TCONS_00011128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011128
Unique NameTCONS_00011128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011128 ID=TCONS_00011128|Name=TCONS_00011128|organism=Clytia hemisphaerica|type=transcript|length=1901bp
ttttatttatttaacaaCGTTCCTGATCGTAGATAATAGCGTGTTCCGTC
CCTAAATCCAACATCGTGGTTCATAAATTTAGAGACGCGCTGATATTTCA
GCACGTTATCAAATAATTCTAAAGCTCCGTACTGTtaatgaatttttcaa
aacaaaacaaaaagatggcGGAGGCAAAACCCACAACAAGTCCAACTCCA
AAAGGTATTTTAAAACATAATCATGAGCATAATCCACATCCTGAAGTCAA
GTTCGATGAAATGAATATTTTAGAGACCTACCATccagcaaacaaagatt
atGGTCATATGAAAATCGATGAACCACCAACACCTTACAATCACGAGttt
tctGAAGGAGAAGAAGGTGCTGAAGGAGGGTCATCTGCTGGTAGTGGTGT
TAGTGGTGTTGATGCAAGTCTGTTGGCTGGTAAACTAGAGAGTACTGAAT
CACGGAAAGACCAtcaaagtgaaagtgaaaatgaagatgacgaTGATGAA
CATTTAAGTGAAGCTGCAAAACTAAAAAAGAAAGCGTTTAGCAGTAAGAG
GAAAAATCATTATAATGAATTTACAAATGTACAAAAAGCACGCGAAATGA
TTGCTAAAGAGTTAGCTGAATTGGAAGATGATAATTAAGAATGGTGGTAG
AGTGCGGGAAAAacgaaatttgattgaatttttaatttataaacACTTGA
TTGAAAGTCACCATCATGTGGTTTGTTGCTAAAAAGATATGAATTTATTA
TTAGGTTGATTTACGAAAATTAGAATCATGAAATTGGAAAGCTAATGAAG
ACTTAAAAACAACTTTGTCATTTAAactgacattaaaaataataaacatA
AATGTTGATATGTATATTATAATATACATATTATAATAGTTCatagattt
tttctcaatttatcCCTCCCTCCATTATACAtagtttttttaaagcaaat
ttcTAATGCACCTTTTAGGAATTTCTACTTGTCATTTTTCactatttaaa
attttattcaaaaattctGTTACAGGGTTTTTTAGAGTTGTCTTGAGTTG
TGTCTAAAAGACACTTTTGCGAATAGCTCTTGGTATACCGTAGCAAACAA
ACGTTTAAAACCAAAcgtaatttcattttcttttcatcaaTATATCCTTA
GCTAGGGGAGGGGGGATACCAGGTgatactaggtttgcgaggtgacgggt
atgtccaaggcaaaaaattttttggagaGAGTaaaaattggcgtttttgg
GACTCTAAGAGAGACGTTTCTCAAAAGTTTTGTAGATTTTCGCTCGTTTT
tgaaaatcacgaccctttgagagaagaaattttggacccttacaaagact
caatttgctttttaatggtttttgtacccctttgagagactttcgatgTT
GTGAAAAAAGGAGTCTTATgcctcgcacatacccggcccccattttgcct
aagtgcccccccccctcggaTCCTCTTTAAATGTGTAGCGTGCCTATATA
GACCTTCCACTATATGTGGTACACGATTTTAATTGAGAAATGTTTTTTTC
GGGCTTATGGGCTTATAATATATCCTAAAAAATGGTTTGAACCAACTTTA
ACTTACAGAAACTGAGTGCTTTTTGGGGTGTACTAAgtgacaaagaattt
tttcgtTATCTGGTTACCCACATTTGAGTTTCTTTTAGGATTTTTGTGTT
TGTAAAGAATGTTTATTTGTGATATTATAGTAGTAATATTAGTAGTATTA
AAATTGTAACATATTTCTTCAGACACACATTTAGTATAACATGAAATTAT
ACTTGAAAGCATTGGAATCATAACTGAGTTGTGAGGTTCACAGTTTCTCT
ATCGtgctaaaatcgaaatatatcGCCATAGATTTGAATGTCTATTTAAC
C
Run BLAST on NCBI

transcript from alignment at sc0000121:240160..244785-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011128 ID=TCONS_00011128|Name=TCONS_00011128|organism=Clytia hemisphaerica|type=transcript|length=4626bp|location=Sequence derived from alignment at sc0000121:240160..244785- (Clytia hemisphaerica)
TTTTATTTATTTAACAACGTTCCTGATCGTAGATAATAGCGTGTTCCGTC
CCTAAATCCAACATCGTGGTTCATAAATTTAGAGACGCGCTGATATTTCA
GCACGTTATCAAATAATTCTAAAGCTCCGTACTGTTAATGAATTTTTCAA
AACAAAACAAAAAGATGGCGGAGGCAAAACCCACAACAAGTCCAACTCCA
AAAGGTATTTTAAAACATAATCATGAGCATAATCCACATCCTGAAGTCAA
GTTCGATGAAATGAATATTTTAGAGACCTACCATCCAGCAAACAAAGATT
ATGGTCATATGAAAATCGATGAACCACCAACACCTTACAATCACGAGGTA
AAAAAGTTTGGTGTTGTGTTTTTTATTTTAGATGGTTCAGTTTTTGATAG
TTTGTGTCCATTTTTTATTTAAAGACTATTAGAATATTAAAGAAGGGGTA
AAATAACTTTCAAAATACAAGTGCAAAGATGCCCCAACTTCAGTAGCAAC
GTCCATTTTGTGTGTTCTGGTGCGTGTGCTGAGTGAGATAAAAAATTGAG
ACAATCTCAATGACAATGATGGCAATAGGTTGCAATAAACCTTTAATGTG
ACATTCTATTCTAAGCCTTTAGATGCTTTCCCAATTTGGGAATTTAAGAA
AGTGAATGTCAAGATAAAGGGCCAAAGTTTATGCTCGCATGAGAAAAGTT
TTTAACAAAATAGAAAATCTGTATCTTTAATTAACTTCTAGAACTTGAAA
AAAAGTGTAAGATTTTAGGCATTTTATCCTTTTAAAACTTTTTAAGTCAA
AAGGCAAATGCTACAGCTCTTCTCAAGAATAATTTGTCCCTTTAATCCAT
TTTTTGTATGGAAATATTATTTTCATATATCTTGATTTGCTAAAGTTACT
GCTCGGGAAAGTTTATACGTCTAAATCACGAAAATGTAATGTATTACTGT
CAACTGATGTAACTTGGGACTATCTGACAAAACATGGGACGGTAATTCGG
CCACCATTTCACTGAACCTCCGAAGTTATGATTTGAGTTAATGAACGGCG
TATTAAAAATACACGATTTCTCTTTCGTACCAAGTAGGCTTTTAAATCAA
ATATGAAAAAAATCTGTAGTGGACCACACACAAGTGTCTGTGCACTTTAA
GAGGAATGAAGAAGTATGATTGACAGTCTGGGAAATCCTCTCAATTGCAC
GCTTATGTTCCGAGGCCGTAAGTGCGCAATTGCACGGTTATCAAAATGGC
AGAATTTTTAAGCGTGTAATTACACGCTTATCGAAATTGTAACGGGCGAA
AGCCTAGGGCAGTTTTACTCAAAATTTATCGTAGAAGAAGATTCTGTAAA
AATGGATTGCCCGTTAAACCATGCCTTCGCCCGAATTAGAGAATTCTGAA
CCCCTTGAAATCCCTAAGCAATTTCAACCGGGGCGGGAGCAGGCGTAAAT
TATAACCATGCAATTGCGCGCTTACGCCCTCGGAACATAAGCGTGCAATT
GAGAGGATTTCCCGGACTGATTGATAAACTTGGTGGAGTTATCAAAACAA
ATTTAAAAGAGATTTAACAGTAAGAGAAAATACAGGCCAGATATCAACCA
GTCCCATGTTTCGACCAATTGTCCCCAGTTAGAGCAGTTGACGGTAGGGC
TATCTGACAAAACATGTGACAGCAATTCGGCCTACATTTCACCAAACCGC
CAAAGTCATTTTATTAACATACCTGCGAATCATGGATAGCAAATAATGTA
AATACGCTACTCTACCAGGAAGGCTTAATTACACCACAACCAAACAGTTA
GTCACACTAGGAAATCAAGCTTTCAGAAAAGACTAACATCAGTCATCTAC
AGGATGTATTTGCAACAACAAGGATGAGAATTACCTGAATCAAGTTTGCA
AGACAATTAATTAAAACTTGAAAGTTTGAAACAAAATAAAGCGTGCAGCA
GCCAAAATCAACCAACAAAAATTTGTCATTTAATTCCTGAGACAGCACTT
TGATTTTTAAGGCCTTGTTTATACGCTAAAGTAAAAATAATTCTGTACAT
GTAAATGGGTCAGTGTTTGTGGTCCGGCAAAATTTCCGGAGAAATAGCCT
ATCTGGCAGTGTGCAGACATAGGTGGGTTCCGTCTCCCCCGTAGATCTTT
TTATTGGGAAGTTGATCTTCAAATTAGTTCTGAAGGTTGGCTTGGCTCAA
ATCTTTTCATCTATGGCTCAAATGTTAGGAAATTTCTCATAGTTTTTGAG
AATGTTGATTTCATTAAAAAGCGCCGGGTTATTTTTTCATGAATCCCTTT
AGAAGTTTTGTGGCGCATTTTCCTGCTTGAGAGTCAGGTAAACGATATAG
CGTTTTCGCAACATTAATCTTTGATAAGTATTTTGGCGGGACGCTAGTGT
GACTAACTGTCAAAAGGAAAAATCTTTGCTACAAGAAACGCGTAAATGTG
ATTGTGCTTATTTGCGCAAGCGTTCAAACACAGATACCAAAAAAGTCTGT
TCTTCCACCACAGAAAATTGTGAGATCTGTTAATCAACACTCTGTAACTT
TGACATGTCACATAGTGTCCTCCAGGGTTTGTTCCCCCCACCAGGGTTTG
TTCCCCCCACCAGGGTTTGTTCCCCCCAGAAAATTCTGAAAATATCAGTT
CCCCCCATGTAGCCATATAAATTTCTCAAATTTCAACCTGACACAAACGT
GAAATTTTGCTGCAGTTTTTATGCCTAGTGAATTTTTCAGTCATGATCTA
ATCACATGATATCATGTGGACTGACCTTGGTTGTTAAGATAAAGTTGAAG
TGATTTCACACTTTCCCCCACCAAATTTGCCAACTATCGATGTTTTCCCC
CCTCTTTTTTCCCCCCTTTACTATTCAAATTTTCATTCCCCCCCCCTCAC
CCATCCAAAATTGGAAAATTGGTTTCCCCTATGGACACTATGCTGTGAAT
CAATCGCGCATGCTGGAAAAAGTCTCTAGAGAAAAACAACACAAATCAAA
AAATGGCGTCAAGATGTGAGCAGCCTGTGTTTTGTGTTTATATCAAAGTT
ATTGTTTTTCTTTTCTTTTTAGTTTTCTGAAGGAGAAGAAGGTGCTGAAG
GAGGGTCATCTGCTGGTAGTGGTGTTAGTGGTGTTGATGCAAGTCTGTTG
GCTGGTAAACTAGAGAGTACTGAATCACGGAAAGACCATCAAAGTGAAAG
TGAAAATGAAGATGACGATGATGAACATTTAAGTGAAGCTGCAAAACTAA
AAAAGAAAGCGTTTAGCAGTAAGAGGAAAAATCATTATAATGAATTTACA
AATGTACAAAAAGCACGCGAAATGATTGCTAAAGAGTTAGCTGAATTGGA
AGATGATAATTAAGAATGGTGGTAGAGTGCGGGAAAAACGAAATTTGATT
GAATTTTTAATTTATAAACACTTGATTGAAAGTCACCATCATGTGGTTTG
TTGCTAAAAAGATATGAATTTATTATTAGGTTGATTTACGAAAATTAGAA
TCATGAAATTGGAAAGCTAATGAAGACTTAAAAACAACTTTGTCATTTAA
ACTGACATTAAAAATAATAAACATAAATGTTGATATGTATATTATAATAT
ACATATTATAATAGTTCATAGATTTTTTCTCAATTTATCCCTCCCTCCAT
TATACATAGTTTTTTTAAAGCAAATTTCTAATGCACCTTTTAGGAATTTC
TACTTGTCATTTTTCACTATTTAAAATTTTATTCAAAAATTCTGTTACAG
GGTTTTTTAGAGTTGTCTTGAGTTGTGTCTAAAAGACACTTTTGCGAATA
GCTCTTGGTATACCGTAGCAAACAAACGTTTAAAACCAAACGTAATTTCA
TTTTCTTTTCATCAATATATCCTTAGCTAGGGGAGGGGGGATACCAGGTG
ATACTAGGTTTGCGAGGTGACGGGTATGTCCAAGGCAAAAAATTTTTTGG
AGAGAGTAAAAATTGGCGTTTTTGGGACTCTAAGAGAGACGTTTCTCAAA
AGTTTTGTAGATTTTCGCTCGTTTTTGAAAATCACGACCCTTTGAGAGAA
GAAATTTTGGACCCTTACAAAGACTCAATTTGCTTTTTAATGGTTTTTGT
ACCCCTTTGAGAGACTTTCGATGTTGTGAAAAAAGGAGTCTTATGCCTCG
CACATACCCGGCCCCCATTTTGCCTAAGTGCCCCCCCCCCTCGGATCCTC
TTTAAATGTGTAGCGTGCCTATATAGACCTTCCACTATATGTGGTACACG
ATTTTAATTGAGAAATGTTTTTTTCGGGCTTATGGGCTTATAATATATCC
TAAAAAATGGTTTGAACCAACTTTAACTTACAGAAACTGAGTGCTTTTTG
GGGTGTACTAAGTGACAAAGAATTTTTTCGTTATCTGGTTACCCACATTT
GAGTTTCTTTTAGGATTTTTGTGTTTGTAAAGAATGTTTATTTGTGATAT
TATAGTAGTAATATTAGTAGTATTAAAATTGTAACATATTTCTTCAGACA
CACATTTAGTATAACATGAAATTATACTTGAAAGCATTGGAATCATAACT
GAGTTGTGAGGTTCACAGTTTCTCTATCGTGCTAAAATCGAAATATATCG
CCATAGATTTGAATGTCTATTTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006229XLOC_006229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011128-exon-sc0000121-1575043694:244439..244785TCONS_00011128-exon-sc0000121-1575043694:244439..244785Clytia hemisphaericaexon
TCONS_00011128-exon-sc0000121-1575043694:240160..241713TCONS_00011128-exon-sc0000121-1575043694:240160..241713Clytia hemisphaericaexon
TCONS_00011128-exon-sc0000121-1510915933:244439..244785TCONS_00011128-exon-sc0000121-1510915933:244439..244785Clytia hemisphaericaexon
TCONS_00011128-exon-sc0000121-1510915933:240160..241713TCONS_00011128-exon-sc0000121-1510915933:240160..241713Clytia hemisphaericaexon
TCONS_00011128-exon-sc0000121-1491911889:244439..244785TCONS_00011128-exon-sc0000121-1491911889:244439..244785Clytia hemisphaericaexon
TCONS_00011128-exon-sc0000121-1491911889:240160..241713TCONS_00011128-exon-sc0000121-1491911889:240160..241713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:240160..244785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.2125	20.1818	6.93843	5.57426	30.7967	23.4651	26.367	26.7482	19.4476	13.5824	13.8192	11.6111	6.99397	6.02463	7.31675	7.24301	13.6386	10.9736	6.17542	7.16121	14.7004	12.6512	11.2076	12.1497	10.9546	11.2347	12.0067	5.80176	7.12232	6.20892
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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