TCONS_00011337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011337
Unique NameTCONS_00011337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011337 ID=TCONS_00011337|Name=TCONS_00011337|organism=Clytia hemisphaerica|type=transcript|length=3361bp
aaaatatatttttggtgAAGGATAAGAGAAACTATACAacaattttcaga
cattatcattGAGGGTATAAACAGAGAAAGGTCAACGATTTTGAGTTGCT
GGAGTGAGAAAAATGTGGACGCGAGACCTAGCCATTGCAATTGGTTTAGT
TTGTCTTGTACAAAGTGTAACATGTTCAATGCAAGatgtcaaaaagtgtc
cgAACCATGAAGTTTTCACCGGCAGCCGAAAGTTAGATGGGATCTGTCAT
GGCATACAAATTGACGACCAAATCTCATTCCCTAACTATTTGGGGCATAG
AAACTTAAACGAAGCTATCAAATCAATCAGTTTATACAAAGTCTTCATAA
AGCTTGGCTGTTCAAATCAATTTGAAAGATTCGTATGCGCGTTACATTTT
CCGAAATGTAATAACAAGAAACCACCGTGTCGGCAGATTTGCGAATTATC
GCGTGATAGTTGTGCACCCAAACTAATGGAGTTCGGAATGAAATGGCCCG
TCTTTTTGGGTTGTGGACGGTTCCCAGATAGTGAATATGCTGATGTCTGT
ATTGGAGGAACAAAGAAAGCCACGGTAGCACCAGCTCCCGAAAGATCAAG
TATTCCTACGACGACAACACCTAAATCATTTCCTACCACGGTAAAACAAG
AGCCGGTACGACAGTCGAACATGAAAACAACAGCATCACAAAcagcagaa
aaatcaaaatgtatGTCTATCGCTGAcaataaaataataatgaaaGGATT
TTGTAGAAATCGACCCTACAACTACACAATTATGAAGACCAAATCTGAGA
TAGAGGAAGCAAATCTGGTAGGAAACCAATTCGAACCACTGTTCAAGGTC
GAATGTTCCGAGCATATTCaagatttcatttgttcctaTTATTTGCCAAA
GTGTGAAGCAAATAAACCCTTACCTCCGTGCCGAAGCCTTTGTAAGGAAG
CTAGAAAGGGTTGTAAAGAGTTAATGAACAAATTTGGATTCCAATGGCCA
CGCCACCTCCGATGTAGGCACTTTCCTAAGAGAAATCAAGAAGGAAACAA
TTGCTTTATGGTTAAGAAAAAAGTACCTCCAAAGCCTACCTTAACACCAA
AGCTACCAGTTAAAGGTGAATGTATAGCATTTGAGAAGCAGCCTGTACCT
TTTAAGGGGAAATACTGTAAAGTTCTACCATATGACAGGACATTAAAGAT
GAAAAAGACTACACTTAATTCCGTTGGAAGTAAAGTGGTACGGTACATCC
CTTTCTTTCAAAGATGTTCAAAACATCTTGAGTTATTTGTGTGTTCGGTG
CATTACCCGAAATGTGAATCCGGACTTGTTTTACCTCCATGCCGAAAGGT
TTGTGAGGCTGCCAGAAACGGTTGCAAAGATACAGTAGCGAGATTTGGAT
TCAGCTGGCCGGAGAAACTCAATTGTCATCATTATCCtgtacaaaatgaa
aataaagataacTGTTTCATGACTGATGGGGAAGAAATACAAAAGATTCG
CCCCTCGAtaataaaaccaaacaaaacaTGCAACTTAGTTAGAGAAGTTT
TGAGAAATAAAAGGATTTGCCAGCAGCTCCCGTACAGCTATACGTCAATC
GATAAGTTAAAGGCGATAAGTGGTGCAAAGAGGATGATTGAAATGTTCAA
CCCATTATATGCAGTCAGATGCTCTGATCATTTACAAAACTTTATTTGTT
CTTATCATTTCCCAAAATGTGAACTGAACAAAGTTTTGCCACCTTGTCGA
GAGCTTTGTGAAGCTTCTAGAAATGGTTGTAGTCTGTTGATGCAAAAGTA
TGGTTTTCAGTGGCCAGATCAATTGAAGTGTGATCGATTCCCGAAAAAAG
TTATCAATGAAAATAACTGCTTTTCCGGTGAAGAACCaagaacaaacaaa
caaaaagcaaCTCAAAAGACAACAAAAAGGACTCAGATGACAACAAAATT
ACCGAATTCTTCAGCCTCCCAAAAACCAAAGACATCAGAAATGGCATCCA
AACCAAATCAATGTCAAGAACTCATAAGGACTCATGAATCAtcaaatttt
tgcaataaaCTGCCCTACAAATATACTTCCATTGGAAAGTCACCTTATTA
CGCCAAAAGTTTTCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAACAG
GCTGCTCAGATcaaatgcaaaatttcatttgttCATATTATTTCCCAAAA
TGTGAACTGAACAAAGTTTTGCCACCTTGTCGAGAGCTTTGCGAGACTTC
TAGAAATGGTTGCAGTCTTTTGATGCAAAAGTATGGTTTTCAGCTGCCAG
AAGAATTGAAGTGTGATCGATTCCCGAAAAAAGATATCAATGAAAATAAC
TGCTTTGCTGGTGGAGAACCAAGGACAACAAAAGCAACTCAAATGACAAC
AAAAATGACTCGAATAACAACAAACTTACCGATTTTTTCAACTTCCCTAA
AACCAAAGACATCGGAAATGGCAACCAAACCAAATCAATGTCAAGAACTC
ATAAGGAAATCATCAAATGTTTGCAATAAACTACCCTACAAATATACTTC
CATTGAAAAGTCATCAATCAGCTATGTCAAAAATTCAATTCTTGAAGTTC
AACTTTATGAACCTCTGTTCAAAGCAGGCTGCTCAGATcaaatgcaaaat
ttcatttgttCATATTATTTCCCAAAATGTGAACTGAACAAAGTTTTGCC
ACCTTGTCGAGAGTATTGTAAGGACGCTACAAATGGTTGCAGTCAGCTGA
TGGAAGAGTTTGGTTTTCAATTGCCAAAATACTTGAAATGCGATCGTTTT
CCAAAACGAAACATCAACGGAGATAACTGTTTTTCGGGAAAGATTTAATA
CAGAAAATCATGCAGAAAACTTTTCTCAAAGATTGCATCGACTACTTTCG
GAGAAAACTGTTCAGGCAGAATGTAATAATAAACCTTCATGAAAACGTTG
AGAAAATTTATGTGGATAATCATACCTTAAAAACATTGCCTTAAAGGATT
GAtatctaaaaaacaaaaaaaacgagAGATACTTACAAACCGATCGACGC
TGTATGAATAGAAACAAAATTAGAATACTAATTAAATAATATGAGAGCTT
TATCATGGGGGGTTATCAGCTTTCTCACAAGGCAACATTTcttaattttg
ttaaattacACTAACCAATTGTTCATTTGTTCATctgtatttgaaaaaaa
agagaagaattAAAGTGGATTACCTTGTTCCTAATTCTTTTTTCCCTTAT
TCTTCTTGGTCGATTCTGAGCTACACCCATCTATGTGTCAATCATCAAAA
AATAGACAGATTCTTGATCAGGATAACATAATTATTATATCTCtatcttt
atttgattttt
Run BLAST on NCBI

protein sequence of TCONS_00011337-protein

>TCONS_00011337-protein ID=TCONS_00011337-protein|Name=TCONS_00011337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=911bp
MWTRDLAIAIGLVCLVQSVTCSMQDVKKCPNHEVFTGSRKLDGICHGIQI
DDQISFPNYLGHRNLNEAIKSISLYKVFIKLGCSNQFERFVCALHFPKCN
NKKPPCRQICELSRDSCAPKLMEFGMKWPVFLGCGRFPDSEYADVCIGGT
KKATVAPAPERSSIPTTTTPKSFPTTVKQEPVRQSNMKTTASQTAEKSKC
MSIADNKIIMKGFCRNRPYNYTIMKTKSEIEEANLVGNQFEPLFKVECSE
HIQDFICSYYLPKCEANKPLPPCRSLCKEARKGCKELMNKFGFQWPRHLR
CRHFPKRNQEGNNCFMVKKKVPPKPTLTPKLPVKGECIAFEKQPVPFKGK
YCKVLPYDRTLKMKKTTLNSVGSKVVRYIPFFQRCSKHLELFVCSVHYPK
CESGLVLPPCRKVCEAARNGCKDTVARFGFSWPEKLNCHHYPVQNENKDN
CFMTDGEEIQKIRPSIIKPNKTCNLVREVLRNKRICQQLPYSYTSIDKLK
AISGAKRMIEMFNPLYAVRCSDHLQNFICSYHFPKCELNKVLPPCRELCE
ASRNGCSLLMQKYGFQWPDQLKCDRFPKKVINENNCFSGEEPRTNKQKAT
QKTTKRTQMTTKLPNSSASQKPKTSEMASKPNQCQELIRTHESSNFCNKL
PYKYTSIGKSPYYAKSFLEVQLYEPLFKTGCSDQMQNFICSYYFPKCELN
KVLPPCRELCETSRNGCSLLMQKYGFQLPEELKCDRFPKKDINENNCFAG
GEPRTTKATQMTTKMTRITTNLPIFSTSLKPKTSEMATKPNQCQELIRKS
SNVCNKLPYKYTSIEKSSISYVKNSILEVQLYEPLFKAGCSDQMQNFICS
YYFPKCELNKVLPPCREYCKDATNGCSQLMEEFGFQLPKYLKCDRFPKRN
INGDNCFSGKI
Run BLAST on NCBI

transcript from alignment at sc0000127:16822..22654+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011337 ID=TCONS_00011337|Name=TCONS_00011337|organism=Clytia hemisphaerica|type=transcript|length=5833bp|location=Sequence derived from alignment at sc0000127:16822..22654+ (Clytia hemisphaerica)
aaaatatatttttggtgAAGGATAAGAGAAACTATACAacaattttcaga
cattatcattGAGGGTATAAACAGAGAAAGGTCAACGATTTTGAGTTGCT
GGAGTGAGAAAAATGTGGACGCGAGACCTAGCCATTGCAATTGGTTTAGT
TTGTCTTGTACAAAGTGTAACATGTTCAATGCAAGGTCAGTTTATTCCCT
TCTTTAGAGCCTTGTATTTTTAACATGCATTTGTGATTGACAAAAGTTGG
AATTGATAGCTGCAAGAACAAACCTGAAGTTAACGTACGGCTGGTTTAGA
CGAGGAAAATGTGTAAAAACCTTCAAACTTTGAGTTCCTTAAGCCCTGAA
ATCaaacttcttttgtttttagatgtcaaaaagtgtccgAACCATGAAGT
TTTCACCGGCAGCCGAAAGTTAGATGGGATCTGTCATGGCATACAAATTG
ACGACCAAATCTCATTCCCTAACTATTTGGGGCATAGAAACTTAAACGAA
GCTATCAAATCAATCAGTTTATACAAAGTCTTCATAAAGCTTGGCTGTTC
AAATCAATTTGAAAGATTCGTATGCGCGTTACATTTTCCGAAATGTAATA
ACAAGAAACCACCGTGTCGGCAGATTTGCGAATTATCGCGTGATAGTTGT
GCACCCAAACTAATGGAGTTCGGAATGAAATGGCCCGTCTTTTTGGGTTG
TGGACGGTTCCCAGATAGTGAATATGCTGATGTCTGTATTGGAGGAACAA
AGAAAGGTAAAAAGCATTAGGTTTAaagttgtctgtacacagacccagta
tctacgactaatttcaaaattcattgccgtacatagggtctgttgtcatt
gtcttttatcatttgagatttttcaaaccgaccgctgcgatggagtgcgg
GTGAGAGAAGGGAGGCGGCAAGAGAAGTTtatctatttataaatcatact
tcatcgcagaagtctccgtacgggaatttttttatcaaacagacaatgca
cacagagtgtactacgaagcgataaacgtgagatactaTTATTTACacgg
tcttctcgaggtgggatacgggatatacaaggtcagtaaaaaccgtattg
gtggcgaggcttgcCGAGTTTATAGCATCGCAATTGAAAGTCTTGCTCAA
TCCATATCAaccaaagaaaagtaaaaatcaaaataactttctCAAAATAG
ATTTTCTGCATCCTATTGACACAAACATTCTCAATCACTGTTTTcctctt
gttttattttttctgtcgtttcaaaacaaaacattcgaattttgaccaaa
acattcgaaagcgcattcgccaatatgcaatgtcttaattttttctcaat
cgaatgCGAGGAAGACAGATACGGTTtatatcccacctccacgtgatgtc
tttcgaccaatggaatcgcgagaatcttactgatgcgggatAAAATCTGG
TACAGAGTGGGTTTAAAGCCGAAGGCTAAAGAGGAATCTTCAaaccaagc
aagaaaaagtgaagcattaacatttgcgccgcatttagaataacggattg
aatctagcacttttcttttgttttcaggaggcaaatttttcgaaatctgg
cgatggattttactttatctctgtcgtttgtgtgaaaaccacacCACTTG
GATCGCGGGCTTTGGATGGAAAATAACTGCCATCTAAGAGTTACCTCTCT
TTAAACTCAATAGTGTTAGATGAAACTATGGAAATTGCAGTCATATTCCC
TCTGTTTGTATCTAACCAGTCTAAACAATTTCATTTCCTGGGTTTGACGG
GTGTCACTTTATTAAGGTATTTATTtccccttgagagtggtttctacata
aaaagtaaaacaaagtCCATTCTCTTTTAGTCTTAGTCTTAAACAATCTC
AAGCGAAATAAATACTTTAATAAAGTACAGTGCACACTCAGCGAATAGAC
TCGTAAAGTTAATTGATTTTTACCTTGTAAGGACAATATATATTGCATTA
AGCACATGCACCATAACCATATCTATTCAAACATCAACACTAAATACTCT
AGGGAAAAGAATTAGACTATAGATTGTGGTCAAGCTAAGCCagttaaaat
aatttaattctCAAACGTAATTCTCACTTCTTTCTAGCCACGGTAGCACC
AGCTCCCGAAAGATCAAGTATTCCTACGACGACAACACCTAAATCATTTC
CTACCACGGTAAAACAAGAGCCGGTACGACAGTCGAACATGAAAACAACA
GCATCACAAAcagcagaaaaatcaaaatgtatGTCTATCGCTGAcaataa
aataataatgaaaGGATTTTGTAGAAATCGACCCTACAACTACACAATTA
TGAAGACCAAATCTGAGATAGAGGAAGCAAATCTGGTAGGAAACCAATTC
GAACCACTGTTCAAGGTCGAATGTTCCGAGCATATTCaagatttcatttg
ttcctaTTATTTGCCAAAGTGTGAAGCAAATAAACCCTTACCTCCGTGCC
GAAGCCTTTGTAAGGAAGCTAGAAAGGGTTGTAAAGAGTTAATGAACAAA
TTTGGATTCCAATGGCCACGCCACCTCCGATGTAGGCACTTTCCTAAGAG
AAATCAAGAAGGAAACAATTGCTTTATGGTTAAGAAAAAAGTACCTCCAA
AGCCTACCTTAACACCAAAGCTACCAGTTAAAGGTGAATGTATAGCATTT
GAGAAGCAGCCTGTACCTTTTAAGGGGAAATACTGTAAAGTTCTACCATA
TGACAGGACATTAAAGATGAAAAAGACTACACTTAATTCCGTTGGAAGTA
AAGTGGTACGGTACATCCCTTTCTTTCAAAGATGTTCAAAACATCTTGAG
TTATTTGTGTGTTCGGTGCATTACCCGAAATGTGAATCCGGACTTGTTTT
ACCTCCATGCCGAAAGGTTTGTGAGGCTGCCAGAAACGGTTGCAAAGATA
CAGTAGCGAGATTTGGATTCAGCTGGCCGGAGAAACTCAATTGTCATCAT
TATCCtgtacaaaatgaaaataaagataacTGTTTCATGACTGATGGGGA
AGAAATACAAAAGATTCGCCCCTCGAtaataaaaccaaacaaaacaTGCA
ACTTAGTTAGAGAAGTTTTGAGAAATAAAAGGATTTGCCAGCAGCTCCCG
TACAGCTATACGTCAATCGATAAGTTAAAGGCGATAAGTGGTGCAAAGAG
GATGATTGAAATGTTCAACCCATTATATGCAGTCAGATGCTCTGATCATT
TACAAAACTTTATTTGTTCTTATCATTTCCCAAAATGTGAACTGAACAAA
GTTTTGCCACCTTGTCGAGAGCTTTGTGAAGCTTCTAGAAATGGTTGTAG
TCTGTTGATGCAAAAGTATGGTTTTCAGTGGCCAGATCAATTGAAGTGTG
ATCGATTCCCGAAAAAAGTTATCAATGAAAATAACTGCTTTTCCGGTAAG
TTTGAGTTTTAAAGGAATGCAAATAAAAAGGGTTTTATATAAGAGCACTA
CAAAGAAGACCgtacatttctttttctttttttcattcataAGTTTTCTT
CTCGAATCTTAGGTAAGTTATAAGATTTAATCTAcaataaagttaaaaat
ataATCTTTAAAGCGCTTCCACACTATACAAAACTTGTAACGCAAAGGGT
TAACCCAGATAAATATTTCGGACGGTTTTAGACGTCATGAGGTCGTAAAA
AAGTTATTCTTCTTAGCAACGGTGatttcttagaatttttttttcaattt
ttttcattgcaaaATTCAGGTGAAGAACCaagaacaaacaaacaaaaagc
aaCTCAAAAGACAACAAAAAGGACTCAGATGACAACAAAATTACCGAATT
CTTCAGCCTCCCAAAAACCAAAGACATCAGAAATGGCATCCAAACCAAAT
CAATGTCAAGAACTCATAAGGACTCATGAATCAtcaaatttttgcaataa
aCTGCCCTACAAATATACTTCCATTGGAAAGTCACCTTATTACGCCAAAA
GTTTTCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAACAGGCTGCTCA
GATcaaatgcaaaatttcatttgttCATATTATTTCCCAAAATGTGAACT
GAACAAAGTTTTGCCACCTTGTCGAGAGCTTTGCGAGACTTCTAGAAATG
GTTGCAGTCTTTTGATGCAAAAGTATGGTTTTCAGCTGCCAGAAGAATTG
AAGTGTGATCGATTCCCGAAAAAAGATATCAATGAAAATAACTGCTTTGC
TGgtaaattcataaattttgaaaagtaaattttgtGAATTCTCAATGTAC
AAAATTACAGCCTAAAGTCTGTTCCTTAAAAAATTGGCAGTTTGCACATT
TTGATACATTCCTCTCTAAGAAGAAAAGATACaatcaaaatgttgaaaag
atAGTCAAGCGGAGgattttaagactttcaaactttttcggaaataaaga
tgaaaaaaaatcaagatcttTTCTACAGAacgaaagtttttgaatttata
CTTTTCTGAAAACTTGGAACTTCGCTGATTTCAATATGTTTTCAGGTTTT
TCATATCTTTCTTGGAGCGAAAGTTGCACCTCTCCAAAGTAGGTTagggt
aaaattagcaaaatggAAATTAAGAAGATTAAGATTAAAATCTTTTCAAC
ATGGTATTACTTTTAATTATGTCCTTCTATCCTTCAAGGGCAATTTATCA
AAATGTGGGACTGctatttttttttggaacagacttaAACTTAAAATCAA
AATCGTCGTAGTAGCAGGCGAACACCTTTCAAAAAACTCAATATAAcaca
ttttatttcttttattttcattcatgaTTTAGGTGGAGAACCAAGGACAA
CAAAAGCAACTCAAATGACAACAAAAATGACTCGAATAACAACAAACTTA
CCGATTTTTTCAACTTCCCTAAAACCAAAGACATCGGAAATGGCAACCAA
ACCAAATCAATGTCAAGAACTCATAAGGAAATCATCAAATGTTTGCAATA
AACTACCCTACAAATATACTTCCATTGAAAAGTCATCAATCAGCTATGTC
AAAAATTCAATTCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAGCAGG
CTGCTCAGATcaaatgcaaaatttcatttgttCATATTATTTCCCAAAAT
GTGAACTGAACAAAGTTTTGCCACCTTGTCGAGAGTATTGTAAGGACGCT
ACAAATGGTTGCAGTCAGCTGATGGAAGAGTTTGGTTTTCAATTGCCAAA
ATACTTGAAATGCGATCGTTTTCCAAAACGAAACATCAACGGAGATAACT
GTTTTTCGGGAAAGATTTAATACAGAAAATCATGCAGAAAACTTTTCTCA
AAGATTGCATCGACTACTTTCGGAGAAAACTGTTCAGGCAGAATGTAATA
ATAAACCTTCATGAAAACGTTGAGAAAATTTATGTGGATAATCATACCTT
AAAAACATTGCCTTAAAGGATTGAtatctaaaaaacaaaaaaaacgagAG
ATACTTACAAACCGATCGACGCTGTATGAATAGAAACAAAATTAGAATAC
TAATTAAATAATATGAGAGCTTTATCATGGGGGGTTATCAGCTTTCTCAC
AAGGCAACATTTcttaattttgttaaattacACTAACCAATTGTTCATTT
GTTCATctgtatttgaaaaaaaagagaagaattAAAGTGGATTACCTTGT
TCCTAATTCTTTTTTCCCTTATTCTTCTTGGTCGATTCTGAGCTACACCC
ATCTATGTGTCAATCATCAAAAAATAGACAGATTCTTGATCAGGATAACA
TAATTATTATATCTCtatctttatttgattttt

Coding sequence (CDS) from alignment at sc0000127:16822..22654+

>TCONS_00011337 ID=TCONS_00011337|Name=TCONS_00011337|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000127:16822..22654+ (Clytia hemisphaerica)
ATGTGGACGCGAGACCTAGCCATTGCAATTGGTTTAGTTTGTCTTGTACA
AAGTGTAACATGTTCAATGCAAGatgtcaaaaagtgtccgAACCATGAAG
TTTTCACCGGCAGCCGAAAGTTAGATGGGATCTGTCATGGCATACAAATT
GACGACCAAATCTCATTCCCTAACTATTTGGGGCATAGAAACTTAAACGA
AGCTATCAAATCAATCAGTTTATACAAAGTCTTCATAAAGCTTGGCTGTT
CAAATCAATTTGAAAGATTCGTATGCGCGTTACATTTTCCGAAATGTAAT
AACAAGAAACCACCGTGTCGGCAGATTTGCGAATTATCGCGTGATAGTTG
TGCACCCAAACTAATGGAGTTCGGAATGAAATGGCCCGTCTTTTTGGGTT
GTGGACGGTTCCCAGATAGTGAATATGCTGATGTCTGTATTGGAGGAACA
AAGAAAGCCACGGTAGCACCAGCTCCCGAAAGATCAAGTATTCCTACGAC
GACAACACCTAAATCATTTCCTACCACGGTAAAACAAGAGCCGGTACGAC
AGTCGAACATGAAAACAACAGCATCACAAAcagcagaaaaatcaaaatgt
atGTCTATCGCTGAcaataaaataataatgaaaGGATTTTGTAGAAATCG
ACCCTACAACTACACAATTATGAAGACCAAATCTGAGATAGAGGAAGCAA
ATCTGGTAGGAAACCAATTCGAACCACTGTTCAAGGTCGAATGTTCCGAG
CATATTCaagatttcatttgttcctaTTATTTGCCAAAGTGTGAAGCAAA
TAAACCCTTACCTCCGTGCCGAAGCCTTTGTAAGGAAGCTAGAAAGGGTT
GTAAAGAGTTAATGAACAAATTTGGATTCCAATGGCCACGCCACCTCCGA
TGTAGGCACTTTCCTAAGAGAAATCAAGAAGGAAACAATTGCTTTATGGT
TAAGAAAAAAGTACCTCCAAAGCCTACCTTAACACCAAAGCTACCAGTTA
AAGGTGAATGTATAGCATTTGAGAAGCAGCCTGTACCTTTTAAGGGGAAA
TACTGTAAAGTTCTACCATATGACAGGACATTAAAGATGAAAAAGACTAC
ACTTAATTCCGTTGGAAGTAAAGTGGTACGGTACATCCCTTTCTTTCAAA
GATGTTCAAAACATCTTGAGTTATTTGTGTGTTCGGTGCATTACCCGAAA
TGTGAATCCGGACTTGTTTTACCTCCATGCCGAAAGGTTTGTGAGGCTGC
CAGAAACGGTTGCAAAGATACAGTAGCGAGATTTGGATTCAGCTGGCCGG
AGAAACTCAATTGTCATCATTATCCtgtacaaaatgaaaataaagataac
TGTTTCATGACTGATGGGGAAGAAATACAAAAGATTCGCCCCTCGAtaat
aaaaccaaacaaaacaTGCAACTTAGTTAGAGAAGTTTTGAGAAATAAAA
GGATTTGCCAGCAGCTCCCGTACAGCTATACGTCAATCGATAAGTTAAAG
GCGATAAGTGGTGCAAAGAGGATGATTGAAATGTTCAACCCATTATATGC
AGTCAGATGCTCTGATCATTTACAAAACTTTATTTGTTCTTATCATTTCC
CAAAATGTGAACTGAACAAAGTTTTGCCACCTTGTCGAGAGCTTTGTGAA
GCTTCTAGAAATGGTTGTAGTCTGTTGATGCAAAAGTATGGTTTTCAGTG
GCCAGATCAATTGAAGTGTGATCGATTCCCGAAAAAAGTTATCAATGAAA
ATAACTGCTTTTCCGGTGAAGAACCaagaacaaacaaacaaaaagcaaCT
CAAAAGACAACAAAAAGGACTCAGATGACAACAAAATTACCGAATTCTTC
AGCCTCCCAAAAACCAAAGACATCAGAAATGGCATCCAAACCAAATCAAT
GTCAAGAACTCATAAGGACTCATGAATCAtcaaatttttgcaataaaCTG
CCCTACAAATATACTTCCATTGGAAAGTCACCTTATTACGCCAAAAGTTT
TCTTGAAGTTCAACTTTATGAACCTCTGTTCAAAACAGGCTGCTCAGATc
aaatgcaaaatttcatttgttCATATTATTTCCCAAAATGTGAACTGAAC
AAAGTTTTGCCACCTTGTCGAGAGCTTTGCGAGACTTCTAGAAATGGTTG
CAGTCTTTTGATGCAAAAGTATGGTTTTCAGCTGCCAGAAGAATTGAAGT
GTGATCGATTCCCGAAAAAAGATATCAATGAAAATAACTGCTTTGCTGGT
GGAGAACCAAGGACAACAAAAGCAACTCAAATGACAACAAAAATGACTCG
AATAACAACAAACTTACCGATTTTTTCAACTTCCCTAAAACCAAAGACAT
CGGAAATGGCAACCAAACCAAATCAATGTCAAGAACTCATAAGGAAATCA
TCAAATGTTTGCAATAAACTACCCTACAAATATACTTCCATTGAAAAGTC
ATCAATCAGCTATGTCAAAAATTCAATTCTTGAAGTTCAACTTTATGAAC
CTCTGTTCAAAGCAGGCTGCTCAGATcaaatgcaaaatttcatttgttCA
TATTATTTCCCAAAATGTGAACTGAACAAAGTTTTGCCACCTTGTCGAGA
GTATTGTAAGGACGCTACAAATGGTTGCAGTCAGCTGATGGAAGAGTTTG
GTTTTCAATTGCCAAAATACTTGAAATGCGATCGTTTTCCAAAACGAAAC
ATCAACGGAGATAACTGTTTTTCGGGAAAGATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006357XLOC_006357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011337-exon-sc0000127-1491911889:16822..17006TCONS_00011337-exon-sc0000127-1491911889:16822..17006Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1510915933:16822..17006TCONS_00011337-exon-sc0000127-1510915933:16822..17006Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1575043694:16822..17006TCONS_00011337-exon-sc0000127-1575043694:16822..17006Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1491911889:17194..17577TCONS_00011337-exon-sc0000127-1491911889:17194..17577Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1510915933:17194..17577TCONS_00011337-exon-sc0000127-1510915933:17194..17577Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1575043694:17194..17577TCONS_00011337-exon-sc0000127-1575043694:17194..17577Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1491911889:18959..20266TCONS_00011337-exon-sc0000127-1491911889:18959..20266Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1510915933:18959..20266TCONS_00011337-exon-sc0000127-1510915933:18959..20266Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1575043694:18959..20266TCONS_00011337-exon-sc0000127-1575043694:18959..20266Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1491911889:20591..21073TCONS_00011337-exon-sc0000127-1491911889:20591..21073Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1510915933:20591..21073TCONS_00011337-exon-sc0000127-1510915933:20591..21073Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1575043694:20591..21073TCONS_00011337-exon-sc0000127-1575043694:20591..21073Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1491911889:21654..22654TCONS_00011337-exon-sc0000127-1491911889:21654..22654Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1510915933:21654..22654TCONS_00011337-exon-sc0000127-1510915933:21654..22654Clytia hemisphaericaexon
TCONS_00011337-exon-sc0000127-1575043694:21654..22654TCONS_00011337-exon-sc0000127-1575043694:21654..22654Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011337-proteinTCONS_00011337-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:16822..22654 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103416	0.0597672	0.104106	0.121552	8.64103	7.26922	13.3294	15.3884	8.11563	10.4726	18.6384	15.476	6.87819	8.08247	0.79064	1.12115	8.0444	5.74136	14.5073	21.5086	4.16418	3.34474	1.03183	0.71103	2.93784	2.54408	0.467824	0.318643	3.23388	3.41404
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020067Frizzled_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00011337 vs. Swiss-Prot (Human)
Match: FZD2 (Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.796e-23
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 2 
Query:  707 KCMSIADNKI---IMKGFCRNRPYNYTIMKT---KSEIEEANLVGNQFEPLFKVECSEHIQDFICSYYLPKCEA-NKPLPPCRSLCKEARKGCKELMNKFGFQWPRHLRCRHFPKRNQE 1042
            K +SI D+     I    C +  YN TIM      +  E+A L  +QF PL KV+CS  ++ F+CS Y P C    + +PPCRS+C+ AR+GC+ LMNKFGFQWP  LRC HFP+   E
Sbjct:   29 KGISIPDHGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFPRHGAE 147

HSP 2 Score: 82.8037 bits (203), Expect = 4.705e-16
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 2 
Query: 1565 ICQQLPYSYTSIDKLKAISG---AKRMIEMFNPLYAVRCSDHLQNFICSYHFPKCE-LNKVLPPCRELCEASRNGCSLLMQKYGFQWPDQLKCDRFPK 1846
            +C  + Y+ T +  L   +    A   +  F PL  V+CS  L+ F+CS + P C  L + +PPCR +CE +R GC  LM K+GFQWP++L+C+ FP+
Sbjct:   46 LCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFPR 143

HSP 3 Score: 82.4185 bits (202), Expect = 5.312e-16
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 2 
Query: 2114 LEVQLYEPLFKTGCSDQMQNFICSYYFPKCE-LNKVLPPCRELCETSRNGCSLLMQKYGFQLPEELKCDRFPKKDINE 2344
            LEV  + PL K  CS +++ F+CS Y P C  L + +PPCR +CE +R GC  LM K+GFQ PE L+C+ FP+    +
Sbjct:   71 LEVHQFYPLVKVQCSPELRFFLCSMYAPVCTVLEQAIPPCRSICERARQGCEALMNKFGFQWPERLRCEHFPRHGAEQ 148
The following BLAST results are available for this feature:
BLAST of TCONS_00011337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FZD21.796e-2346.22Frizzled-2 OS=Homo sapiens GN=FZD2 PE=1 SV=1[more]
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