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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011161 ID=TCONS_00011161|Name=TCONS_00011161|organism=Clytia hemisphaerica|type=transcript|length=1599bp
atcctatgaaataggatAGCACCGATTTCTTACTCAAAAAAGCCGTCTCA
GATGTGAAAAAATGAGCGATTCAGTGTACCAGCGACGTCACGCCTTCAGT
ATCACTTTTATCAGTTTCTAtatcatttttatcaaataagttgaaaatgA
AAGGAAATTCTAAAGTATGTTTTgttatataatttttatcaaatttcttt
CACATTTAGATGTTTCGCCAAATATCCAGACAGCGTTAAAGACTTCTTCA
AATCAGCAATGCCAGACGGTTACATCCAAGAAAAGACCATCAGCTTCGAA
AATGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAACATGGTTC
TATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAAAGACGGAc
tcattcttcaaaaacaatACGAATTTTGCTGTCCGAATAATGCAGTTTAC
GTTTTGCCGGACAAAGAAAACAACGGACTCCGTGTTGTTTATAATACAAT
CTACAAATTGAAAGATGGAGGACATCATTTGGCTGCACACGAACAACAGA
ATACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAACTATCATCATATT
CATGCTGGAAGCATCTTCTCGAAAGATCTCGAAGAAACACGAGACCACAT
GTGTTTGGTCGAAACTGTCAGAGCTGTAAATCTTGAAACATACAACtgaa
ttattttattatttattatgctaatataagatttattttgtttcctacaa
atcttttttatctaaaaaggtataatatttgtaattttcggtctttcaat
tttttcacatttgtctttgatttttaaagaaagaaactgaataaaagata
ttcttttttactttttacatttttaccaTGTGTTTTGGTTAATCTGAATC
GCAGCAACTATCTatatatacttcctatataggATCCGATCTACCAATTA
TGAAGCAGCCTCTACAGCATAGCTTATGTTTTTGTCTGAATTGTCAccta
ttgaaattttcaatgtCAAGAGATTTGATTCCTACATAGTGTGAACACCT
GAAGAGCTGctgaattctttctttttcacttttgaaCAAGGCCGCAATAA
TCTTGTTATTCTTAAATGCCTTATAACACAGTGTACGtttctttttaaga
acaaactatacaactATACAAGAACTTAAGGCTTCGAAGGTCaaggcttc
aaactcaaaaagttaagatcaTCCAAAGGCTTCCAAAACTTTGGATATTC
CTGTAAACGTGAATGGGTTAATATGGCCTAATTTTCCTTGAAGAACTTGT
AATCATATTATTACGTTAATTTTATCTGAAGTTTTCTATCGTAATGATTG
ATGTCCGCCTGTAATCCGATAATAGGCCAGCTAATGAAATAACTCAATCA
GCGACAAGATACAGTTAATTATAATAGAGTTGTATAATATAGATCTTAAA
CCAAAGAGGCACTAGAGAAATAGAATATAAACATCAATCGAAGCTCCTAA
AAGTTTGGTTTGTTGATGATTTGTAAAAGAAAAAGGTTTCTGtctaattt
tgataatattggATCACAATTATTTGTACCTAGAGCCACTTGTAGCACT Run BLAST on NCBI protein sequence of TCONS_00011161-protein >TCONS_00011161-protein ID=TCONS_00011161-protein|Name=TCONS_00011161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MPDGYIQEKTISFENDGAYKVRGVITYEHGSIYNRVTLKGEGFKKDGLIL
QKQYEFCCPNNAVYVLPDKENNGLRVVYNTIYKLKDGGHHLAAHEQQNTP
LGGGVVDIPNYHHIHAGSIFSKDLEETRDHMCLVETVRAVNLETYN Run BLAST on NCBI transcript from alignment at sc0000122:7141..9382+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011161 ID=TCONS_00011161|Name=TCONS_00011161|organism=Clytia hemisphaerica|type=transcript|length=2242bp|location=Sequence derived from alignment at sc0000122:7141..9382+ (Clytia hemisphaerica)
atcctatgaaataggatAGCACCGATTTCTTACTCAAAAAAGCCGTCTCA
GATGTGAAAAAATGAGCGATTCAGTGTACCAGCGACGTCACGCCTTCAGT
ATCACTTTTATCAGTTTCTAtatcatttttatcaaataagttgaaaatgA
AAGGAAATTCTAAAGTATGTTTTgttatataatttttatcaaatttcttt
CACATTTAGATGTTTCGCCAAATATCCAGACAGCGTTAAAGACTTCTTCA
AATCAGCAATGCCAGACGGTTACATCCAAGAAAAGACCATCAGCTTCGAA
AATGATGGCGCTTATAAAGTTCGTGGTGTAATCACTTACGAACATGGTTC
TATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAAAGACGGAc
tcattcttcaaaaacaatACGAATTTTGCTGTCCGAATAATGCAGTTTAC
GTTTTGCCGGACAAAGAAAACAACGGACTCCGTGTTGTTTATAATACAGT
AAGTTCTTCTTTTTACgagatatttgtttttatttcttttgtcgATATTG
AATTCAAACAAATAATTCTTGATAGCTAGAAACTATACCCGGTGGGACCA
TTACCCTAttggaaaatttggctaaaatttcatCCACGGTAGGAAAACCC
AACAACTTCAGTCCCACTTTCaatttgatttcatccctatttgaaattca
attgaaGAAATTGTACTCCCAAGACCGTCTTCAACTTTTATCCCCAACTG
TGGGTAAAACTTTTATCGTGACCATGAGATAGGTGTGTACgcactttaat
cgtagaaatattggcgagactaattttagcgttttagcgagttttcccta
tttttgctaaaataaatctcgctaaaacacgctgAATCGACAGATTGATA
AAATTTATCCActcgaaatttctggttatattgcagCATTATATTAAAAT
TTCTACAATTAAAGTATTCCAATGACAAACGTTTTATAAATTCATTGTTT
GTAGAGACTTTTTCTTCCATGTCCTAATGATGTTTTAGAGAATTCCAGCT
TGCGCCAGATTTTTTCACTGGTGATCCTCTCcaaatgtttatgtttattt
cTGTCTTTCCTATTATTTTGAATCTTTATCTTTGTTCACAGATCTACAAA
TTGAAAGATGGAGGACATCATTTGGCTGCACACGAACAACAGAATACTCC
ACTCGGAGGAGGAGTTGTCGATATTCCAAACTATCATCATATTCATGCTG
GAAGCATCTTCTCGAAAGATCTCGAAGAAACACGAGACCACATGTGTTTG
GTCGAAACTGTCAGAGCTGTAAATCTTGAAACATACAACtgaattatttt
attatttattatgctaatataagatttattttgtttcctacaaatctttt
ttatctaaaaaggtataatatttgtaattttcggtctttcaattttttca
catttgtctttgatttttaaagaaagaaactgaataaaagatattctttt
ttactttttacatttttaccaTGTGTTTTGGTTAATCTGAATCGCAGCAA
CTATCTatatatacttcctatataggATCCGATCTACCAATTATGAAGCA
GCCTCTACAGCATAGCTTATGTTTTTGTCTGAATTGTCAcctattgaaat
tttcaatgtCAAGAGATTTGATTCCTACATAGTGTGAACACCTGAAGAGC
TGctgaattctttctttttcacttttgaaCAAGGCCGCAATAATCTTGTT
ATTCTTAAATGCCTTATAACACAGTGTACGtttctttttaagaacaaact
atacaactATACAAGAACTTAAGGCTTCGAAGGTCaaggcttcaaactca
aaaagttaagatcaTCCAAAGGCTTCCAAAACTTTGGATATTCCTGTAAA
CGTGAATGGGTTAATATGGCCTAATTTTCCTTGAAGAACTTGTAATCATA
TTATTACGTTAATTTTATCTGAAGTTTTCTATCGTAATGATTGATGTCCG
CCTGTAATCCGATAATAGGCCAGCTAATGAAATAACTCAATCAGCGACAA
GATACAGTTAATTATAATAGAGTTGTATAATATAGATCTTAAACCAAAGA
GGCACTAGAGAAATAGAATATAAACATCAATCGAAGCTCCTAAAAGTTTG
GTTTGTTGATGATTTGTAAAAGAAAAAGGTTTCTGtctaattttgataat
attggATCACAATTATTTGTACCTAGAGCCACTTGTAGCACT Coding sequence (CDS) from alignment at sc0000122:7141..9382+ >TCONS_00011161 ID=TCONS_00011161|Name=TCONS_00011161|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000122:7141..9382+ (Clytia hemisphaerica)
ATGCCAGACGGTTACATCCAAGAAAAGACCATCAGCTTCGAAAATGATGG
CGCTTATAAAGTTCGTGGTGTAATCACTTACGAACATGGTTCTATTTACA
ATCGCGTCACACTTAAAGGAGAAGGATTCAAAAAAGACGGActcattctt
caaaaacaatACGAATTTTGCTGTCCGAATAATGCAGTTTACGTTTTGCC
GGACAAAGAAAACAACGGACTCCGTGTTGTTTATAATACAATCTACAAAT
TGAAAGATGGAGGACATCATTTGGCTGCACACGAACAACAGAATACTCCA
CTCGGAGGAGGAGTTGTCGATATTCCAAACTATCATCATATTCATGCTGG
AAGCATCTTCTCGAAAGATCTCGAAGAAACACGAGACCACATGTGTTTGG
TCGAAACTGTCAGAGCTGTAAATCTTGAAACATACAACtgaATGCCAGAC
GGTTACATCCAAGAAAAGACCATCAGCTTCGAAAATGATGGCGCTTATAA
AGTTCGTGGTGTAATCACTTACGAACATGGTTCTATTTACAATCGCGTCA
CACTTAAAGGAGAAGGATTCAAAAAAGACGGActcattcttcaaaaacaa
tACGAATTTTGCTGTCCGAATAATGCAGTTTACGTTTTGCCGGACAAAGA
AAACAACGGACTCCGTGTTGTTTATAATACAATCTACAAATTGAAAGATG
GAGGACATCATTTGGCTGCACACGAACAACAGAATACTCCACTCGGAGGA
GGAGTTGTCGATATTCCAAACTATCATCATATTCATGCTGGAAGCATCTT
CTCGAAAGATCTCGAAGAAACACGAGACCACATGTGTTTGGTCGAAACTG
TCAGAGCTGTAAATCTTGAAACATACAACtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011161-exon-sc0000122-1491911889:7141..7638 | TCONS_00011161-exon-sc0000122-1491911889:7141..7638 | Clytia hemisphaerica | exon |
| TCONS_00011161-exon-sc0000122-1510915933:7141..7638 | TCONS_00011161-exon-sc0000122-1510915933:7141..7638 | Clytia hemisphaerica | exon |
| TCONS_00011161-exon-sc0000122-1575043694:7141..7638 | TCONS_00011161-exon-sc0000122-1575043694:7141..7638 | Clytia hemisphaerica | exon |
| TCONS_00011161-exon-sc0000122-1491911889:8282..9382 | TCONS_00011161-exon-sc0000122-1491911889:8282..9382 | Clytia hemisphaerica | exon |
| TCONS_00011161-exon-sc0000122-1510915933:8282..9382 | TCONS_00011161-exon-sc0000122-1510915933:8282..9382 | Clytia hemisphaerica | exon |
| TCONS_00011161-exon-sc0000122-1575043694:8282..9382 | TCONS_00011161-exon-sc0000122-1575043694:8282..9382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:7141..9382 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006091 | generation of precursor metabolites and energy |
| GO:0008218 | bioluminescence |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008218 |
bioluminescence |
| biological_process |
GO:0006091 |
generation of precursor metabolites and energy |
Blast
The following BLAST results are available for this feature:
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