TCONS_00011475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011475
Unique NameTCONS_00011475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011475 ID=TCONS_00011475|Name=TCONS_00011475|organism=Clytia hemisphaerica|type=transcript|length=523bp
ATAAATAGAAACGAAAGTCAATTCATGATAGATTTGGCACGAGTCAGAAG
CCGAAGCCAAGAATCATGCATTTCAACCATCACATTTATGCACTGAAAAT
CTTTCACTAATGCACATCCCACTGATTTCCACATTCGATACAAAACAATA
TCGGTTTCCAATcgaaaattgaataaaagaagaccCTGGAAGAAGAATCT
CTGCAACAGCACCAGACAGTTGTAAGGCATCATAATTACCACATCGTTTG
CCTGCTCTCGCTACAGACAGACGTACTTTGAAGGCATTTTAGAAAAATGT
GGACTCCTAGGTAAAAAGGCGGAGTTTCATTTTATGTAAATattgtatca
ttttttaaagaatttcgaAACTTGTAACAAgatataacttttcaaattag
GAAAGATGAATCTAGATTCCAAGAATGATTCTGCGCATAAGACTAAACTT
CACATTTGTTTTATGATCGGGCTCTTCGAGAAAATGTTCTTCAGCCAACA
GTGGAGGATACATTGTCAAAGGG
Run BLAST on NCBI

transcript from alignment at sc0000128:189859..191889-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011475 ID=TCONS_00011475|Name=TCONS_00011475|organism=Clytia hemisphaerica|type=transcript|length=2031bp|location=Sequence derived from alignment at sc0000128:189859..191889- (Clytia hemisphaerica)
ATAAATAGAAACGAAAGTCAATTCATGATAGATTTGGCACGAGTCAGAAG
CCGAAGCCAAGAATCATGCATTTCAACCATCACATTTATGCACTGAAAAT
CTTTCACTAATGCACATCCCACTGATTTCCACATTCGATACAAAACAATA
TCGGTTTCCGTAAGACGCAATTTCATTCATACATTTATACACACGTTTTG
GTATAATCATGTTTACAAGGACAAAACCTTATTAAGAAAAGTTAGTGTTA
AGTCAAGGGAGTTTAGGGTACACGTTTGTATATCTACATTGTTTTGCCTA
TGTGAGAGTTTGACAGTTTATTCTCACAAGGGGCCGTCTACATAGTACTA
ACGCACTAAAATGTCGAAAATCGAGTACCCCTTCCCCCTGTACGAAAGCG
TACGCAAATGGCTATACCCCCTGGTAAGTACGTACTTTTTCATTCACCCC
CCTCCTCGGTTGAAGAAAATTTCGCTTGGTTCGGNTAATAAAATCGACTC
TCTCACAGGGTCATAAACTCTCCTAGTTTAGACCAAAGTTTGAAAATTTG
GCTGAAAATTGCGGAAAATAGTCTCTCTGAATTTTTGAAATTCAGTCTCT
GACAGGGTCGATTTTTCGAACTTTGGCTTGGACTTACCCGTCACCTAGTA
AACCTATTACCTCCTTGGTTAGACTACACCCATGCATTGCCCCTGTGATC
ATTTTCTTTTAGCAGGGAAAATATTTTCCCTATTCATTTCTAATGGGATT
AAAGTAGTTTTGAAATTCCTAATGAGAATGAGGTTTAAAAAGTACGTTCC
CACTATAAGATTTTATTTGTAGATAAATAGAAACGAAAGTCAATTCATGA
TAGATTTGGCACGAGTCAGAAGCCGAAGCCAAGAATCATGCATTTCAACC
ATCACATTTATGCACTGAAAATCTTTCACTAATGCACATCCCACTGATTT
CCACATTCGATACAAAACAATATCGGTTTCCGTAAGACGCAATTTCATTC
ATACATTTATACACACGTTTTGGTATAATCATGTTTACAAGGACAAAACC
TTATTAAGAAAAGTTAGTGTTAAGTCAAGGGAGTTTAGGGTACACGTTTG
TATATCTACATTGTTTTGCCTATGTGAGAGTTTGACAGTTTATTCTCACA
AGGGGCCGTCTACATAGTACTAACGCACTAAAATGTCGAAAATCGAGTAC
CCCTTCCCCCTGTACGAAAGCGTACGCAAATGGCTATACCCCCTGGTAAG
TACGTACTTTTTCATTCACCCCCCTCCTCGGTTGAAGAAAATTTCGCTTG
GTTCGGACCTTTATTTCATACATGAAACTCAATGTTTATTAAAAAAACTT
TTTCTTTTTCTGCGTATAAGAAGCGTGAAAGTCGGCAAAAAAGGGCTATA
AAAATTTTCTCTGCGTACGTACATTTTCCTTCGACCCCTCCTCTCCCCCT
GTACGCAAGCATACGCTTTTGGGAAGACCCCCCCCCTTAGTGCGTACGTA
CTATGTGGACGGCCCCCAATCTCTGATGAGAGTTTTTGTTTAATCTACAA
AGGAGTGTACAAATGAGAATGTTTTTACTATTCACCTTCGAAGGTGGACC
GAGACCTTCTTCGACTTTCTCATTATTACTTACATAGGAGGTAAAGATAA
TTCATTCATAATTTTAGAATCGAAAATTGAATAAAAGAAGACCCTGGAAG
AAGAATCTCTGCAACAGCACCAGACAGTTGTAAGGCATCATAATTACCAC
ATCGTTTGCCTGCTCTCGCTACAGACAGACGTACTTTGAAGGCATTTTAG
AAAAATGTGGACTCCTAGGTAAAAAGGCGGAGTTTCATTTTATGTAAATA
TTGTATCATTTTTTAAAGAATTTCGAAACTTGTAACAAGATATAACTTTT
CAAATTAGGAAAGATGAATCTAGATTCCAAGAATGATTCTGCGCATAAGA
CTAAACTTCACATTTGTTTTATGATCGGGCTCTTCGAGAAAATGTTCTTC
AGCCAACAGTGGAGGATACATTGTCAAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006431XLOC_006431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011475-exon-sc0000128-1575043694:191731..191889TCONS_00011475-exon-sc0000128-1575043694:191731..191889Clytia hemisphaericaexon
TCONS_00011475-exon-sc0000128-1575043694:189859..190222TCONS_00011475-exon-sc0000128-1575043694:189859..190222Clytia hemisphaericaexon
TCONS_00011475-exon-sc0000128-1510915933:191731..191889TCONS_00011475-exon-sc0000128-1510915933:191731..191889Clytia hemisphaericaexon
TCONS_00011475-exon-sc0000128-1510915933:189859..190222TCONS_00011475-exon-sc0000128-1510915933:189859..190222Clytia hemisphaericaexon
TCONS_00011475-exon-sc0000128-1491911889:191731..191889TCONS_00011475-exon-sc0000128-1491911889:191731..191889Clytia hemisphaericaexon
TCONS_00011475-exon-sc0000128-1491911889:189859..190222TCONS_00011475-exon-sc0000128-1491911889:189859..190222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000128supercontigsc0000128:189859..191889 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.452642	0.0133052	0.00591229	0.00293429	0.0145484	0.0194853	0	0	0.00107104	0.0109965	0	0.00404738	0.00400124	0	0.00406159	0.00481219	0.00196756	0.00346091	0.0090179	0.00172567	0	0	0.00307391	0.68792	0	0.0142811	0	0.00780596	0.00228184	0.00921649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top