TCONS_00011142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011142
Unique NameTCONS_00011142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011142 ID=TCONS_00011142|Name=TCONS_00011142|organism=Clytia hemisphaerica|type=transcript|length=550bp
TCAGAGTATCGAGGAGTCAGATCCTCCAAACATCAGTGGTGCAAGCGTTC
ACTATCATCTTGTTCCTGTTAATTGCAAATGGAATCTTATTTGTCACTTT
CACTCGAGAATCACCAGCAATCGATTCTTGGTTAGATGACAATCAAATGC
AACGTATCCATTACTGCAACACCAATTACCACATCAATGTCATGGTCGCC
TTTGTCACCATCCTAcaaatgttttgttttctcCAAGCTTACCGTGGTAG
AAATTTACCAGGTCCAATGAATACAGCAATGTCATTGGTCTACGCCATTC
TAATAATCACTGTCAATTTCTTGATCTCTTTCCCCATCAGCTATTTCCTG
GATCAAATTGATCGCTTGTTCACACATTTGATCGTCCTTATTATCAATTG
CATCGTGATTGTTAGTCTTTTGTATGGCTACAAATGTTACATTATCATCT
TCAAGCCCCACAAAAATACGAGATTGTATTTCCATCATCAGAGAATAAAG
GCTATAGCAACTTTTGATTTCCATGGCGGTAGAAGCAGAGTACATGGTTC
Run BLAST on NCBI

protein sequence of TCONS_00011142-protein

>TCONS_00011142-protein ID=TCONS_00011142-protein|Name=TCONS_00011142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
RVSRSQILQTSVVQAFTIILFLLIANGILFVTFTRESPAIDSWLDDNQMQ
RIHYCNTNYHINVMVAFVTILQMFCFLQAYRGRNLPGPMNTAMSLVYAIL
IITVNFLISFPISYFLDQIDRLFTHLIVLIINCIVIVSLLYGYKCYIIIF
KPHKNTRLYFHHQRIKAIATFDFHGGRSRVHG
Run BLAST on NCBI

transcript from alignment at sc0000121:79578..80127

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011142 ID=TCONS_00011142|Name=TCONS_00011142|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0000121:79578..80127 (Clytia hemisphaerica)
GAACCATGTACTCTGCTTCTACCGCCATGGAAATCAAAAGTTGCTATAGC
CTTTATTCTCTGATGATGGAAATACAATCTCGTATTTTTGTGGGGCTTGA
AGATGATAATGTAACATTTGTAGCCATACAAAAGACTAACAATCACGATG
CAATTGATAATAAGGACGATCAAATGTGTGAACAAGCGATCAATTTGATC
CAGGAAATAGCTGATGGGGAAAGAGATCAAGAAATTGACAGTGATTATTA
GAATGGCGTAGACCAATGACATTGCTGTATTCATTGGACCTGGTAAATTT
CTACCACGGTAAGCTTGgagaaaacaaaacatttgTAGGATGGTGACAAA
GGCGACCATGACATTGATGTGGTAATTGGTGTTGCAGTAATGGATACGTT
GCATTTGATTGTCATCTAACCAAGAATCGATTGCTGGTGATTCTCGAGTG
AAAGTGACAAATAAGATTCCATTTGCAATTAACAGGAACAAGATGATAGT
GAACGCTTGCACCACTGATGTTTGGAGGATCTGACTCCTCGATACTCTGA

Coding sequence (CDS) from alignment at sc0000121:79578..80127

>TCONS_00011142 ID=TCONS_00011142|Name=TCONS_00011142|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000121:79578..80127 (Clytia hemisphaerica)
ACCATGTACTCTGCTTCTACCGCCATGGAAATCAAAAGTTGCTATAGCCT
TTATTCTCTGATGATGGAAATACAATCTCGTATTTTTGTGGGGCTTGAAG
ATGATAATGTAACATTTGTAGCCATACAAAAGACTAACAATCACGATGCA
ATTGATAATAAGGACGATCAAATGTGTGAACAAGCGATCAATTTGATCCA
GGAAATAGCTGATGGGGAAAGAGATCAAGAAATTGACAGTGATTATTAGA
ATGGCGTAGACCAATGACATTGCTGTATTCATTGGACCTGGTAAATTTCT
ACCACGGTAAGCTTGgagaaaacaaaacatttgTAGGATGGTGACAAAGG
CGACCATGACATTGATGTGGTAATTGGTGTTGCAGTAATGGATACGTTGC
ATTTGATTGTCATCTAACCAAGAATCGATTGCTGGTGATTCTCGAGTGAA
AGTGACAAATAAGATTCCATTTGCAATTAACAGGAACAAGATGATAGTGA
ACGCTTGCACCACTGATGTTTGGAGGATCTGACTCCTCGATACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006238XLOC_006238Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011142-proteinTCONS_00011142-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011142-exon-sc0000121-1491911889:79578..80127TCONS_00011142-exon-sc0000121-1491911889:79578..80127Clytia hemisphaericaexon
TCONS_00011142-exon-sc0000121-1510915933:79578..80127TCONS_00011142-exon-sc0000121-1510915933:79578..80127Clytia hemisphaericaexon
TCONS_00011142-exon-sc0000121-1575043694:79578..80127TCONS_00011142-exon-sc0000121-1575043694:79578..80127Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:79578..80127 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.728282	0.608734	1.767	0.806741	0	0	0.13376	0	0.0876728	0	0	0	0	0.359293	0	0	0.468616	1.04069	0	0.231464	2.91717	2.35513	0.238581	0.325357	0.33511	0.199385	0	0	0.115477	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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