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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011255 ID=TCONS_00011255|Name=TCONS_00011255|organism=Clytia hemisphaerica|type=transcript|length=1574bp
ttctgggtggtgcactgcacaccctgcaccccctgccaggccgccactgg
tCCAGTCTCGGTAACAGTTCTAACAGTTGCAGCACGAATTTGACCATCCT
TGCTGGGTATAAGTTTCTCAATAATTCCGACTCTCCATTTGGAGCGGGCT
AACTTATCATCCATAATCAATACAATGTCATTTACTTTGGCAATAGGTCG
TCGTTTCATATATTTCTGTTGGTAGTGTTCTCTTAATTCAGTCAAATACT
CCTTGTTCCACCTGTTCCAAAAGTGTTCTAACAAAGTTTCTAGATATTGT
ACACGCTTTTCCACTTGGGCCGTTCGTTCCCCAAGTTTTTCGGCAACCAT
GTTGATTCTTCTTCCAAAGATGAGGTGATTGGGCGTTAAAGCTTCTTCCA
TTTCTGGATAGACGTAGGTTAAAGGTCGGTTGTTGATCATTACTTCAATT
TCCATTAATACTGTCAATAATTCATTAAAGCGTAAGGTAGAATTTGATAA
TACCTTTCTCAATGGGCGTTTGACTGATTGCACTAAACGCTCCCAAAAAC
CGCCCATCCAGGGGGCAGCTTCAATACTGAATTTCCAGGCTATATTTTGA
GATAATGCAAAGTTCTGTACAGTTTCACTGACAAAATTAGTCCCATTGTC
AGAACGTACTATGTCGGGTGCACCGTGTCGTGCAATCGTCGTAAAATCTC
CACACATTCATCAGCTGAAGCGTCTGCTGCAATGTCGAGGTGAACTCCTT
TGCTACTGGTACAGGTAGCAACCGAGATCCAAACTTTGTAGAATTCCTCA
TCATCTCCGAAAACGTTCTTAACATGAAGAGGTCCTGCGTAATCAAGACC
AACGTTTTTGAAGGCTGTCGTTCCGGTTACTCGATCTACCGGAAGTGAAG
GTGGTTCTGGATAAGCGTATGGTTTAGCATTTACTCATTTGCACGTATTA
CAGTCAAATAGTGCTTTTCGTAcgaaatttcttccttcaggTATCCAGAA
TTCTTGACGTAATTCGACTAAAGTGTCTCTAACACCGGCGTGTTAGATTC
TGTTGTGGATATCATAAACAATCATTTGGGCTAGCCGACCGCTAGGCAAT
AAATAAGGGTACTTTTCGTTGAACGTAAGATTTGCGTTGTCTAATCGTCC
ACGACATCGTATCAAGCCGTCATCGTCTAAGTAATTTCCCAAGTTTCTTC
CGACGTCGTTCAAATTTTTGATGGATAACTGTTCGTGTTTAATCCATAAC
TTTCTGGTATCCGTCAGTTCTTTGGCTGATAGCCACGGTCCATTCTAGTT
GTTGTTGGTAGGTAAACGtccttcttctttcttctttcggATGTTTCTTA
TGAACCTCATGACCCATGCCGTAACACGGATGAGTTTCAGAAACGAATTG
TAGCGAGTGAGAGGTATGAGCTCCCTTAAATCAATTTCAGTAGCGGGTGC
TGACAAAGCAATCACCGGCTTAACTTCTTCTTTGTATTCATCAAACTTAT
CACCAGGTAAAAGTTGTGGCCAAGAGGTTTCCGGCAAAGCCAGAAATTTT
GGTCCTCGAAACCACAAATCTCCA Run BLAST on NCBI protein sequence of TCONS_00011255-protein >TCONS_00011255-protein ID=TCONS_00011255-protein|Name=TCONS_00011255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MCGDFTTIARHGAPDIVRSDNGTNFVSETVQNFALSQNIAWKFSIEAAPW
MGGFWERLVQSVKRPLRKVLSNSTLRFNELLTVLMEIEVMINNRPLTYVY
PEMEEALTPNHLIFGRRINMVAEKLGERTAQVEKRVQYLETLLEHFWNRW
NKEYLTELREHYQQKYMKRRPIAKVNDIVLIMDDKLARSKWRVGIIEKLI
PSKDGQIRAATVRTVTETGPVAAWQGVQGVQCTTQ Run BLAST on NCBI transcript from alignment at sc0000122:431327..432900 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011255 ID=TCONS_00011255|Name=TCONS_00011255|organism=Clytia hemisphaerica|type=transcript|length=1574bp|location=Sequence derived from alignment at sc0000122:431327..432900 (Clytia hemisphaerica)
TGGAGATTTGTGGTTTCGAGGACCAAAATTTCTGGCTTTGCCGGAAACCT
CTTGGCCACAACTTTTACCTGGTGATAAGTTTGATGAATACAAAGAAGAA
GTTAAGCCGGTGATTGCTTTGTCAGCACCCGCTACTGAAATTGATTTAAG
GGAGCTCATACCTCTCACTCGCTACAATTCGTTTCTGAAACTCATCCGTG
TTACGGCATGGGTCATGAGGTTCATAAGAAACATccgaaagaagaaagaa
gaaggaCGTTTACCTACCAACAACAACTAGAATGGACCGTGGCTATCAGC
CAAAGAACTGACGGATACCAGAAAGTTATGGATTAAACACGAACAGTTAT
CCATCAAAAATTTGAACGACGTCGGAAGAAACTTGGGAAATTACTTAGAC
GATGACGGCTTGATACGATGTCGTGGACGATTAGACAACGCAAATCTTAC
GTTCAACGAAAAGTACCCTTATTTATTGCCTAGCGGTCGGCTAGCCCAAA
TGATTGTTTATGATATCCACAACAGAATCTAACACGCCGGTGTTAGAGAC
ACTTTAGTCGAATTACGTCAAGAATTCTGGATAcctgaaggaagaaattt
cgTACGAAAAGCACTATTTGACTGTAATACGTGCAAATGAGTAAATGCTA
AACCATACGCTTATCCAGAACCACCTTCACTTCCGGTAGATCGAGTAACC
GGAACGACAGCCTTCAAAAACGTTGGTCTTGATTACGCAGGACCTCTTCA
TGTTAAGAACGTTTTCGGAGATGATGAGGAATTCTACAAAGTTTGGATCT
CGGTTGCTACCTGTACCAGTAGCAAAGGAGTTCACCTCGACATTGCAGCA
GACGCTTCAGCTGATGAATGTGTGGAGATTTTACGACGATTGCACGACAC
GGTGCACCCGACATAGTACGTTCTGACAATGGGACTAATTTTGTCAGTGA
AACTGTACAGAACTTTGCATTATCTCAAAATATAGCCTGGAAATTCAGTA
TTGAAGCTGCCCCCTGGATGGGCGGTTTTTGGGAGCGTTTAGTGCAATCA
GTCAAACGCCCATTGAGAAAGGTATTATCAAATTCTACCTTACGCTTTAA
TGAATTATTGACAGTATTAATGGAAATTGAAGTAATGATCAACAACCGAC
CTTTAACCTACGTCTATCCAGAAATGGAAGAAGCTTTAACGCCCAATCAC
CTCATCTTTGGAAGAAGAATCAACATGGTTGCCGAAAAACTTGGGGAACG
AACGGCCCAAGTGGAAAAGCGTGTACAATATCTAGAAACTTTGTTAGAAC
ACTTTTGGAACAGGTGGAACAAGGAGTATTTGACTGAATTAAGAGAACAC
TACCAACAGAAATATATGAAACGACGACCTATTGCCAAAGTAAATGACAT
TGTATTGATTATGGATGATAAGTTAGCCCGCTCCAAATGGAGAGTCGGAA
TTATTGAGAAACTTATACCCAGCAAGGATGGTCAAATTCGTGCTGCAACT
GTTAGAACTGTTACCGAGACTGGaccagtggcggcctggcagggggtgca
gggtgtgcagtgcaccacccagaa Coding sequence (CDS) from alignment at sc0000122:431327..432900 >TCONS_00011255 ID=TCONS_00011255|Name=TCONS_00011255|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000122:431327..432900 (Clytia hemisphaerica)
ATGTGTGGAGATTTTACGACGATTGCACGACACGGTGCACCCGACATAGT
ACGTTCTGACAATGGGACTAATTTTGTCAGTGAAACTGTACAGAACTTTG
CATTATCTCAAAATATAGCCTGGAAATTCAGTATTGAAGCTGCCCCCTGG
ATGGGCGGTTTTTGGGAGCGTTTAGTGCAATCAGTCAAACGCCCATTGAG
AAAGGTATTATCAAATTCTACCTTACGCTTTAATGAATTATTGACAGTAT
TAATGGAAATTGAAGTAATGATCAACAACCGACCTTTAACCTACGTCTAT
CCAGAAATGGAAGAAGCTTTAACGCCCAATCACCTCATCTTTGGAAGAAG
AATCAACATGGTTGCCGAAAAACTTGGGGAACGAACGGCCCAAGTGGAAA
AGCGTGTACAATATCTAGAAACTTTGTTAGAACACTTTTGGAACAGGTGG
AACAAGGAGTATTTGACTGAATTAAGAGAACACTACCAACAGAAATATAT
GAAACGACGACCTATTGCCAAAGTAAATGACATTGTATTGATTATGGATG
ATAAGTTAGCCCGCTCCAAATGGAGAGTCGGAATTATTGAGAAACTTATA
CCCAGCAAGGATGGTCAAATTCGTGCTGCAACTGTTAGAACTGTTACCGA
GACTGGaccagtggcggcctggcagggggtgcagggtgtgcagtgcacca
cccag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011255-exon-sc0000122-1491911889:431327..432900 | TCONS_00011255-exon-sc0000122-1491911889:431327..432900 | Clytia hemisphaerica | exon |
| TCONS_00011255-exon-sc0000122-1510915933:431327..432900 | TCONS_00011255-exon-sc0000122-1510915933:431327..432900 | Clytia hemisphaerica | exon |
| TCONS_00011255-exon-sc0000122-1575043694:431327..432900 | TCONS_00011255-exon-sc0000122-1575043694:431327..432900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:431327..432900 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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