TCONS_00011556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011556
Unique NameTCONS_00011556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011556 ID=TCONS_00011556|Name=TCONS_00011556|organism=Clytia hemisphaerica|type=transcript|length=2107bp
CTGAAGTCCCATCTGAAAAAGCCCCCTTCAGTTACACAAAATATAAAAGG
TAAATCAAATTGTATACATACTCTTGACTGATTAACTACATTGGCGATGA
CAACAAGTTTTCCATCGTATTTTCCTCCATTGACAAGTGTCACACGTCCG
GCTTCTACAAACTTGGTGAAACCCTAGAAtaattttaaacaaattctTCA
TATCAGGTACAAcagtttccaaaaaaaatttgtcaatgAAAATGTCTCCA
CAGATTTCAAAGATTATCATATGACATAAAGTAATAAAGCGAAATGATAC
AAGGATATGAAATAGAGGATTCACTAACCATGCTGACCTTCAGGAGTCAG
TGATTAAAAAGAATGTTCATGCGTTTCTATACTTTCTTTACGAGACCGAA
ACTTTTTGAGCACCCGGCTGAGAAAACTTTTAACttaaaaaccgggggtc
aaactATCATATTTCTAGTCATTTTGAACCCCGGATTGTAGACTTTTTAT
ATAGAGAAGAAATAAATTCAGGGGGTACCGCTCCAAAGAGAAAATCACCT
TCCATTTTGAAAGATGGCGGCGCCGGTCACAGtTCCAAGGAATTTCCGCC
TTTTGGAGGAATTAGAAGAAGGACAGAAAGGAGGTGATGGCACTGTTAGT
TGGGGTCTGGAAAATGATGATGACATGGAGTTAGTTCGATGGACTGGTAT
GATCCTTGGCCCTCCAAGAACAGTATTCGAAAACAGAATTTACAACTTGT
CACTGGTGTGTGGCCAGAAATACCCCAACGAAGTACCTACTGTGAGATTC
ACTACACGTGTAAACATGAGTTGTGTGGATAGCGCTGGAAAGGTTGAAGC
CAAATTAGTGGGGGTTCTGGCCAAATGGCAAAGGACGTATACCATTAAAA
CTGTTCTCACAGAGTTGAGGAGGATTATGACCGCAAAGGAGAATTGTAAA
TTATCCCAACCACCAGAGGGATCTTCATATTAGAGCGAAGCTGGGCTTCA
CCATTACAATTTCTTATAAAGACTCACTTTGTAGATGATAATTCGAGCGT
TGGGTGAAACTGTTAGGAGATGCATGGGGATAGAGCCCTGCGTTTTACCG
GACACGGACATTCTCCTTTGGAAAACAACAAATTACATCAAGTAAATCAT
GAACATTTGATTCACCGAATAGACTCGTCAACGTAACTCAAAATTACTGA
AACAGAATGGCTTCAAATTTGGAGAAGTAAACTTTAAATATAGGGTAAAT
TGAAATCATCAGTATTTAGCATATAAAGTTATCATTATTGTGTTTGTGTA
TAGTTCATTGTCACAATAAATTAATGACAATACAATTATTCCATTTTAAA
GTCCTTCAAATACTTTGGTGAACAAACTTTCACGAACAGAAATTTTGCTT
AAATGAATTGCAAAATATCTTCAACTCCTTTCGCCGAAATTAATGTTGTA
AACTTCCCAATTTAATTTAGGCTTCTGATCATCCTctagcaaaaaaagtt
tcaggtctgcgaatcagactacCTTGGTCGTGGAACTTTCTAAGCTTTAG
TATGTTCCCAGTTTCCGTTAATAATGTCTCACTTTAGCTGTTTTCTTGCA
atcttttattttgactttttatctAGCAATGTCAGAATATTTATCAAACA
AATCTTGTGTAGCGAAAActagagaaaatgaaaaaactagAGTAAAAAct
taagttttgagaatttttcgacCCACCCCGCCTTATTCCAAACTCCCCGT
TTATTAGGAACCCGAGAGTATATTAAAAGCTCTTTTAACCCgagcaacaa
aaaattttcgataacgtttgaaatctttattcattttcaaaaaacgaCGA
TGTCATCAATGAGGccgaaattttcaccaaagatggcCATTCATATTTAG
TACacactttcaaaatttcaagtttgacAATAGGACCCCCCTCTAatatt
tttttcgctttattcttttttgctcaaattttgtgagACAACTCCGTGTG
ACAtgtatttttggggaaaaatggcgaaattcTTCAAATTAAATTCGCAA
AGCATACAGTAGTTTACGACACAATAAACTTGTTTTGAATCATGAAACAT
CCTTGGG
Run BLAST on NCBI

protein sequence of TCONS_00011556-protein

>TCONS_00011556-protein ID=TCONS_00011556-protein|Name=TCONS_00011556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MAAPVTVPRNFRLLEELEEGQKGGDGTVSWGLENDDDMELVRWTGMILGP
PRTVFENRIYNLSLVCGQKYPNEVPTVRFTTRVNMSCVDSAGKVEAKLVG
VLAKWQRTYTIKTVLTELRRIMTAKENCKLSQPPEGSSY
Run BLAST on NCBI

transcript from alignment at sc0000130:518612..528497+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011556 ID=TCONS_00011556|Name=TCONS_00011556|organism=Clytia hemisphaerica|type=transcript|length=9886bp|location=Sequence derived from alignment at sc0000130:518612..528497+ (Clytia hemisphaerica)
CTGAAGTCCCATCTGAAAAAGCCCCCTTCAGTTACACAAAATATAAAAGG
TAAATCAAATTGTATACATACTCTTGACTGATTAACTACATTGGCGATGA
CAACAAGTTTTCCATCGTATTTTCCTCCATTGACAAGTGTCACACGTCCG
GCTTCTACAAACTTGGTGAAACCCTAGAAtaattttaaacaaattctTCA
TATCAGGTACAAcagtttccaaaaaaaatttgtcaatgAAAATGTCTCCA
CAGATTTCAAAGATTATCATATGACATAAAGTAATAAAGCGAAATGATAC
AAGGATATGAAATAGAGGATTCACTAACCATGCTGACCTTCAGGAGTCAG
TGATTAAAAAGAATGTTCATGCGTTTCTATACTTTCTTTACGAGACCGAA
ACTTTTTGAGCACCCGGCTGAGAAAACTTTTAACttaaaaaccgggggtc
aaactATCATATTTCTAGTCATTTTGAACCCCGGATTGTAGACTTTTTAT
ATAGAGAAGAAATAAATTCAGGGGGTACCGCTCCAAAGAGAAAATCACCT
TCCATTTTGAAAGATGGCGGCGCCGGTCACAGGTAAgcttcaattttcaa
tttcaatttcaatatctttttataACAGTTAAAAATGAGCTAAAAGATAC
AATTCcatgaataaaaatatcctatAAGAGGATTTCAAAGCTATTCACAG
TAAAAATAACCTATTATGGAATATAGGTTACAAGGAAAAACATAATATAT
ACGTTATTTTACAGTTTactattaaaaacaaaatataaacagGGAAGAAG
GACTATATAgattgtcccatgaaacaactAAGAGAAAAAAAGCATTTCAC
CAATAAAATGTGAATTTAGAAATACTATATGTTATGTGGATAAAAAGCTC
CACAAGGTTCAACAACCACAAGGTGTCAATCAAAATTATATATAAATCAA
ATGTCTatataaatcaaaaatgtctAGAAATCCCTAGAAATATAAGAGAT
TATTTactcatttttcaaatctttcttcaAATGAGTAGAGAAAGCTGTAG
AAGAGTACTCAGCTAATTTATAACAATTCCTATGGTTCCAGAACTGAGGC
CCATGGAACATTAGCGGACANGGCGTCGTTGCAGTAAACGCTTTGTATTC
TGTTTGCAAGATAACTTCGAAACCATGATAGAACAGGACCCCTTATTcca
attttttcgattttttttagcAGTATTGCATGATTAACTNAGATTCATTA
ATTCTACCCAAGCCATTGGTTACAGGGGAACCCCATGAAGTTATACCGTA
TGTCAGATGTGAGTTCACTAAGGCATAAAAAAGAGATATCATATTCTTTC
TAGGAAGAAACCAGCCAACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNATTTGTAGATAAAATTTGTGAGATGTAGGATTGCAC
AAGAGGTAGACTTACCTTTCTGGAACCCATATTGaccatcaaataaaatt
ttgttcTTGTCTAGAAATTCAGTAATTCTCTCATGGACAATTTTCTCAAA
GAtcttatcgaataatggaaggACTGATATCGGTCTGTAGTTTTTTATAT
CCGTCTTATTCCCACTTTTGAAAAGAGGTGTAACTTTTGCATGTTTCAGA
AGTCCCGGGAAGACACCTGTGGACAGAGATTTGTTGATTAGTATTGCAAG
TGGATTGGAAATTAGcttagcaaatttttttttacagattcCACTTTTTG
AGGTCCAACTATTAAAGCCATGTATTCAACGATTCTTTATCTCGACTATA
GAAAGCCTCCAAATCTTGGACTGCATTCCTTTTACTTGTTTTGTCAATGA
AGTCCATCCCCAATAAATGTCATTTTCAATCGAAATGGCatgggcagttc
cagaaaaaatccataACACCCCTGTGGTGTGGACGACagagatttttcga
tttttttttcacttgaacatccttaaaaaataaaaaaagaactcTAAGGT
AAAATCCATGTCGCCCACAGGGGGCAGCAGACTATAACTGGAACTGCCCA
ATGTGACACAGCAAATCTCAAGTCTCTGAAACATACAGTAGGGAATATGT
TAATGCCCCCACCAGACCAAAAAGGGCCCAACGAATAGGATAGGATTTTG
AACGCGAATAATCTTTGACAAACAGCTGAAATAAACACAAATATCAAGTG
TTACAATCACTAACATAAAATAACCTAAGCTAAGCAAATATATACAGGCA
GTCAGTGTGGTAGACGTGCCAGAAAATCcgaacaaaatttcaaaaacgcC
TTAGTGAGAAATttagaaatccaaaaaaataggCAAGAAATAGGTAGGCA
GAGAATGAAGgctaaggcggcaatcacaaatatcttcatttcgcgtcctc
gttggatttaaaaagtgagtcggtcagtcggccggtcggtagtaaaaatt
tttgggttttctttaAGTTGGTCTGCGAGGCGGTAAAAGGTAAAAGGGCG
TTAACTGAGGCGGCAGAAGGCCCAATCGCGTGTATGTTTTGCAtggtttc
agattatgaaatttAAACACTGTGACCTTTGACACATAATGGCacgtgta
atgataaacaaagttaaaatgctgcgaatgcgctagaaatcgctcacaaa
aattggcaaaaataaaatttttgagcaaaggaaacgtcatcaaaacaaaa
agtccaAAGAATTTACCGACTCTCCGActcaattttactcaattttatGG
AGACGGTCGGGCGACgcaaaacgaagatatttgtgattgccgcctaagtT
ATATTATAATTATAATATACTATATAACAATTATAGTGATTGTTATAGGG
AGGCTATATACAAAACCGAAATCCAAAAATTTCTTACTAAAATCACTGTC
TAAAAAGCACTAGATGTTACCACCCAACACATCATATTATTTGGATATCT
TCTCTAGGGGTATCCTTCAAATTTCTTCAGCAAGCGGCGGTGGGAAACAG
TATCGAAGGCTAGTAAAATCCAAATACttcaagggaagaaattttggtgg
gaatttgatttggcggatgaattgaaaaatcaaattttgcgggaattttA
TTTGGCGGATGAAGGACATTTTAGCCATTAAtaagaaaaaacctgtttta
aggcctgaaatagcacacatttggggaataaatacaataatttaaatttg
gcgggaatttaatttggcggaaggtttgaaaatttaaatttggtgggaac
ttactttggcggattttgaccaaatttctcccctatgtgttcacctttct
tgacacattctctttaattgatcatatctttagaacaacaaatttttata
tatcaaaagtatatattttctgaaagccaataatattctctttctaatgg
taaaagtttcagctgaatttaaaaaactgggcaggatataattatgatct
taagaattttgaccttacctacttcaaagaagttaaagtcacccatagct
tttgaattttgaaaaaataatttcgatactatgttcccaatagattgaac
taaaaaagtgtcttgggattttttttgggattgacttcaactctttaaat
cctaagttctgtaaaaatatcgataaaaaagtaaatttaaatgtgatttt
ttcagttatctgtaaattgaggaaaaacaactcggttagaaataaaatcc
taagacactttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttctctcttttgtctttgatgtttccgaaagagacaat
tatttgagtaaataatccatcataagacgagctttgttttgaaatttaaa
tggttataactccggattaaaaaaagattttaagatcgcgattttaccaa
aatgaaatccagtaacttttcttccactttgactgaaaaaaaaatttttg
acaaaaaatcggaaaaaaggtgtacacataccttaaggtATATATTGTAT
CAACTACCGTGAGTGGtactaaatccgacagccctgcctaaatccaaccc
cccaaataactgctatgaaaaaaaattctatgtttacaaacattccctct
tcaagttgaacaataaactattggaAGAAATctagaaacaaaacatctaa
caagatgactataatgtcaagatgtcaattaatgtgatcaaaaaagtgcg
agttgtaaaaataattacctctattattctgaatctgttgcttgtgttta
aaacgttaacaattttgtaataaaaaattatgttttgtataagaagcaat
tattgttatttgaaCCATTTAGTTAAGTGTATCAAACctttcagtttagt
tgacactttggtatcttcattgcgtcacagcgaaagatttgttttcattt
tgtatctttgaaagaccccattggatttaggcagggctgtcggatttagg
accactcacggtactttACCATTAGCAATGCATTCGCAACACTTATTCAA
GTAGTTCAGGAGTTGATTGGTGACTGATGAAGCCACATTGTTTATTTTTA
CAATAGCTTTTGATCTTGCAGATGATTCATGATAGGCTTCCTTAGAAATG
ATTCCATCAATTTACAGACAACAAAGGTCAGGCTGACTTGTCTATAGTTA
ATTGCTAGAAATAAAAATGCAATGCtaaattttgaagcaaaataaaaaaa
gcaaagcaaaattttgaagcaaaataaaagaattgaaagGGCTTTTCAAA
CCAATTTTGACTTTTGTGATCTTATTAAGTTTTGGGGCATTGTACTGTAA
AATTTGGaatgatggaaatgtatgcttgtaataatggaAAGGGCAGTCTA
GATCAAACttctatatcaggattagaaacttgGCTAATGTTACCTCTTTT
CTCTTTCCCTTTGcgacaatacaatgctgacaaatTGACACGACATATTG
ACATTTATGTAATTGGTGTAATCCCTGTCATGAAGTTTATATTGAAATAT
GcaacaaaaatgaaagtggtctcttctactgatggCTTTCCGGCACTCCT
TCACagactgtttatcaaatttccaccaatgagatttCCGCATTTCACAC
AGCCCTCTTTTTTGGCACTTGTgccctctcagtgccttgcacaaaGGGCA
GCTATAAAATCTCTCACCCTTCATATTTGTTTCAGTCCAtgatcctaagg
cttaggttttttctcatcttcaattctctgaagaaagcgggaatgcaatg
caagagttagattgtcaacaaagtgccataaaatcattgaataaaagaag
aacttcaaatcttaaatattttcattttgaagaattggtgcaaaaaaagt
gaaacatggaaaagtttcattttttattggtttaatCGAAAAAGGGAATT
TGGAATACTTTTTtctatgtttggttttttgcacaaacccctgtaactat
agGTGAGCCTCCCGNgatttggaaaacttttttttatgtttGGTTTTTTG
CACAAGCCCCTGTAACTATAGGCGAGCCTCCCGTTGCTGAGatattggct
tgaaatcgaaactgaaaccactgaaaatgaaagtaaaatggGCCCGTACT
CAAAATCTTGATATATGAGTTTAAGGGAGGGAGAAATAGTAGGCTTTATC
ATTTGAGCATAACATCTTCTTTATCTTAATTGAACGTATCTAAAAGCCTA
ATCTCTTTACAGTACAGTAGTACAGAAGAACCCTGGTTTAATAGAGACTC
CAGAGTATATCCTTGCTGCATTTGAAGGGATTCTGTTCAAAGGAACAACT
TTCCCTGAGGAAATACAGGAAaatgggtttgtttacctccctaGGACAAA
CACTAGAGAGCAACAAAATATGTatgcaaaagtttttgaaattacaggaa
aagtgtattttttatgttcagaaatttcaaagacATTACCAAGGAAGTAG
GCTAAATTTCTTTGAGATCACGTATCAAATATCTATACTGAAAACTATGC
CTTGATCTTTCTAGTTTGAAAGGTCATTCGGTCAGAAAAATCTAATTGGA
CTCAAAGACTTTTATAGGATAAATTGACTctgaaaaactgttaaaaatgt
tGGTGAAACTTTAAAGTATGATCGGTCAAACTTTACTGAATTTGTTGAAT
TAGTAGAACAGTTTGTGTAATGAATTTTGTGGTTTTCTAAATCATGTtat
ttgtctattatttcatCTGTTTGATTTTAATTTGGATTAATCACtatcaa
aacaataaattagttttgtctttattttgtttttcagtTCCAAGGAATTT
CCGCCTTTTGGAGGAATTAGAAGAAGGACAGAAAGGAGGTGATGGCACTG
TTAGTTGGGGTCTGGAAAATGATGATGACATGGAGTTAGTTCGATGGACT
GGTATGATCCTTGGCCCTCCAAGAGTGAGTACACACGCGGGCACTAGGCT
TTccttttaaaacattaaaaaactgCGCGCAATCTTAAATTTCAATGGCA
GGGAAGGGCTAATTCCAGAGTAATTGCCTTGGACACAACAATTGCCCCTA
ATTGTAACGTTTACAACAATTGAGATTTTTTATAAAGAAGAAATATATTT
CTATTAGAAAAGAGGGGAGCAGTTGTCTTGGGTAGGGGACTATACCCCTT
CAAAATCGTTGACTTTCACATCTTTTCATtcatcattaaaatatttatat
ttgtaAGTTACGAACCTTgaattttatccatttttacAACAGACAGTATT
CGAAAACAGAATTTACAACTTGTCACTGGTGTGTGGCCAGAAATACCCCA
ACGAAGTACCTACTGTGAGATTCACTACACGTGTAAACATGAGTTGTGTG
GATAGCGCTGGAAAGGTTAGTATTTTGAAATCGAACTCCGAggtctttcc
ttttttttggttttggagccattgaaaaggaaaatagtTTGTAGTTAACA
CTTTAAGGACCGGACAGCCCTTAAATATAAAGTTCACTTAGCATACTTTC
CTCACAATGCAATTGGACTTGACCGAACATGATGACAATGTATTGATTGT
TGTTCCATTTTTCTAGGTTGAAGCCAAATTAGTGGGGGTTCTGGCCAAAT
GGCAAAGGACGTATACCATTAAAACTGTTCTCACAGAGTTGAGGAGGTGA
GAGCATTTTGTTTAATCTCAAAAGATTGGTAACTCTTTGATACCTTATAA
ACTTGAAAGTATTCCTCCCAAGACAAGCACATTCCAGCTCTTtgcttttt
gattttctttcacTATTTTTAAAGGTTACTTTTTCCACCCTATTTTTTAT
AACAAATTAAGAAATTTGTTGAATATAAGAACTAAAGTCGAAGAACATGA
ACTTTTGTATAATTgtgctatgatcttcatttttatatcataaaaacttt
taaatcttaGAACGTTGTCATAAATgcttaaaaataataaatattccAAG
AATAATGCATTTTTAAAGGgctctttttgttgtttttgatggttttggaA
GTCAACCAGTGATAAGCTTTAGGCTATATCTTTCGATAgataaaaaaatc
actcgtgtgaaaatTATAAATATAGCTCtgttattgaagaagttgatttt
ttcttcttcactttcaatCTTAATTTTCcgacattttttgattttttttg
tttttgataatacACCACTCTTGAATATCTCTCTAACAAGCACTAAAACA
TTATTCAATTCGAAttctctatcaaaagttacggACTTTTTTCgtctccg
ctgcagattatattgagacagacttcaGAACCATAATGGAATTTGAATGG
TTTAAATTTCATGGGCTATATAAATAGTTTGCTGTTTAgtctattttatt
ttcttactcAGGATTATGACCGCAAAGGAGAATTGTAAATTATCCCAACC
ACCAGAGGGATCTTCATATTAGAGCGAAGCTGGGCTTCACCATTACAATT
TCTTATAAAGACTCACTTTGTAGATGATAATTCGAGCGTTGGGTGAAACT
GTTAGGAGATGCATGGGGATAGAGCCCTGCGTTTTACCGGACACGGACAT
TCTCCTTTGGAAAACAACGTACGAACATTACTGTAAAAGGAATGGaattg
aaatttcagaaaaaacctTCGTATTTGCAATTTTctttagaattttattt
ttaaatcaatttagatTCTACTGTTTTTTTTCTAGCCTTTTTTTCTATTG
ACTTTTCCATATTATAATTCCGTGCTTTTCTTAGTTAAATTATGTGCTGA
TTTTGGCCAATTGTCAATACTTGATGAGTACACttaatttcttttattct
ttaattAGAAATTACATCAAGTAAATCATGAACATTTGATTCACCGAATA
GACTCGTCAACGTAACTCAAAATTACTGAAACAGAATGGCTTCAAATTTG
GAGAAGTAAACTTTAAATATAGGGTAAATTGAAATCATCAGTATTTAGCA
TATAAAGTTATCATTATTGTGTTTGTGTATAGTTCATTGTCACAATAAAT
TAATGACAATACAATTATTCCATTTTAAAGTCCTTCAAATACTTTGGTGA
ACAAACTTTCACGAACAGAAATTTTGCTTAAATGAATTGCAAAATATCTT
CAACTCCTTTCGCCGAAATTAATGTTGTAAACTTCCCAATTTAATTTAGG
CTTCTGATCATCCTctagcaaaaaaagtttcaggtctgcgaatcagacta
cCTTGGTCGTGGAACTTTCTAAGCTTTAGTATGTTCCCAGTTTCCGTTAA
TAATGTCTCACTTTAGCTGTTTTCTTGCAatcttttattttgacttttta
tctAGCAATGTCAGAATATTTATCAAACAAATCTTGTGTAGCGAAAActa
gagaaaatgaaaaaactagAGTAAAAActtaagttttgagaatttttcga
cCCACCCCGCCTTATTCCAAACTCCCCGTTTATTAGGAACCCGAGAGTAT
ATTAAAAGCTCTTTTAACCCgagcaacaaaaaattttcgataacgtttga
aatctttattcattttcaaaaaacgaCGATGTCATCAATGAGGccgaaat
tttcaccaaagatggcCATTCATATTTAGTACacactttcaaaatttcaa
gtttgacAATAGGACCCCCCTCTAatatttttttcgctttattctttttt
gctcaaattttgtgagACAACTCCGTGTGACAtgtatttttggggaaaaa
tggcgaaattcTTCAAATTAAATTCGCAAAGCATACAGTAGTTTACGACA
CAATAAACTTGTTTTGAATCATGAAACATCCTTGGG

Coding sequence (CDS) from alignment at sc0000130:518612..528497+

>TCONS_00011556 ID=TCONS_00011556|Name=TCONS_00011556|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000130:518612..528497+ (Clytia hemisphaerica)
ATGGCGGCGCCGGTCACAGtTCCAAGGAATTTCCGCCTTTTGGAGGAATT
AGAAGAAGGACAGAAAGGAGGTGATGGCACTGTTAGTTGGGGTCTGGAAA
ATGATGATGACATGGAGTTAGTTCGATGGACTGGTATGATCCTTGGCCCT
CCAAGAACAGTATTCGAAAACAGAATTTACAACTTGTCACTGGTGTGTGG
CCAGAAATACCCCAACGAAGTACCTACTGTGAGATTCACTACACGTGTAA
ACATGAGTTGTGTGGATAGCGCTGGAAAGGTTGAAGCCAAATTAGTGGGG
GTTCTGGCCAAATGGCAAAGGACGTATACCATTAAAACTGTTCTCACAGA
GTTGAGGAGGATTATGACCGCAAAGGAGAATTGTAAATTATCCCAACCAC
CAGAGGGATCTTCATATTAGATGGCGGCGCCGGTCACAGtTCCAAGGAAT
TTCCGCCTTTTGGAGGAATTAGAAGAAGGACAGAAAGGAGGTGATGGCAC
TGTTAGTTGGGGTCTGGAAAATGATGATGACATGGAGTTAGTTCGATGGA
CTGGTATGATCCTTGGCCCTCCAAGAACAGTATTCGAAAACAGAATTTAC
AACTTGTCACTGGTGTGTGGCCAGAAATACCCCAACGAAGTACCTACTGT
GAGATTCACTACACGTGTAAACATGAGTTGTGTGGATAGCGCTGGAAAGG
TTGAAGCCAAATTAGTGGGGGTTCTGGCCAAATGGCAAAGGACGTATACC
ATTAAAACTGTTCTCACAGAGTTGAGGAGGATTATGACCGCAAAGGAGAA
TTGTAAATTATCCCAACCACCAGAGGGATCTTCATATTAGATGGCGGCGC
CGGTCACAGtTCCAAGGAATTTCCGCCTTTTGGAGGAATTAGAAGAAGGA
CAGAAAGGAGGTGATGGCACTGTTAGTTGGGGTCTGGAAAATGATGATGA
CATGGAGTTAGTTCGATGGACTGGTATGATCCTTGGCCCTCCAAGAACAG
TATTCGAAAACAGAATTTACAACTTGTCACTGGTGTGTGGCCAGAAATAC
CCCAACGAAGTACCTACTGTGAGATTCACTACACGTGTAAACATGAGTTG
TGTGGATAGCGCTGGAAAGGTTGAAGCCAAATTAGTGGGGGTTCTGGCCA
AATGGCAAAGGACGTATACCATTAAAACTGTTCTCACAGAGTTGAGGAGG
ATTATGACCGCAAAGGAGAATTGTAAATTATCCCAACCACCAGAGGGATC
TTCATATTAGATGGCGGCGCCGGTCACAGtTCCAAGGAATTTCCGCCTTT
TGGAGGAATTAGAAGAAGGACAGAAAGGAGGTGATGGCACTGTTAGTTGG
GGTCTGGAAAATGATGATGACATGGAGTTAGTTCGATGGACTGGTATGAT
CCTTGGCCCTCCAAGAACAGTATTCGAAAACAGAATTTACAACTTGTCAC
TGGTGTGTGGCCAGAAATACCCCAACGAAGTACCTACTGTGAGATTCACT
ACACGTGTAAACATGAGTTGTGTGGATAGCGCTGGAAAGGTTGAAGCCAA
ATTAGTGGGGGTTCTGGCCAAATGGCAAAGGACGTATACCATTAAAACTG
TTCTCACAGAGTTGAGGAGGATTATGACCGCAAAGGAGAATTGTAAATTA
TCCCAACCACCAGAGGGATCTTCATATTAGATGGCGGCGCCGGTCACAGt
TCCAAGGAATTTCCGCCTTTTGGAGGAATTAGAAGAAGGACAGAAAGGAG
GTGATGGCACTGTTAGTTGGGGTCTGGAAAATGATGATGACATGGAGTTA
GTTCGATGGACTGGTATGATCCTTGGCCCTCCAAGAACAGTATTCGAAAA
CAGAATTTACAACTTGTCACTGGTGTGTGGCCAGAAATACCCCAACGAAG
TACCTACTGTGAGATTCACTACACGTGTAAACATGAGTTGTGTGGATAGC
GCTGGAAAGGTTGAAGCCAAATTAGTGGGGGTTCTGGCCAAATGGCAAAG
GACGTATACCATTAAAACTGTTCTCACAGAGTTGAGGAGGATTATGACCG
CAAAGGAGAATTGTAAATTATCCCAACCACCAGAGGGATCTTCATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006476XLOC_006476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011556-exon-sc0000130-1491911889:518612..519193TCONS_00011556-exon-sc0000130-1491911889:518612..519193Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1510915933:518612..519193TCONS_00011556-exon-sc0000130-1510915933:518612..519193Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1575043694:518612..519193TCONS_00011556-exon-sc0000130-1575043694:518612..519193Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1491911889:525499..525635TCONS_00011556-exon-sc0000130-1491911889:525499..525635Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1510915933:525499..525635TCONS_00011556-exon-sc0000130-1510915933:525499..525635Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1575043694:525499..525635TCONS_00011556-exon-sc0000130-1575043694:525499..525635Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1491911889:525954..526076TCONS_00011556-exon-sc0000130-1491911889:525954..526076Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1510915933:525954..526076TCONS_00011556-exon-sc0000130-1510915933:525954..526076Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1575043694:525954..526076TCONS_00011556-exon-sc0000130-1575043694:525954..526076Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1491911889:526278..526357TCONS_00011556-exon-sc0000130-1491911889:526278..526357Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1510915933:526278..526357TCONS_00011556-exon-sc0000130-1510915933:526278..526357Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1575043694:526278..526357TCONS_00011556-exon-sc0000130-1575043694:526278..526357Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1491911889:527073..527279TCONS_00011556-exon-sc0000130-1491911889:527073..527279Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1510915933:527073..527279TCONS_00011556-exon-sc0000130-1510915933:527073..527279Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1575043694:527073..527279TCONS_00011556-exon-sc0000130-1575043694:527073..527279Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1491911889:527520..528497TCONS_00011556-exon-sc0000130-1491911889:527520..528497Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1510915933:527520..528497TCONS_00011556-exon-sc0000130-1510915933:527520..528497Clytia hemisphaericaexon
TCONS_00011556-exon-sc0000130-1575043694:527520..528497TCONS_00011556-exon-sc0000130-1575043694:527520..528497Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011556-proteinTCONS_00011556-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:518612..528497 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
81.7911	92.2961	80.6659	87.6125	36.4539	30.1135	34.257	40.053	44.2818	42.6068	45.4704	38.9961	40.7851	45.4567	38.4776	44.545	58.0829	46.2894	25.9123	28.2783	50.5016	50.7826	50.6607	55.1457	34.6036	32.8928	59.3723	54.5468	40.0089	35.5268
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Blast
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BLAST of TCONS_00011556 vs. Swiss-Prot (Human)
Match: UB2V2 (Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4)

HSP 1 Score: 179.104 bits (453), Expect = 3.372e-52
Identity = 92/137 (67.15%), Postives = 113/137 (82.48%), Query Frame = 3 
Query:  576 VTVPRNFRXXXXXXXGQKG-GDGTVSWGLENDDDMELVRWTGMILGPPRTVFENRIYNLSLVCGQKYPNEVPTVRFTTRVNMSCV-DSAGKVEAKLVGVLAKWQRTYTIKTVLTELRRIMTAKENCKLSQPPEGSSY 980
            V VPRNFRLLEELEEGQKG GDGTVSWGLE+D+DM L RWTGMI+GPPRT +ENRIY+L + CG KYP   P+VRF T++NM+ + +S+G V+A+ + VLAKWQ +Y+IK VL ELRR+M +KEN KL QPPEG +Y
Sbjct:    7 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 143
The following BLAST results are available for this feature:
BLAST of TCONS_00011556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2V23.372e-5267.15Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo ... [more]
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