TCONS_00011593 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011593
Unique Name	TCONS_00011593
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1517

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000130:504456..519973-
coding sequence from alignment at sc0000130:504456..519973-

transcript sequence

>TCONS_00011593 ID=TCONS_00011593|Name=TCONS_00011593|organism=Clytia hemisphaerica|type=transcript|length=1517bp
GGTTTCTTCCTAGAAAGAATATGATATCTCTTTTTTATGCCTTAGTGAAC
TCACATCTGACATACGGTATAACTTCATGGGGTTCCCCTGTAACCAATGG
CTTGGGTAGAATTAATGAATCTNAGTTAATCATGCAATACTgctaaaaaa
aatcgaaaaaattggAATAAGGGGTCCTGTTCTATCATGGTTTCGAAGTT
ATCTTGCAAACAGAATACAAAGCGTTTACTGCAACGACGCCNTGTCCGCT
AATGTTCCATGGGCCTCAGTTCTGGAACCATAGGAATTGTTATAAATTAG
CTGAGTACTCTTCTACAGCTTTCTCTACTCATTtgaagaaagatttgaaa
aatgagtAAATAATCTCTTATATTTCTAGGGATTTCTagacatttttgat
ttatatAGACATTTGATTTATATATAATTTTGATTGACACCTTGTGGTTG
TTGAACCTTGTGGAGCTTTTTATCCACATAACATATAGTATTTCTAAATT
CACATTTTATTGGTGAAATGCTTTTTTTCTCTTagttgtttcatgggaca
atcTATATAGTCCTTCTTCCctgtttatattttgtttttaatagtAAACT
GTAAAATAACGTATATATTATGTTTTTCCTTGTAACCTATATTCCATAAT
AGGTTATTTTTACTGTGAATAGCTTTGAAATCCTCTTataggatattttt
attcatgGAATTGTATCTTTTAGCTCATTTTTAACTGTtataaaaagata
ttgaaattgaaattgaaaattgaagcTTACCTGTGACCGGCGCCGCCATC
TTTCAAAATGGAAGGTGATTTTCTCTTTGGAGCGGTACCCCCTGAATTTA
TTTCTTCTCTATATAAAAAGTCTACAATCCGGGGTTCAAAATGACTAGAA
ATATGATagtttgacccccggtttttaaGTTAAAAGTTTTCTCAGCCGGG
TGCTCAAAAAGTTTCGGTCTCGTAAAGAAAGTATAGAAACGCATGAACAT
TCTTTTTAATCACTGACTCCTGAAGGTCAGCATGGGTTTCACCAAGTTTG
TAGAAGCCGGACGTGTGACACTTGTCAATGGAGGAAAATACGATGGAAAA
CTTGTTGTCATCGCCAATGTAGTTAATCAGTCAAGAGTTCTTGCAGATAA
CCCAGTTGATGGAGTACCACGTCAACTTTTCTCATTCGCCCAGCTTACTT
TGACCTCTCTCAAGATTAACATCCCTCCTGGTGCAAGAAGTGGAGCCATT
CGCAAGCAATTAGAAAAAGATGACATCAAGGGAAAATGGGGTGCTACTGC
TTATGCTAAAAAGTTAGCCTTACGAGAAGCAAAACGAAACATGAATGATT
TTGACAGATACAAATCTAAAGTTGCAAAACAAGTTaGAAATCGCAAGGTG
AAGGCCATCGTCAAGACTTTGAAGaagaaataaatattgaaaCCTTACAT
TTGAGAATCTATGTTTTTTCTCCATATCTTCTCTGCTATTGAAGGGTTAA
GTTTTGGGATGTTTAGT

Run BLAST on NCBI

protein sequence of TCONS_00011593-protein

>TCONS_00011593-protein ID=TCONS_00011593-protein|Name=TCONS_00011593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MGFTKFVEAGRVTLVNGGKYDGKLVVIANVVNQSRVLADNPVDGVPRQLF
SFAQLTLTSLKINIPPGARSGAIRKQLEKDDIKGKWGATAYAKKLALREA
KRNMNDFDRYKSKVAKQVRNRKVKAIVKTLKKK

Run BLAST on NCBI

transcript from alignment at sc0000130:504456..519973-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011593 ID=TCONS_00011593|Name=TCONS_00011593|organism=Clytia hemisphaerica|type=transcript|length=15518bp|location=Sequence derived from alignment at sc0000130:504456..519973- (Clytia hemisphaerica)
GGTTTCTTCCTAGAAAGAATATGATATCTCTTTTTTATGCCTTAGTGAAC
TCACATCTGACATACGGTATAACTTCATGGGGTTCCCCTGTAACCAATGG
CTTGGGTAGAATTAATGAATCTNAGTTAATCATGCAATACTGCTAAAAAA
AATCGAAAAAATTGGAATAAGGGGTCCTGTTCTATCATGGTTTCGAAGTT
ATCTTGCAAACAGAATACAAAGCGTTTACTGCAACGACGCCNTGTCCGCT
AATGTTCCATGGGCCTCAGTTCTGGAACCATAGGAATTGTTATAAATTAG
CTGAGTACTCTTCTACAGCTTTCTCTACTCATTTGAAGAAAGATTTGAAA
AATGAGTAAATAATCTCTTATATTTCTAGGGATTTCTAGACATTTTTGAT
TTATATAGACATTTGATTTATATATAATTTTGATTGACACCTTGTGGTTG
TTGAACCTTGTGGAGCTTTTTATCCACATAACATATAGTATTTCTAAATT
CACATTTTATTGGTGAAATGCTTTTTTTCTCTTAGTTGTTTCATGGGACA
ATCTATATAGTCCTTCTTCCCTGTTTATATTTTGTTTTTAATAGTAAACT
GTAAAATAACGTATATATTATGTTTTTCCTTGTAACCTATATTCCATAAT
AGGTTATTTTTACTGTGAATAGCTTTGAAATCCTCTTATAGGATATTTTT
ATTCATGGAATTGTATCTTTTAGCTCATTTTTAACTGTTATAAAAAGATA
TTGAAATTGAAATTGAAAATTGAAGCTTACCTGTGACCGGCGCCGCCATC
TTTCAAAATGGAAGGTGATTTTCTCTTTGGAGCGGTACCCCCTGAATTTA
TTTCTTCTCTATATAAAAAGTCTACAATCCGGGGTTCAAAATGACTAGAA
ATATGATAGTTTGACCCCCGGTTTTTAAGTTAAAAGTTTTCTCAGCCGGG
TGCTCAAAAAGTTTCGGTCTCGTAAAGAAAGTATAGAAACGCATGAACAT
TCTTTTTAATCACTGACTCCTGAAGGTCAGCATGGTTAGTGAATCCTCTA
TTTCATATCCTTGTATCATTTCGCTTTATTACTTTATGTCATATGATAAT
CTTTGAAATCTGTGGAGACATTTTCATTGACAAATTTTTTTTGGAAACTG
TTGTACCTGATATGAAGAATTTGTTTAAAATTATTCTAGGGTTTCACCAA
GTTTGTAGAAGCCGGACGTGTGACACTTGTCAATGGAGGAAAATACGATG
GAAAACTTGTTGTCATCGCCAATGTAGTTAATCAGTCAAGAGTATGTATA
CAATTTGATTTACCTTTTATATTTTGTGTAACTGAAGGGGGCTTTTTCAG
ATGGGACTTCAGTTCTCTAAAGAAAACCTTCTGATTGCAACTTTAATATC
AATCCTTTAAAGGGACCCTCAATTTATTTCTTAAGCCTTACTAAGACTAA
GGCCTGGGTCACCAACAACTTGTGTTCGTGTCATTTACAGCCCCAAAATG
TGATTTGGTCGGTCGCTTCTTGGCATATCTTTAACCATCTGAAAAATGTG
CTCTCAATATAGGCAGTCGAGCTGTGTTAAAATCATCAACAAGATGCACT
CTGAGCAAAGGTTTGTTCAGGTGACAAGAATCATCTGTAATGCAATTATT
TTGCATATCGTCGCGACCGCTCAAAAAGCATTAGTGCCTTTTAACACAAA
AAATCTTCAGAAAATTGTGGATAGAAATCTTAAAAACACTCAATGATCAA
AACGCTGGCTATGCTGCATCTACAAAATTATTTTAATAATATCGCCCTTT
CCGACTAGAAAAGGGTCAGATTTTTAAGATAAAAAGTGAGTCGGTCGGAG
GACGCAAACACAACTTATTTGTCACCGTGGCCTAAGAATTTAAAAATTGG
TGAAGTGATTGCACAAATGTACTTCATGAAAGTTAAAGTGCCATAAATGA
AGTTTTCAAACAGCAGTTGATAAAAAAAACCTCTCTTCCCCCTTCCTCTT
CAAAACAGTTGAAATTGAACTAGATACTAGATGTGGCTGTTTCTGTTCGG
AGGTCAAATTAATAAAGCCTTTGTTAGAATACAATAGCTATTTATAAGAA
CGAAGGAAATGTTTGGTTTTTGTTCACTTTAGGCATGTTGAGTGACTTCA
AGATTGACCCCTTTCCCCGCCATTTTGTCAGTCTGGGAAATCCTCTCTTA
TGTTAGGGTGGTCAGAGGAAATTTCAAACTTACTTGCAGAATACCAAAAC
AAGTTTAATGGAAAGCCATAACCATCAGAAGAAAAATGAGGGGNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGAA
CGTGGTACGTCTCAAAAGCTAAACTATTGCGGGGAACGATGCAAAAAATT
CCAGGTCGATAGCTGTTTCGGGTGGCTAGCGCTTTGGATTTTAAAACCCC
CGGATAAAATATTTTGCCGTGCCGCGAACAAAAAGTTTGAAAAAACTCAC
CCGCGAGTACTCATTTTCAAATTTTGAAGGAACATGAAGACATGATGTGC
TGACTTTTTCTGCAAAAGAAAGCTGAATAAATTCTCTACACTTTGGAAAA
AATAGTTATGTTAAAAGAGATTTCCTTCCTTGAGATATGTAAGCTTGAAT
ATTTTTTTTCGAAAATCTATGTTTTGTTACTGCCGCACGCGTAAGGCCCG
ACCTCGTTCCGAGGGCGTAAGCGCCTAATTGCATGGTTATAATTTACGCC
CGCTCCCTAGGGGTTCAGAATTCTCTAATTCGGGCGAAGGCATGGTTTAA
CGGGCAATCCATTTTTACGGAATCTTCTTCTACGATAAATTTTGAGTAAA
ACTGCCCTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGTAAAACTGCCCTAGGCTTTTGAAATTCAACAG
AGCTTTCGGAAGGAATTGCGTGTCAAAAATATAAGAAATTTTAAAGCGTG
CAATTGCACGCTTACCGCGAAAGCCGTCACCCGTCAACTTACTTGCTTAA
CGCTTACCGCCGCCCGTTTCAGAACAAATTTCGATACGCGTGTATAAAAA
TTCTGCCATTTTGATAACTGTACGGCCTCGGAACATAAGCGTGCAATTGA
GAGGATTTCCCAGACTTTGTGTCTTTGTCCTGGGTCCGTCCTGGGTCCTC
AAGTAACTCATATCGTGCATTCTGATTGGTCAAAAAACAAAAGTGGATTT
TGTGTGTGTGAATTGCGTGTTTTCATTGGGCGAGATAAACTATTTCAGAT
TATTTTGACGCGCTGCTGCAGGAAACATATTTAATAAAATCAACAGTATT
CAATATGATTAAAGGTAATTGAAAAGTAATCCAAATGATTGACTCTTTTC
TATCAAGTTTTACCAGATAACAATTTTAATTGTTAATTCTACATGCATAT
ATTAGTCGCGCTGCTGAGGTCGATAAATGTTTCATTTCGTGACACACCTC
TTAGATTCCACTTTTTTCGATGGAAACTCAAATTAGTATATGTAGATTCC
AAAATCAAAAAGTTTCCACGATATTATCGTGCAAGTAACGAGTAAATGGC
AATTTTTTGCGTTTCCAGGCAAAATTGCAAGGCCTGGAAATTCATGATTT
TTGGGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTGGGCCTATTTGTGGTCAAAAAGGTGTTTAATTTTGCATAAATT
GATGCAGATTGTGGGGAAATTCCCTGTTTTCCATCAGTTTTTTACCACAA
ATAGGCCAATAACTTAGAGCTCTATCATGTGATATAGGTCTTTTTTTAAT
TTGGAGACCCCCCAAAAATCATGAATTTCCAGGCCTTGCAATTTTGCCTG
GAAACGCAAAAAATCGCCATTTACTCGTTACTTGCACGATAATATCGTGG
AAACTTTTTGATTTTGGAATCTACATATACTAATTTGAGAGTTTCCATCG
AAAAAAGTGGAATCTAAGAGGTGTATATCACGAAAATCATTTTCTAGCCA
CTTTTTTCGACCTCAGCCGCGCGACTATATGTTTGCTTGAAACAAAATGA
AAGNTTTACACATGAGCTGCATTTCAGTCTCCATTAACATGATTCCATAA
TCAACTTATTTGAAATAATTATGTGTCGAGTTTGACAAACGACAAACCAA
GCCACCAATCGCCAAACGAGACGGATCCAGATATAACCATTTTCACGCGT
AANGTTGAAAACGAGCGTGCAAAACAGCAAATGTATGACCCTGTTGACAT
GGATCAAAGTGAAGACAGGGAAAATTTTTCCAAAATCACCGCTGTTCTTC
TCATCGGTTAGACGCTTGAAATTTTATTGAATGGTCTCCTACCAATNTTT
TAGTGTCCATTACCAAATTCCAGAATCAGTTTACTTGAAATAATTATGTG
TTGAGTTTGAAAATCATACCACGTCCCACCACTGACCACTGCACCGTGGT
TTTGTTAACAGCCTGAACAGCGACAGATCCAGAAGTGATTGTTTTCTTAT
GTAGCATCAAGAAAAAAGTTCCAATCTTATTCAATTTTACACATCAGCTG
CATTTCAGTTTATTTATTTCTATATCAGAAGCCATTATTTCCTAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTCATTAAAATACAACTACG
CAGCTCCGCTCGCAGCTCTACTCTACCATTTTTGTTTTGATTTAATTTTG
TATTTTAATGACCAGCCAGGTCTTTCATTTAAAGGGCTATGCATGTTAGC
CTACACTGATGCAAGTTATCCAATCTCACGTACCTAATAGCTGGGGGGTT
TGGAATAAGCGGGGGGAGGTTGGAAAAAATATCAAAACTTACTAAGCAGG
GGGGGGGTTTGGAATAAAAATGTCCTAGGTCGAAAATTTCCATAAATTAT
GCGCGCCCATAGAAAAATATTTTTAAAAACCCGCGAATATATAGTGAGTG
GGCGCTCTTTAACCAATTAGGTGCACTCACATATTCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAATTGTTTTGAAGGAGCGCGGAATCAG
AAAATATATTTTTTATAGCCAGTATCCGACTTTAGCAAGCTTTTCCCTCT
CCAGACGGCAAAATTAAAAAGTGCGGTACTGGTTTTAAGCGCTGTTTCTG
CCTAAAGTGACACACGGACAACGGACAGACAGAAAATTGCAAATGAAAGG
CCTACGCTTAGCGCTGGGCCAATAAAGCAAATCCAACTAATGTTAATCCC
TTTATTTATTTTTACACTTTTTAAGTGATTTTTGACTTGTAAGTGGTCAT
AGCTTTCGATTAAAATCTATGCTGAAGATAGTAAAATTTTCGAAATTTGT
TGACATCATCTTTTTCAATATTTTTTGCAATTTCTTTAATTTACATTGTA
TCTATCACATTTCAACATTTGAATATTAATAAATAATAGTTTAGAAGTTA
CCAGTATTTTCAAATCTTTTTGCAAATTTAGCTTGGTTTTATGTCAAGTT
TCATAATAAAGTCAAGAAACCTGATCTAGAGGACCTTTGACCCCAAAATA
AATTTGCACAAGTACTCTTAATAGTTTTACTAAAAGTCAGAAAGTTTTTT
ATCGTTTCAGAAAACTTAAGATTAACCTTACATCTCACTTTGATAGCTAA
AAACATTGACAAACATCCCAAATTATTTTTTTCTTAATTTTAAAGTTTTT
GATATGTCACCACGTCGCTAGACAAAATGATGTCGGAGATTTTAGTACTG
ACCCCCGGGCTCGAATAACCAATTCCCAATGTTTAAAAGTATTCATAATT
GCTACTGCTAATGATATTTATCTTACACCATAGGTTCTTGCAGATAACCC
AGTTGATGGAGTACCACGTCAACTTTTCTCATTCGCCCAGCTTACTTTGA
CCTCTCTCAAGATTAACATCCCTCCTGGTGCAAGAAGTGGAGCCATTCGC
AAGCAATTAGAAAAAGATGACATCAAGGGAAAATGGGGTGCTACTGCTTA
TGCTAAAAAGTTAGCCTTACGAGAAGCAAAACGAAACATGAATGATTTTG
ACAGATACAAATCTAAAGTTGCAAAACAAGTTGTAAGTACATTTCATGTA
ATCATTCCAATTTGAGACGTTGGCAGTCAGCAAACTAATGGAAAGAAAGT
ATGCTGGTGCTTTTTTCTCGGACATTTATAAAGAAACTTCACTGATTGAG
GCTTAAGTTAAAGGACAGGGGTTAACACTGGTTAACAGTGACTATAAATT
TGTTTGCATGTGTCGACGATAAATGCATTTGAGTTACCTTAACCCTATTT
TTATCAGGGGTTGGTGTTTTCCACCAGGCTGGCACTCTTTTGGTTATAAC
TCATTGAAAAAAATGTTAAACACTCTGAAAGTTTTTGACTTTTAATATTA
TCTTATTAGCGGCATATATACCAAATTTTACAATTATACACCGACCAGAT
CAGGTTTTAGGACTTTTTGTGCAAGCATAGCATAAAATCCAGCCAACGGA
TTAGAATAGGTGGATTAAGAACTCATAGAAAACACTCCTCGTTAGGTTAT
CAAACTTTTTTACGAGTTTGCTAGCAATTAAAACTTGATAAGTTGTAAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTGCGCA
GAGTCATTTACAGATTTTTCTTGTAACAATGAGAAGACAATGGATCTCTC
TTGGGAGCAACGAGAGAAGTTAATCCACCTATTCTAATCCGTTGATCCAG
CTAAAACACTGTAAAATCACAAAATCTTAAATTTAGCATAACTTTTGATA
TAGGCATCCAACTGACTTTAAATTTTGAAAAATGACGTCATTGTTTTTTG
AAAATATTTACTCATCTTTTGCATGGATTTTAAACGTCCATTTTGTTAGT
ATGTTAAAAATGTAAAAGATTTTCTTTTTTGCTTTCAGAAATTCAAAACA
GAAATGAAAAATCTCCATTTGTTCAACTTTAATTATTATTTTATTAAATG
GTACTTTTTCACTGGTCAGTGATAATTGTGAAATTTTGTGATGACGTCAT
CACCTTTATGATTACGTCATCAACCCAAATTATTTTCTATGAATTCCTTA
TATGGTAGAGAACATTTCTGCCAAGTTTCAAGTCCACAGCTTTTCTAGAT
CAAAAGTTATGCAAGGCTGGTGGAAAACACAACCCCCCCCCCTTGAGAAT
ACGAAACACAAAAAAGCCTGATAATAATAGGGTTAAGAGTATCATCATTC
TCTACATATTTGAATGTTTCGTTTTGGTTTTGAACTGACTACCGAATTTC
CCTCACATGGCATGGGCTAAACAATTTGTTTTGATGTTTGTGGTGCATTT
TAAGAGTTGTTAAAAGTTCAGGCACGTTAAAGCTAATGAGCAGTAGATTT
CGGTAACTGTCGTTCCCAAGTGCCAATATCATCAAAAGGAAGGATAAATG
CATATGAGATTGATGTTCTTTATCTGCTGGAAGCCTCCTTACATCCAAAT
TGATGAACATTTTCCGTGACAAGTTCTGAAATATGTGCTATGATGATTAA
TAACCTTAGGACACCTTCGGAGATCAGATTGATCTATGAGAGTGATTATG
GTAACTGAAGCATTTATGTCTAAAACTTATATAAAATGTGTGCTGTTGTC
TTTCTCTCGATCGTTTATTATTGGGCTTTCTGATTCAGGCACGTTAAAGC
TAATGAGCAGTAGATTTCGGTAACTGTCCATTCGTTCCCAAGTGCCAATA
TCATCAAAAGGAAGGATAAATGCATATGAGATTGAAATTCTCTATCTGCT
GGAAGCCTCCTTACATCCATCCAACTTGATAATAATTGTTCGTTACAGCT
CTGAAATATGTGCTATGATGATTAATAACCTTAGGACACCTTCGGAGATC
AGATTGGTCTATGAGAGTGATTATGGTAACTGAAGCATTTATGTCTAAAA
CTTAAATAAAATGTGTGCTGTTGTCTTTCTCTCGATCGTTTATTATTGGG
CTTTCTGATTCAGGCACGTTAAAGCTAATGAGCAGAAGTTTTCAGTAACT
GTCCATTCGTTCCCAAGTGCCAATATTATCAAAAGGAAGGATAAATGCAT
ATGAGATTGAAATTCTCTATCTGCTGGAAGCCTCCTTACATCCAAATTGA
TGAACATTTTCCGTGACAAGTTCTGAAATATGTGCTATGATGATTAATAA
CCTTAGGACACCTTCGGAGATCAGATTGATCTATGAGAGTGATTATGGTA
ACTGAAGCATTTATGTCTAAAACTTATATAAAATGTGTGCTGTTGTCTTT
CTCTCGATCGTTTATTATTGGGCTTTCTGATTCAGGCACGTTAAAGCTAA
TGAGCAGTAGATTTCGGTAACTGTCCATTCGTTCCCAAGTGCCAATATCA
TCAAAAGGAAGGATAAATGCATATGAGATTGAAATTCTCTATCTGCTGGA
AGCCTCCTTACATCCATCCAACTTGATAATAATTGTTCGTTACAGCTCTG
AAATATGTGCTATGATGATTAATAACCTTAGGACACCTTCGGAGATCAGA
TTGGTCTATGAGAGTGATTATGGTAACTGAAGCATCTATGTCTAAAACTT
ACATAAAATGTGTGCTGTTGTCTTTCGCTCGATCATTTATTATTGGGCTT
TCTGATTCAGGCACGTTAAAGCTAATGAGCAGAAGTTTTCAGTAACTGTC
CATTCGTTCCCAAGTGCCAATATCATCAAAAGGAAGGATAAATGCATATG
AGATTGATGTTCTTTATCTGCTGGAAGCCTCCTTACATTTTTTCCTCGGA
GCTTTTCTAGTATTTTCAGAATCTGTCTACTTCTGAGTTGGATGAGTACG
ATATACTTTGTTTAAATGTGTTAAGTGATGATTAGTAACCTTAGGACACC
TTCGGAGATCAGATTGATCTGTGAGAAGAATTATGGTAACTGATAACACA
ATTTCGTTCAACCATGCGTCTACCAACTCTTTAATTATGTTGTTTTAAGG
ATTAAGAACTTTTTAATCAATCGGGGTTGTCTTCAATGAAGTATAAGCCC
GAGGGGCTAGAAGTCAATCTCCCTGGTAGGATTTAAAGCCAACAAATCCT
ACCAAAGTTGCGCGGCCTTGAGCGGCTCNNNNNNNNNNNNNNNNNNNNNN
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AAGGTTTCTAGACGACTAAAATTGTTCCATTCATTACTTTTTGCTTTATT
TCTACTATGTATAAATTAGTCGTCTAGCTTGCTAGACTACACAAATGGCA
GATTGAAACTGAAATTTACCGCTAAATTTCGAAAAAAATATTAATAGTAA
ACAAAGGAATTTCTAGATTCAATCTGTCGTCAAAAATGCGGCGCATTTTT
TAAGGCTTCACTTTTTCTTGCCTGATAAAGGTTAGAGATTGAACTCTATA
GCTTAAACTCAATGGTTGTCTTGTCGTGTCGTGTCGTGATTTACAAAATC
AGTCTAAATTATTATTTTTTTCTTCCTTTTTTTCAGAGAAATCGCAAGGT
GAAGGCCATCGTCAAGACTTTGAAGAAGAAATAAATATTGAAACCTTACA
TTTGAGAATCTATGTTTTTTCTCCATATCTTCTCTGCTATTGAAGGGTTA
AGTTTTGGGATGTTTAGT

Coding sequence (CDS) from alignment at sc0000130:504456..519973-

>TCONS_00011593 ID=TCONS_00011593|Name=TCONS_00011593|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000130:504456..519973- (Clytia hemisphaerica)
AGAAATCGCAAGGTGAAGGCCATCGTCAAGACTTTGAAGAAGAAATAAGT
TCTTGCAGATAACCCAGTTGATGGAGTACCACGTCAACTTTTCTCATTCG
CCCAGCTTACTTTGACCTCTCTCAAGATTAACATCCCTCCTGGTGCAAGA
AGTGGAGCCATTCGCAAGCAATTAGAAAAAGATGACATCAAGGGAAAATG
GGGTGCTACTGCTTATGCTAAAAAGTTAGCCTTACGAGAAGCAAAACGAA
ACATGAATGATTTTGACAGATACAAATCTAAAGTTGCAAAACAAGTTGGT
TTCACCAAGTTTGTAGAAGCCGGACGTGTGACACTTGTCAATGGAGGAAA
ATACGATGGAAAACTTGTTGTCATCGCCAATGTAGTTAATCAGTCAAGAA
TGAGAAATCGCAAGGTGAAGGCCATCGTCAAGACTTTGAAGAAGAAATAA
GTTCTTGCAGATAACCCAGTTGATGGAGTACCACGTCAACTTTTCTCATT
CGCCCAGCTTACTTTGACCTCTCTCAAGATTAACATCCCTCCTGGTGCAA
GAAGTGGAGCCATTCGCAAGCAATTAGAAAAAGATGACATCAAGGGAAAA
TGGGGTGCTACTGCTTATGCTAAAAAGTTAGCCTTACGAGAAGCAAAACG
AAACATGAATGATTTTGACAGATACAAATCTAAAGTTGCAAAACAAGTTG
GTTTCACCAAGTTTGTAGAAGCCGGACGTGTGACACTTGTCAATGGAGGA
AAATACGATGGAAAACTTGTTGTCATCGCCAATGTAGTTAATCAGTCAAG
AATGAGAAATCGCAAGGTGAAGGCCATCGTCAAGACTTTGAAGAAGAAAT
AAGTTCTTGCAGATAACCCAGTTGATGGAGTACCACGTCAACTTTTCTCA
TTCGCCCAGCTTACTTTGACCTCTCTCAAGATTAACATCCCTCCTGGTGC
AAGAAGTGGAGCCATTCGCAAGCAATTAGAAAAAGATGACATCAAGGGAA
AATGGGGTGCTACTGCTTATGCTAAAAAGTTAGCCTTACGAGAAGCAAAA
CGAAACATGAATGATTTTGACAGATACAAATCTAAAGTTGCAAAACAAGT
TGGTTTCACCAAGTTTGTAGAAGCCGGACGTGTGACACTTGTCAATGGAG
GAAAATACGATGGAAAACTTGTTGTCATCGCCAATGTAGTTAATCAGTCA
AGAATGAGAAATCGCAAGGTGAAGGCCATCGTCAAGACTTTGAAGAAGAA
ATAAGTTCTTGCAGATAACCCAGTTGATGGAGTACCACGTCAACTTTTCT
CATTCGCCCAGCTTACTTTGACCTCTCTCAAGATTAACATCCCTCCTGGT
GCAAGAAGTGGAGCCATTCGCAAGCAATTAGAAAAAGATGACATCAAGGG
AAAATGGGGTGCTACTGCTTATGCTAAAAAGTTAGCCTTACGAGAAGCAA
AACGAAACATGAATGATTTTGACAGATACAAATCTAAAGTTGCAAAACAA
GTTGGTTTCACCAAGTTTGTAGAAGCCGGACGTGTGACACTTGTCAATGG
AGGAAAATACGATGGAAAACTTGTTGTCATCGCCAATGTAGTTAATCAGT
CAAGAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006493	XLOC_006493	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011593-exon-sc0000130-1575043694:518940..519973	TCONS_00011593-exon-sc0000130-1575043694:518940..519973	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1575043694:518683..518784	TCONS_00011593-exon-sc0000130-1575043694:518683..518784	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1575043694:511992..512240	TCONS_00011593-exon-sc0000130-1575043694:511992..512240	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1575043694:504456..504587	TCONS_00011593-exon-sc0000130-1575043694:504456..504587	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1510915933:518940..519973	TCONS_00011593-exon-sc0000130-1510915933:518940..519973	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1510915933:518683..518784	TCONS_00011593-exon-sc0000130-1510915933:518683..518784	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1510915933:511992..512240	TCONS_00011593-exon-sc0000130-1510915933:511992..512240	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1510915933:504456..504587	TCONS_00011593-exon-sc0000130-1510915933:504456..504587	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1491911889:518940..519973	TCONS_00011593-exon-sc0000130-1491911889:518940..519973	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1491911889:518683..518784	TCONS_00011593-exon-sc0000130-1491911889:518683..518784	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1491911889:511992..512240	TCONS_00011593-exon-sc0000130-1491911889:511992..512240	Clytia hemisphaerica	exon
TCONS_00011593-exon-sc0000130-1491911889:504456..504587	TCONS_00011593-exon-sc0000130-1491911889:504456..504587	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011593-protein	TCONS_00011593-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000130	supercontig	sc0000130:504456..519973 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
728.155	709.135	819.047	899.754	519.775	417.305	623.418	649.259	925.292	790.968	935.066	1130.56	1242.08	1265.11	1153.9	1161.89	1280.15	1298.66	650.346	708.363	1256.41	1216.52	959.677	890.612	872.892	924.301	1205.54	1120.69	802.686	805.836

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002784	Ribosomal_L14e_dom
IPR014722	Rib_L2_dom2
IPR008991	Translation_prot_SH3-like

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Blast

[Close]

BLAST of TCONS_00011593 vs. Swiss-Prot (Human)
Match: RL14 (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 4.842e-26
Identity = 54/121 (44.63%), Postives = 71/121 (58.68%), Query Frame = 3

Query: 1032 MGFTKFVEAGRVTLVNGGKYDGKLVVIANVVNQSRVLADNPVDGVPRQLFSFAQLTLTSLKINIPPGARSGAIRKQLEKDDIKGKWGATAYAKKLALREAKRNMNDFDRYKSKVAKQVRNR 1394
            M F +FVE GRV  V+ G + GKLV I +V++Q+R L D P   V RQ   F  + LT   +  P  A    +R+  +K DI  KW AT +AKK+  RE K  M DFDR+K   AK++RNR
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNR 121

The following BLAST results are available for this feature:

BLAST of TCONS_00011593 vs. Swiss-Prot (Human)

BLAST of TCONS_00011593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RL14	4.842e-26	44.63	60S ribosomal protein L14 OS=Homo sapiens GN=RPL14...	[more]

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TCONS_00011593 (transcript) - C. hemisphaerica