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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011559 ID=TCONS_00011559|Name=TCONS_00011559|organism=Clytia hemisphaerica|type=transcript|length=1915bp
taatttttgtttgaaatttctttatttagttcagaaaaagatcaaaaata
tgaaaatattgaagatgCCATTGAACTTCAAATATATCTGGACATCAAGC
TACTTTGGTATTTGGAGAGATGAGAATACAATGGAGGTCTTAACAATTTC
TCGCGAGATGTTTTCGTTTCCACCACGCATGTGCTATCTTCTGGGCGATC
TTGTGAAATGCGCTCACGTTTATTGATGTACAGGCTAGCTTCGGTTGGTT
GGTACGGAACACCGGCTAATTTGCAGTTCTCAGCGATGCGTGCACGGTTT
GACATATCTATCTTCCATGCTGGAGTGTACAGTTTTGGAATGACTGGATG
GTAAGCAGAGAATTTGGATGTTTTATCCTCCATGTTGGTGTGTTGTACGT
TGTCCAAAAGAATTGAGTTTGCAGGACTTTGAAGACGATGGGGCCACTAC
CTTACGGGCCCGTGACCCGCCACGTCAACGCGTCAAATGGGCCGGATAAC
GAACGCGCAAAATTTTACGCCACAGAGTATTCAGTTAGCCATGGTAAATC
TGGCTTCGTAGCGCGACCAGGGAAACACACAGGGACTGGGTATCAAAGCA
ACTTTCGACCTGGCTTATTTTACAGCAGACGGCTCGATGAAATTGACAAC
CCTAAACTTGGAGATGAATTATTGAAGAATTACTCATCGAGCAACTCTTT
CCAATTCCGTAAATCTGCTGGTCCAAACGGGACCGACCAACTGCCCGGAA
AACTTCACATGGCCAAGAACTCTTTCGTTCGTGATCTCCATCCAACGCTA
CCTTGCTCACGACAGATCGGGGAAACGTTGAAAATCAATGCCACCAATAA
GTTCAATAAATCGCCAGCATCGCTTTTAAAACTACGGAGCAATGTAAGAT
CTGGGTTACTTGAAGACCATCCAAAAGCTTCTCTTGCTACAGAGAATACA
ACAGAGTTTGAAGATCGTATCCACGAGCAAACACAACTCACATCTAAACC
AGACATTGGTCCCAAATGTGAATCAGGCTTCACCAATTCTTTAAGCAAGG
AGCCAATCACATACCGGGAAGATGAATGTTATGGAACGCAGAATGTCTGT
CGAAGACCAACAGGTATTTCAAATATGCGAAACTCATTCCAACCTTTACA
CAGCGCTGACGGTAAAGAAGAATACATACTGTTATCTCAGCGAGCCGCTA
ATGTCAACGGATATACAAAAAGCATGAAACCACGCGCTGAGTATGCGCTA
CATAGACTAGATACCTACACTAAAGCGAACGATCTACAACCTACCATGCT
ACGCAGGCTACAAAAGAACGATAAAGGTGAATTCTTCAACGTCTTGTATG
CAGCACCCTTCCCAAGTATGAACAGTGCATCCTATACTCGCCATCCGAAA
CCCAATTCGGGACCGGAAAAGCGAAGAATCGGACCAAAAGAAGAAACCGG
TTTTACAGAGAACAACTGCAAGTTCATCCCGACTTTGGAAACAGGGCAAT
CTTTGAAACGTTTCGATACTCACTACAAGGCACGTTTCTGTAACAAGAAT
TTGAAACCAGTTCCCTTCACCGCAAATCCTGGCAAAACCGCGTTGATGGA
AAAGGGGAATGGGTTTAGTAAGAGCACACGTGTTCATTCGCCCATTGGGA
AACGAATTGACTTCACTCTGCCCACAATGCACCCTTATGTTGTTCGAAGC
AATGCATCACGGGATCCATCATATGTTAATTAAAGCATTGATTGAAATGA
TTTACTTAGGGAAAGAAAGTtgattaaaaatttaaacaaaaacaatgcTT
TGATAAATTCTTAAACTTAATGCTAAAATCGGCAAGATGTGACACTGGTT
CAGGATCCCTTATTcgttttttttggacctacctggaggtcctataaatt
aacctttgtccgtcc Run BLAST on NCBI transcript from alignment at sc0000130:535820..538365+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011559 ID=TCONS_00011559|Name=TCONS_00011559|organism=Clytia hemisphaerica|type=transcript|length=2546bp|location=Sequence derived from alignment at sc0000130:535820..538365+ (Clytia hemisphaerica)
taatttttgtttgaaatttctttatttagttcagaaaaagatcaaaaata
tgaaaatattgaagatgCCATTGAACTTCAAATATATCTGGACATCAAGC
TACTTTGGTATTTGGAGAGATGAGAATACAATGGAGGTCTTAACAATTTC
TCGCGAGATGTTTTCGTTTCCACCACGCATGTGCTATCTTCTGGGCGATC
TTGTGAAATGCGCTCACGTTTATTGATGTACAGGCTAGCTTCGGTTGGTT
GGTACGGAACACCGGCTAATTTGCAGTTCTCAGCGATGCGTGCACGGTTT
GACATATCTATCTTCCATGCTGGAGTGTACAGTTTTGGAATGACTGGATG
GTAAGCAGAGAATTTGGATGTTTTATCCTCCATGTTGGTGTGTTGTACGT
TGTCCAAAAGAATTGAGTTTGCAGGTTGGatttctttttggttttgttag
ttatttttgacgtcaaattttctttaaataaaatattttgacgtcaattc
ttCAAGCTATTTTGAATACAAGACATCAGTTTTTTGAACGGAACTGTGAA
ATCTCGCTGTTAGACTCTATAATTTTAGGACTTTGAAGACGATGGGGCCA
CTACCTTACGGGCCCGTGACCCGCCACGTCAACGCGTCAAATGGGCCGGA
TAACGAACGCGCAAAATTTTACGCCACAGAGTATTCAGTTAGCCATGGTA
AATCTGGCTTCGTAGCGCGACCAGGGAAACACACAGGGACTGGGTATCAA
AGCAACTTTCGACCTGGCTTATTTTACAGCAGACGGCTCGATGAAATTGA
CAACCCTAAACTTGGGTAAGATAACATTTcctaattattttcaaactttt
tgcaTCACTTGGCAATTTTATCTACTTATTTGCTATCTTGTATAGATATT
TCAATAGTCCattagaaactttaattttcaaaaaattaaaagtcttATTC
TAGAGTTAGAATTGGGATAGGGAGTTTTCTTGAGAGAGAAATATGCTTGC
TAGTATGCTGAACTCTTCATCATTTTAGAGATGAATTATTGAAGAATTAC
TCATCGAGCAACTCTTTCCAATTCCGTAAATCTGCTGGTCCAAACGGGAC
CGACCAACTGCCCGGAAAACTTCACATGGCCAAGAACTCTTTCGTTCGTG
ATCTCCATCCAACGCTACCTTGCTCACGACAGATCGGGGAAACGTTGAAA
ATCAATGCCACCAATAAGTTCAATAAATCGCCAGCATCGCTTTTAAAACT
ACGGAGCAATGTAAGATCTGGGTTACTTGAAGACCATCCAAAAGCTTCTC
TTGCTACAGAGAATACAACAGAGTTTGAAGATCGTATCCACGAGCAAACA
CAACTCACATCTAAACCAGACATTGGTCCCAAATGTGAATCAGGCTTCAC
CAATTCTTTAAGCAAGGAGCCAATCACATACCGGGAAGATGAATGTTATG
GAACGCAGAATGTCTGTCGAAGACCAACAGGTTCTTTTCACATAAATTCT
ACTCTTTCCACATTGAAATCAAGTGAAACAGTCGCTCTATAGTTATCTTC
TACTTTGCCATAAGAGCCAGTGAAACTCAAACATTTTAGGTACTTTCGCA
TGATTATGAGTTTTGTCCACTCTACTTAGTTAAGTCGCTGAGTCCAGTAA
TTCATAACCTCTCAAAAAGGCGCGGCAatccttctttaaagattttttga
tatAAATTTCGGTTTTAACAACTCTAAACCTTTCCTCCTTTCAGGTATTT
CAAATATGCGAAACTCATTCCAACCTTTACACAGCGCTGACGGTAAAGAA
GAATACATACTGTTATCTCAGCGAGCCGCTAATGTCAACGGATATACAAA
AAGCATGAAACCACGCGCTGAGTATGCGCTACATAGACTAGATACCTACA
CTAAAGCGAACGATCTACAACCTACCATGCTACGCAGGCTACAAAAGAAC
GATAAAGGTGAATTCTTCAACGTCTTGTATGCAGCACCCTTCCCAAGTAT
GAACAGTGCATCCTATACTCGCCATCCGAAACCCAATTCGGGACCGGAAA
AGCGAAGAATCGGACCAAAAGAAGAAACCGGTTTTACAGAGAACAACTGC
AAGTTCATCCCGACTTTGGAAACAGGGCAATCTTTGAAACGTTTCGATAC
TCACTACAAGGCACGTTTCTGTAACAAGAATTTGAAACCAGTTCCCTTCA
CCGCAAATCCTGGCAAAACCGCGTTGATGGAAAAGGGGAATGGGTTTAGT
AAGAGCACACGTGTTCATTCGCCCATTGGGAAACGAATTGACTTCACTCT
GCCCACAATGCACCCTTATGTTGTTCGAAGCAATGCATCACGGGATCCAT
CATATGTTAATTAAAGCATTGATTGAAATGATTTACTTAGGGAAAGAAAG
TtgattaaaaatttaaacaaaaacaatgcTTTGATAAATTCTTAAACTTA
ATGCTAAAATCGGCAAGATGTGACACTGGTTCAGGATCCCTTATTcgttt
tttttggacctacctggaggtcctataaattaacctttgtccgtcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011559-exon-sc0000130-1491911889:535820..536243 | TCONS_00011559-exon-sc0000130-1491911889:535820..536243 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1510915933:535820..536243 | TCONS_00011559-exon-sc0000130-1510915933:535820..536243 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1575043694:535820..536243 | TCONS_00011559-exon-sc0000130-1575043694:535820..536243 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1491911889:536398..536634 | TCONS_00011559-exon-sc0000130-1491911889:536398..536634 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1510915933:536398..536634 | TCONS_00011559-exon-sc0000130-1510915933:536398..536634 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1575043694:536398..536634 | TCONS_00011559-exon-sc0000130-1575043694:536398..536634 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1491911889:536848..537299 | TCONS_00011559-exon-sc0000130-1491911889:536848..537299 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1510915933:536848..537299 | TCONS_00011559-exon-sc0000130-1510915933:536848..537299 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1575043694:536848..537299 | TCONS_00011559-exon-sc0000130-1575043694:536848..537299 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1491911889:537564..538365 | TCONS_00011559-exon-sc0000130-1491911889:537564..538365 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1510915933:537564..538365 | TCONS_00011559-exon-sc0000130-1510915933:537564..538365 | Clytia hemisphaerica | exon |
| TCONS_00011559-exon-sc0000130-1575043694:537564..538365 | TCONS_00011559-exon-sc0000130-1575043694:537564..538365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000130 | supercontig | sc0000130:535820..538365 + |
Blast
BLAST of TCONS_00011559 vs. Swiss-Prot (Human)
Match: PPR32 (Protein phosphatase 1 regulatory subunit 32 OS=Homo sapiens GN=PPP1R32 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.493e-17 Identity = 63/222 (28.38%), Postives = 101/222 (45.50%), Query Frame = 3
Query: 438 MGPLPYGPVTRHVNASNGPDNERAKFYATEYSVSHGKSGFVARPGKHTGTGYQSNFRPGLFYSRRLDEIDNPKLGDELLKNYSSSNSFQFRKSAGPNGTDQLPGKLHMAKNSFVRDLHPTLPCSRQIGETLKINATNKFNKSPASLLKLRSNVRSGLLEDHPKASLATEN--------TTEFEDRI----HEQTQLTSKPDIGPKCESGFTNSLSKEPITYR 1067
MG LP G V+ +V S+G + KFYAT Y ++G+ F R G H GTGY+SNF+P + L+ +DNP G++ ++ S S +R P+G LP + + + R+ P ++ E K++ + P ++ L L + + L EN T+E+ + +Q K IG K SGFT + PI ++
Sbjct: 2 MGKLPLGVVSPYVKMSSGGYTDPLKFYATSYCTAYGREDFKPRVGSHVGTGYKSNFQPVVSCQASLEALDNPARGEQAQDHFQSVASQSYRPLEVPDGKHPLPWSMRQTSSGYGREKPSAGPPTK---EVRKVHFDTQ-EHGPQAITGLEPREVPLLHQQQGQDPLERENFRHGPRFMTSEYNSKYLRDPLDQPDFLQKKSIGAKEGSGFTKQSHQSPIVFQ 219
The following BLAST results are available for this feature:
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