTGTCGTAAATGATCCCAAATCTCACAc
ttatataatttttataagaGTTATTCTTATAAGTACAAAAGCGTGTATTA
AAAAGATAACAATTCGTTTTATAACAAAGAAACTACTTCTTTTAAGGTTG
GACCAACGTATGGAAGAAAAATGATGACTGGTTTCATTAAACAAAAGTAC
AATGTGTCGATAGGTCAGAACAGAATAGCTTCTGCTCTCGCTCAAGTTGC
TCCAAACTACAATCAACGTCGACGAACAAATACTGCTCGTTTGATTAATC
CGATCCCATACCAAGCTGACTACTTTGGTCATAAGTTACATGTAgaccaa
aatgaaaaattgattcGGTATGGTGTCACGCATGTTTGTGCCATTGACGG
ACACAGTAGATTTATTGTAGCGGGCACGACTATGCCAATTAAGAACAACC
TCACAATTTACAAAGATGTTTACAAAAAATCTGCACTGGAGCACGGAATG
TTTCATCAAGTTAGAGTCGATTGTGGTaaagaattttatttaatgCTTGG
AATTCAAGAATTATATGCCCATCTACGAGGAGATAACAGCATGCTCCCAT
ACAGACAAACTCAATCTAAGAAGaATTTGCCAATTGAACGTATTTGGGTT
GAAGTAAACTCCAGGGTAAATTACCCCTTGAAGGAAGCATTGGTTGAGAT
GGACAACACACTTCAAATTGATATGGAAAATGACGCATTTAAATTTTGTG
TATCAGAAGTGAGTTGTCGGGTTGCAAATTACGGTCTTAACGTTGTAATA
TCATCTTGGAATCAACACCCTATCTCAGgcCGTGGTGTTCCTTCAACGAT
AAAAGAACGGACAAACAGGTTACAACCCTTGAATGTCAATGATATTCCAG
AACCTTTGGAAGCAAAACAGATGTACGAAACTATCTATTTGGGAAGGTTG
ACAGAGGAGAGTCATTTTGGTATTGATCCATTGGTCGGCTTTGAAGAGCT
TATCAACCAACGAGAAAATTCGTTTCAAGCTGTTCATCAAATTCCGACAA
TATTCAATCATTTAGTAAATGGAAACCAAGCACCTTTCAAAACTGCTATT
TCAGATTTTATACAGATAACTTCAAATTTGACAGCTTTTTAATACGGATt
ctatttaactttttgttggTTCCTTGCCAGTTGAAATACCAATGCTTCTA
TTATTTacgatgttttgattttgcaggATGTTTTGCAGTccatttaaata
aaatttgctTTAAACATGCAGAG Run BLAST on NCBI protein sequence of TCONS_00010899-protein >TCONS_00010899-protein ID=TCONS_00010899-protein|Name=TCONS_00010899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MMTGFIKQKYNVSIGQNRIASALAQVAPNYNQRRRTNTARLINPIPYQAD
YFGHKLHVDQNEKLIRYGVTHVCAIDGHSRFIVAGTTMPIKNNLTIYKDV
YKKSALEHGMFHQVRVDCGKEFYLMLGIQELYAHLRGDNSMLPYRQTQSK
KNLPIERIWVEVNSRVNYPLKEALVEMDNTLQIDMENDAFKFCVSEVSCR
VANYGLNVVISSWNQHPISGRGVPSTIKERTNRLQPLNVNDIPEPLEAKQ
MYETIYLGRLTEESHFGIDPLVGFEELINQRENSFQAVHQIPTIFNHLVN
GNQAPFKTAISDFIQITSNLTAF Run BLAST on NCBI transcript from alignment at sc0000118:43188..45098- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010899 ID=TCONS_00010899|Name=TCONS_00010899|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at sc0000118:43188..45098- (Clytia hemisphaerica)
CATTATTCTACTTGCTTTTCCATTGTCGTAAATGATCCCAAATCTCACAC
TTATATAATTTTTATAAGAGTTATTCTTATAAGTACAAAAGCGTGTATTA
AAAAGATAACAATTCGTTTTATAACAAAGAAACTACTTCTTTTAAGGTTG
GACCAACGTATGGAAGAAAAATGATGACTGGTTTCATTAAACAAAAGTAC
AATGTGTCGATAGGTCAGAACAGAATAGCTTCTGCTCTCGCTCAAGTTGC
TCCAAACTACAATCAACGTCGACGAACAAATACTGCTCGTTTGATTAATC
CGATCCCATACCAAGCTGACTACTTTGGTCATAAGTTACATGTAGACCAA
AATGAAAAATTGATTCGGTATGGTGTCACGCATGTTTGTGCCATTGACGG
ACACAGTAGATTTATTGTAGCGGGCACGACTATGCCAATTAAGAACAACC
TCACAATTTACAAAGATGTTTACAAGTTAGTTAGTTTTACATCAACATTG
CAACCTAATGTAATTTTTAACAATTTATGAAACTGTTAAAGAATAATGAT
TGCTTTTCTTACTTCCAAGCTTAGGCACGGTACGGCACTCTTCATAGTGG
GGCAATTTTATAAAGTAATGCTGACCTTGTTATTAAAAAGTTGACTAAAG
AATATATAATAGAACACTCATTTTGCATTGTGAAACACAAAGACACTTTC
TAGGACCTAAAATTACCCCATACTCATTATTTATCTTTAGAAAATCTGCA
CTGGAGCACGGAATGTTTCATCAAGTTAGAGTCGATTGTGGTAAAGAATT
TTATTTAATGCTTGGAATTCAAGAATTATATGCCCATCTACGAGGAGATA
ACAGCATGCTCCCATACAGACAAACTCAATCTAAGAAGGTACACAGTTAA
CACATTTTCATCTTTCTGCTAGTTGCCCTCTCCTGCAATCCTAAAAAGTC
GAATTTACAAAGAATCGAAGAATCTTTCCAATTTAAAACACACTTAGCAA
GAACGCTACTCGTGGGGGCCCTACTTTGGGTTGTGGAAGTAGTAAATCCA
CGAAGACTATGTTTGTATTTTTTATTCTATTTTGTTTATTATTTTTCTTT
GAGAATTTGCCAATTGAACGTATTTGGGTTGAAGTAAACTCCAGGGTAAA
TTACCCCTTGAAGGAAGCATTGGTTGAGATGGACAACACACTTCAAATTG
ATATGGAAAATGACGCATTTAAATTTTGTGTATCAGAAGTGAGTTGTCGG
GTTGCAAATTACGGTCTTAACGTTGTAATATCATCTTGGAATCAACACCC
TATCTCAGGTTATATTTTTACTCTCGACTCTTTAAGTTTTCATAATTGCC
ATAAACCTGAAAGCAAAAGTTTCATTCCATTTTAAAATTCGTATGATGTT
TATCTGTCTTTTTATCATATTATTAGGACTTCCTAAAAAACAAACGATAT
TTATTTTTATTTTAAGGCCGTGGTGTTCCTTCAACGATAAAAGAACGGAC
AAACAGGTTACAACCCTTGAATGTCAATGATATTCCAGAACCTTTGGAAG
CAAAACAGATGTACGAAACTATCTATTTGGGAAGGTTGACAGAGGAGAGT
CATTTTGGTATTGATCCATTGGTCGGCTTTGAAGAGCTTATCAACCAACG
AGAAAATTCGTTTCAAGCTGTTCATCAAATTCCGACAATATTCAATCATT
TAGTAAATGGAAACCAAGCACCTTTCAAAACTGCTATTTCAGATTTTATA
CAGATAACTTCAAATTTGACAGCTTTTTAATACGGATTCTATTTAACTTT
TTGTTGGTTCCTTGCCAGTTGAAATACCAATGCTTCTATTATTTACGATG
TTTTGATTTTGCAGGATGTTTTGCAGTCCATTTAAATAAAATTTGCTTTA
AACATGCAGAG Coding sequence (CDS) from alignment at sc0000118:43188..45098- >TCONS_00010899 ID=TCONS_00010899|Name=TCONS_00010899|organism=Clytia hemisphaerica|type=CDS|length=3888bp|location=Sequence derived from alignment at sc0000118:43188..45098- (Clytia hemisphaerica)
GCCGTGGTGTTCCTTCAACGATAAAAGAACGGACAAACAGGTTACAACCC
TTGAATGTCAATGATATTCCAGAACCTTTGGAAGCAAAACAGATGTACGA
AACTATCTATTTGGGAAGGTTGACAGAGGAGAGTCATTTTGGTATTGATC
CATTGGTCGGCTTTGAAGAGCTTATCAACCAACGAGAAAATTCGTTTCAA
GCTGTTCATCAAATTCCGACAATATTCAATCATTTAGTAAATGGAAACCA
AGCACCTTTCAAAACTGCTATTTCAGATTTTATACAGATAACTTCAAATT
TGACAGCTTTTTAAAATTTGCCAATTGAACGTATTTGGGTTGAAGTAAAC
TCCAGGGTAAATTACCCCTTGAAGGAAGCATTGGTTGAGATGGACAACAC
ACTTCAAATTGATATGGAAAATGACGCATTTAAATTTTGTGTATCAGAAG
TGAGTTGTCGGGTTGCAAATTACGGTCTTAACGTTGTAATATCATCTTGG
AATCAACACCCTATCTCAGAAAATCTGCACTGGAGCACGGAATGTTTCAT
CAAGTTAGAGTCGATTGTGGTAAAGAATTTTATTTAATGCTTGGAATTCA
AGAATTATATGCCCATCTACGAGGAGATAACAGCATGCTCCCATACAGAC
AAACTCAATCTAAGAAGATGATGACTGGTTTCATTAAACAAAAGTACAAT
GTGTCGATAGGTCAGAACAGAATAGCTTCTGCTCTCGCTCAAGTTGCTCC
AAACTACAATCAACGTCGACGAACAAATACTGCTCGTTTGATTAATCCGA
TCCCATACCAAGCTGACTACTTTGGTCATAAGTTACATGTAGACCAAAAT
GAAAAATTGATTCGGTATGGTGTCACGCATGTTTGTGCCATTGACGGACA
CAGTAGATTTATTGTAGCGGGCACGACTATGCCAATTAAGAACAACCTCA
CAATTTACAAAGATGTTTACAAGCCGTGGTGTTCCTTCAACGATAAAAGA
ACGGACAAACAGGTTACAACCCTTGAATGTCAATGATATTCCAGAACCTT
TGGAAGCAAAACAGATGTACGAAACTATCTATTTGGGAAGGTTGACAGAG
GAGAGTCATTTTGGTATTGATCCATTGGTCGGCTTTGAAGAGCTTATCAA
CCAACGAGAAAATTCGTTTCAAGCTGTTCATCAAATTCCGACAATATTCA
ATCATTTAGTAAATGGAAACCAAGCACCTTTCAAAACTGCTATTTCAGAT
TTTATACAGATAACTTCAAATTTGACAGCTTTTTAAAATTTGCCAATTGA
ACGTATTTGGGTTGAAGTAAACTCCAGGGTAAATTACCCCTTGAAGGAAG
CATTGGTTGAGATGGACAACACACTTCAAATTGATATGGAAAATGACGCA
TTTAAATTTTGTGTATCAGAAGTGAGTTGTCGGGTTGCAAATTACGGTCT
TAACGTTGTAATATCATCTTGGAATCAACACCCTATCTCAGAAAATCTGC
ACTGGAGCACGGAATGTTTCATCAAGTTAGAGTCGATTGTGGTAAAGAAT
TTTATTTAATGCTTGGAATTCAAGAATTATATGCCCATCTACGAGGAGAT
AACAGCATGCTCCCATACAGACAAACTCAATCTAAGAAGATGATGACTGG
TTTCATTAAACAAAAGTACAATGTGTCGATAGGTCAGAACAGAATAGCTT
CTGCTCTCGCTCAAGTTGCTCCAAACTACAATCAACGTCGACGAACAAAT
ACTGCTCGTTTGATTAATCCGATCCCATACCAAGCTGACTACTTTGGTCA
TAAGTTACATGTAGACCAAAATGAAAAATTGATTCGGTATGGTGTCACGC
ATGTTTGTGCCATTGACGGACACAGTAGATTTATTGTAGCGGGCACGACT
ATGCCAATTAAGAACAACCTCACAATTTACAAAGATGTTTACAAGCCGTG
GTGTTCCTTCAACGATAAAAGAACGGACAAACAGGTTACAACCCTTGAAT
GTCAATGATATTCCAGAACCTTTGGAAGCAAAACAGATGTACGAAACTAT
CTATTTGGGAAGGTTGACAGAGGAGAGTCATTTTGGTATTGATCCATTGG
TCGGCTTTGAAGAGCTTATCAACCAACGAGAAAATTCGTTTCAAGCTGTT
CATCAAATTCCGACAATATTCAATCATTTAGTAAATGGAAACCAAGCACC
TTTCAAAACTGCTATTTCAGATTTTATACAGATAACTTCAAATTTGACAG
CTTTTTAAAATTTGCCAATTGAACGTATTTGGGTTGAAGTAAACTCCAGG
GTAAATTACCCCTTGAAGGAAGCATTGGTTGAGATGGACAACACACTTCA
AATTGATATGGAAAATGACGCATTTAAATTTTGTGTATCAGAAGTGAGTT
GTCGGGTTGCAAATTACGGTCTTAACGTTGTAATATCATCTTGGAATCAA
CACCCTATCTCAGAAAATCTGCACTGGAGCACGGAATGTTTCATCAAGTT
AGAGTCGATTGTGGTAAAGAATTTTATTTAATGCTTGGAATTCAAGAATT
ATATGCCCATCTACGAGGAGATAACAGCATGCTCCCATACAGACAAACTC
AATCTAAGAAGATGATGACTGGTTTCATTAAACAAAAGTACAATGTGTCG
ATAGGTCAGAACAGAATAGCTTCTGCTCTCGCTCAAGTTGCTCCAAACTA
CAATCAACGTCGACGAACAAATACTGCTCGTTTGATTAATCCGATCCCAT
ACCAAGCTGACTACTTTGGTCATAAGTTACATGTAGACCAAAATGAAAAA
TTGATTCGGTATGGTGTCACGCATGTTTGTGCCATTGACGGACACAGTAG
ATTTATTGTAGCGGGCACGACTATGCCAATTAAGAACAACCTCACAATTT
ACAAAGATGTTTACAAGCCGTGGTGTTCCTTCAACGATAAAAGAACGGAC
AAACAGGTTACAACCCTTGAATGTCAATGATATTCCAGAACCTTTGGAAG
CAAAACAGATGTACGAAACTATCTATTTGGGAAGGTTGACAGAGGAGAGT
CATTTTGGTATTGATCCATTGGTCGGCTTTGAAGAGCTTATCAACCAACG
AGAAAATTCGTTTCAAGCTGTTCATCAAATTCCGACAATATTCAATCATT
TAGTAAATGGAAACCAAGCACCTTTCAAAACTGCTATTTCAGATTTTATA
CAGATAACTTCAAATTTGACAGCTTTTTAAAATTTGCCAATTGAACGTAT
TTGGGTTGAAGTAAACTCCAGGGTAAATTACCCCTTGAAGGAAGCATTGG
TTGAGATGGACAACACACTTCAAATTGATATGGAAAATGACGCATTTAAA
TTTTGTGTATCAGAAGTGAGTTGTCGGGTTGCAAATTACGGTCTTAACGT
TGTAATATCATCTTGGAATCAACACCCTATCTCAGAAAATCTGCACTGGA
GCACGGAATGTTTCATCAAGTTAGAGTCGATTGTGGTAAAGAATTTTATT
TAATGCTTGGAATTCAAGAATTATATGCCCATCTACGAGGAGATAACAGC
ATGCTCCCATACAGACAAACTCAATCTAAGAAGATGATGACTGGTTTCAT
TAAACAAAAGTACAATGTGTCGATAGGTCAGAACAGAATAGCTTCTGCTC
TCGCTCAAGTTGCTCCAAACTACAATCAACGTCGACGAACAAATACTGCT
CGTTTGATTAATCCGATCCCATACCAAGCTGACTACTTTGGTCATAAGTT
ACATGTAGACCAAAATGAAAAATTGATTCGGTATGGTGTCACGCATGTTT
GTGCCATTGACGGACACAGTAGATTTATTGTAGCGGGCACGACTATGCCA
ATTAAGAACAACCTCACAATTTACAAAGATGTTTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010899-exon-sc0000118-1575043694:44624..45098 | TCONS_00010899-exon-sc0000118-1575043694:44624..45098 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1575043694:44211..44358 | TCONS_00010899-exon-sc0000118-1575043694:44211..44358 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1575043694:43791..43995 | TCONS_00010899-exon-sc0000118-1575043694:43791..43995 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1575043694:43188..43632 | TCONS_00010899-exon-sc0000118-1575043694:43188..43632 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1510915933:44624..45098 | TCONS_00010899-exon-sc0000118-1510915933:44624..45098 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1510915933:44211..44358 | TCONS_00010899-exon-sc0000118-1510915933:44211..44358 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1510915933:43791..43995 | TCONS_00010899-exon-sc0000118-1510915933:43791..43995 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1510915933:43188..43632 | TCONS_00010899-exon-sc0000118-1510915933:43188..43632 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1491911889:44624..45098 | TCONS_00010899-exon-sc0000118-1491911889:44624..45098 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1491911889:44211..44358 | TCONS_00010899-exon-sc0000118-1491911889:44211..44358 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1491911889:43791..43995 | TCONS_00010899-exon-sc0000118-1491911889:43791..43995 | Clytia hemisphaerica | exon |
| TCONS_00010899-exon-sc0000118-1491911889:43188..43632 | TCONS_00010899-exon-sc0000118-1491911889:43188..43632 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:43188..45098 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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