TCONS_00011595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011595
Unique NameTCONS_00011595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011595 ID=TCONS_00011595|Name=TCONS_00011595|organism=Clytia hemisphaerica|type=transcript|length=1632bp
CTCAACAGAAAAGACACCAAAAGCCACGCAGTTGAACAAAATGAGAGATT
TGAAGCTCGTTTTCCTTTTCCATCTCGGCGCCTTGTTAATAGAAGTGACG
TCGGGACAGGGTCTAATGAACATTTTATCAAATACAAATACCGCACCCAA
TGCACTTGAAGTTAACGATAATGTTGCGATAAAGTTGAGTCAGCTGGCCC
CTAGAACTTCtctaaaacaacaaaaaagaagatCTGGCAGGCGAGCATTG
AAGAATAAAAAAGCGAACACCGAACCACCGATCGTTGAGAGCAATATGGA
TGAGTCATTGATTGTTGAATCTTTGAATGTTAACAAACAGCCAGCTTCCA
CAACCAACACCAAAAGCATTGATGAAAACACCAGCATCAGAGAGAGGATC
GCTCAAACCGATAAACAAGTCGATCAGATTGCAAAAGAAGTTCGTGGATA
CAAAGCTCAAATCAATTCACCGACACCAATATTCAACGAAGATTTTATCA
ACCTCACCGTAAACAAACTAAAAGAACGGaaaaagaaactcaaagaaTTT
GCCGCAACAATCGAAGAATGGCTAGATATATACCAAAACAACCAAGCCAT
CGTCAACATGATAAAAGCACTCTTGAAGAAAGTGAAAGCACTTTGTAAAC
AGATTGAAGAACAGATTGACCAATGGGAGTGCTTGCTGAAGAAAAAAACC
TTGCTGAAAGAGATCGAACTTTTGGAGAATAAATACAAACAGTTTTATGA
TcagtttaaaaatatcaaagatgCTTGCCaacaaaaagaatTCAACAAGA
ATTGTATCGAAGCTTACCTCAAAATGAAGGGAACTTTGACCAAGTTCCAA
CAGGAGATCAAACAGAAGATCGAAAAGTTGCTTAGTAGGAAGTGTTTGAC
GGATAAACAGAAAGTTCCTTGTTATCAACGTCTGTTGAAACTCCAATCAA
AAGTGTCTGGGTTGATCGAAGAACTTGGAAATTGTCTGAAACAAATGTTT
GTCGACAAAATTGGTGCGATCAACAAAATCAGAAACGATCTGTACAACAA
AATTTCGTTGGCCAAATTGAAAGTAGAAGGGTCATCCAACAAAAAACTGA
TCCTTGAAGCCATCAATAATCTCAAAAAGTATCACGAAGAACTTCAAAAG
CTGAAAGAAGAATTGGAAATTGTGATCGattgtttcaataaaattgcaaa
atgtctgACACCTGAAGATTACGAAAAATGTAAGCATGCTTTGGATGATC
TGAGGATGGAATTGAAAGGATTGTGTAAGCTCGTTCAAGACTGTTTGGAG
AACTTACAAAAACTGTTGACGATTCTTCCTTTGCAGCAAGAtatgaacaa
aaagaaaaaggagatCGAAAAACTGCAACAACAATACAACGTCCTCTTTA
CAGGTGAAATAAACATCTTCTTTTTCATACCGTTTCTCATGCCTTATATT
TAACCAGGTTAGAAAATCTGACTAAACTGAACTAAAACTTCTTCAACTAT
CATTATTTCTAGCAAACCTGAAAACTGTCAGCCTCGGAAATTCTCTTGAT
GATACCAACAACTATACCTCTCATTGTTTTCCAATTTATAAAAACACCAT
TATATTTCTCTAGGTCTAACATTCAATTgcac
Run BLAST on NCBI

transcript from alignment at sc0000130:540706..543791-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011595 ID=TCONS_00011595|Name=TCONS_00011595|organism=Clytia hemisphaerica|type=transcript|length=3086bp|location=Sequence derived from alignment at sc0000130:540706..543791- (Clytia hemisphaerica)
CTCAACAGAAAAGACACCAAAAGCCACGCAGTTGAACAAAATGAGAGATT
TGAAGCTCGTTTTCCTTTTCCATCTCGGCGCCTTGTTAATAGAAGTGACG
TCGGGACAGGGTCTAATGAACATTTTATCAAATACAAATACCGCACCCAA
TGCACTTGAAGTTAACGATAATGTTGCGATAAAGTTGAGTCAGCTGGCCC
CTAGAACTTCTCTAAAACAACAAAAAAGAAGATCTGGCAGGCGAGCATTG
AAGAATAAAAAAGCGAACACCGAACCACCGATCGTTGAGAGCAATATGGA
TGAGTCATTGATTGTTGAATCTTTGAATGTTAACAAACAGCCAGCTTCCA
CAACCAACACCAAAAGCATTGATGAAAACACCAGCATCAGAGAGAGGATC
GCTCAAACCGATAAACAAGTCGATCAGATTGCAAAAGAAGTTCGTGGATA
CAAAGCTCAAATCAGTAAGTTATCCTTCAGTTATCCTTCTCCTTAGCACA
GGTACTGTGTTTTCTAAAATTGCTCATCCGGCTTCTAAGAAAAGAAACTC
AGTTTTGTGGGCAGAAAATTTCCTTGATTCTTACGCATAAGGTGTGAAAG
AAATTCTCTCCATTAACCAGCGAAGTAAACTAACGTATCATGTTCCTCCA
CAGATTCACCGACACCAATATTCAACGAAGATTTTATCAACCTCACCGTA
AACAAACTAAAAGAACGGAAAAAGAAACTCAAAGAATTTGCCGCAACAAT
CGAAGAATGGCTAGATATATACCAAAACAACCAAGCCATCGTCAACATGA
TAAAAGCACTCTTGAAGAAAGTGAAAGCACTTTGTAAACAGATTGAAGAA
CAGATTGACCAATGGGAGTGCTTGCTGAAGAAAAAAACCTTGCTGAAAGA
GATCGAACTTTTGGAGAATAAATACAAACAGTTTTATGATCAGTTTAAAA
ATATCAAAGATGCTTGCCAACAAAAAGGTAAAAAGATATCGATTTCCTCA
GGGTTTCTGAGTATTATCTCGAGACTCTCTCGTTCCCAGTGTGAAGATCT
TTGATGTTTTTTTGACTTTTAGAATTCAACAAGAATTGTATCGAAGCTTA
CCTCAAAATGAAGGGAACTTTGACCAAGTTCCAACAGGAGATCAAACAGA
AGATCGAAAAGTTGCTTAGTAGGAAGTGTTTGACGGATAAACAGAAAGTT
CCTTGTTATCAACGTCTGTTGAAACTCCAATCAAAAGTGTCTGGGTTGAT
CGAAGAACTTGGAAATTGTCTGAAACAAATGTTTGTCGACAAAATTGGTG
CGATCAACAAAATCAGAAACGATCTGTACAACAAAATTTCGTTGGCCAAA
TTGAAAGTAGAAGGTAAGACCATACACCCCTGTCTCTCTAACAAAATTAT
ACACCCCTGTCTCTGTGACATTCTACCCTTGCCTCTCTAATACTATAAAT
CCTGTCTCTCTAACACCATACACCCCTGTCTCTCTAACACTACACCCCTG
CCTCTCTGACACCATACACCCCTGTCTCTCTAATACTATAACTCCTGTCT
CTCTAATACTATACACCCCTGTCTCTCTAACACTACACCCCTGCCTCTCT
AACACCATACACCCCTGTCTCTCTAATACTATAACTCCTGTCTCTCTAAT
ACTATACACCCCTGTCTCTCTAACACTACACCCCTGCCTCTCTAACACCA
TACGCCACTGTCTCTAACATCATACACCCCTGTCTCTCTAATACTATAAC
TCCTGTCTCTCTAATACTATACACCCCTGTCTCTCTAACACTACACCCCT
GCCTCTCTAACACCATACGCCACTGTCTCTAACATCATACACCCCTGTCT
CTCTAATACTATAACTCCTGTCTCTCTAATACTATACACCCCTGTCTCTC
TAACACTACACCCCTGCCTCTCTAACACCATACACCCCTGTCTCTCTAAT
ACTATAACTCCTGTCTCTCTAATACTATAACTCCTGACTCTTCAACACTA
CACCCCTGTCTCTCTAATACTATAACCCCTGCCTCTCTAACACCATACGC
CCCTTCTCTAGCACCATACATTCCTGTCTCTCTAACACTATACACCCCTG
CCTCTTTAACACTATACACCGTTGCCTCTCTAACACTATACACCCCTGTC
TCTCTAACATAGTACACCCCTGCCTCTCTAACACCATACGCCACTGTCTC
TCTAACATAGTACACCCCTGTCTCTCTAATACTATAACTCCTGTCTCTAT
AATACTATAAATCCTGACTCTCTAACACTACACCCCTGTCTCTCTAACAT
AGTACACCCCTGTCTCTATAATACTTTACACTCCTGCCTCTCTAACATCG
TACAACTTTATCTCTGTAATACTATACAGAAAAAAAATCAGTTCACCATC
TTTCAGGAAAAAATAGTAGCTCTGGTGAAAGAGCCAACGCTTCCATAATA
CTCAGCTATATAACATTCTTGTAACAACGACGATCTTCTCCGTAAATGTA
TTAATGTTCGATTGTATTATTTTTCGCTAACAGGGTCATCCAACAAAAAA
CTGATCCTTGAAGCCATCAATAATCTCAAAAAGTATCACGAAGAACTTCA
AAAGCTGAAAGAAGAATTGGAAATTGTGATCGATTGTTTCAATAAAATTG
CAAAATGTCTGACACCTGAAGATTACGAAAAATGTAAGCATGCTTTGGAT
GATCTGAGGATGGAATTGAAAGGATTGTGTAAGCTCGTTCAAGACTGTTT
GGAGAACTTACAAAAACTGTTGACGATTCTTCCTTTGCAGCAAGATATGA
ACAAAAAGAAAAAGGAGATCGAAAAACTGCAACAACAATACAACGTCCTC
TTTACAGGTGAAATAAACATCTTCTTTTTCATACCGTTTCTCATGCCTTA
TATTTAACCAGGTTAGAAAATCTGACTAAACTGAACTAAAACTTCTTCAA
CTATCATTATTTCTAGCAAACCTGAAAACTGTCAGCCTCGGAAATTCTCT
TGATGATACCAACAACTATACCTCTCATTGTTTTCCAATTTATAAAAACA
CCATTATATTTCTCTAGGTCTAACATTCAATTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006494XLOC_006494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011595-exon-sc0000130-1575043694:543328..543791TCONS_00011595-exon-sc0000130-1575043694:543328..543791Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1575043694:542815..543138TCONS_00011595-exon-sc0000130-1575043694:542815..543138Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1575043694:542429..542719TCONS_00011595-exon-sc0000130-1575043694:542429..542719Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1575043694:540706..541258TCONS_00011595-exon-sc0000130-1575043694:540706..541258Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1510915933:543328..543791TCONS_00011595-exon-sc0000130-1510915933:543328..543791Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1510915933:542815..543138TCONS_00011595-exon-sc0000130-1510915933:542815..543138Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1510915933:542429..542719TCONS_00011595-exon-sc0000130-1510915933:542429..542719Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1510915933:540706..541258TCONS_00011595-exon-sc0000130-1510915933:540706..541258Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1491911889:543328..543791TCONS_00011595-exon-sc0000130-1491911889:543328..543791Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1491911889:542815..543138TCONS_00011595-exon-sc0000130-1491911889:542815..543138Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1491911889:542429..542719TCONS_00011595-exon-sc0000130-1491911889:542429..542719Clytia hemisphaericaexon
TCONS_00011595-exon-sc0000130-1491911889:540706..541258TCONS_00011595-exon-sc0000130-1491911889:540706..541258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:540706..543791 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.141144	0.0552351	0	0.106273	0	0	0.0630283	0	0.0252591	0.0332087	0	0	0.042471	0	0	0	0	0	0.120527	0.0705464	0.343034	0	0.080304	0.0477796	0.0683725	0	0	0.0281936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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