TCONS_00011671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011671
Unique NameTCONS_00011671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011671 ID=TCONS_00011671|Name=TCONS_00011671|organism=Clytia hemisphaerica|type=transcript|length=421bp
ACACAAATGTTTTTTAGGAAGTTTATATTTAGATAAAGAAAACAATACAA
ATCGAATGATTTGTAAGCAAAATATATACTGCACAAGAGATAAGGGTTTA
CGTAAAtctatgagaaatattttagaaatcaaaattgtcGAAGCCCATCT
TTCAGTCAATCGACAACATCAAGGAACCAGTGTTAGTCGCTCGCTCacaa
aactttttctttaacAGCAGGTTGGTCGTGTTGATCTTTTTTCGCGCTTA
ACCCATGAACATGTTGTGTGTACTGGCCTTGTGTGTTACCAGCGGGTAAA
TATCTGGAAACGACGTAAGTTCCACCTGTTCCTTTAGCAACACCGCAACC
CAATTTAGTTGAAGAATCCCAAACTAATTGTGTGAAATGGCCAATAACTC
CACCGTTTGACTTCCCAGATG
Run BLAST on NCBI

transcript from alignment at sc0000131:136357..143096-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011671 ID=TCONS_00011671|Name=TCONS_00011671|organism=Clytia hemisphaerica|type=transcript|length=6740bp|location=Sequence derived from alignment at sc0000131:136357..143096- (Clytia hemisphaerica)
ACACAAATGTTTTTTAGGAAGTTTATATTTAGATAAAGAAAACAATACAA
ATCGAATGATTTGTAAGCAAAATATATACTGCACAAGAGATAAGGGTTTA
CGTAAATCTATGAGAAATATTTTAGAAATCAAAATTGTCGAAGCCCATCT
TTCAGTCAATCGACAACATCAAGGAACCAGTGTTAGTCGCTCGCTCACAA
AACTTTTTCTTTAACAGCAGGTTGGTCGTGTTGATCTTTTTTCGCGCTTA
ACCCATGAACATGTTGTGTGTACTGGCCTTGTGTGTTACCAGCGGGTAAA
TATCTGGAAACGACGTAAGTTCCACCTGTTCCTTTAGCAACACCGCAACC
CAATTTAGTTGAAGAATCCCAAACTAATTGTGTGAAATGGCCAATANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGGGGGGGGGTTGGAATAAAAATGTGCTGGGTGGAAAACT
TTTTGAAAAGGTGGCTAATACAGCAGAATTAGGACAAAAAAGGGAACTTT
TAGAAACATTTTCCAAAAAATCAATAAGCGGGGAGGTTGGAATAAGAATG
CCCTGGGTGGAAAAATTTCGAAAAATTAATTAGCAGGGGCGGGGGCGGCT
ATTAGGTACCCGAGAGTAGGCTTTCTCATTTTTAACTGTCGAGACAGATT
CAATTCTATAATTATAAGAAATTTCCAACAGCAGCCTCAAGCCTTGTTGA
AATATCCACTTTGTTAATTTTCTTTCTACAACATCTTTTATAGAAGAATA
CCTGTGGTTTCAGAATTCTGCTTGGAATGATATACAACTTGAAGGCAAAG
ATTTATTATACACTGGATAAACGACTCATAAAACGATGGAGAGCGATCAT
TGTATTTTCATTGTTTCAGAAAACAATTGATGTTCTAGCTTTGTCCGCAA
AGGACAACTGTCATGGTGGCTCGAAGATGTCTGATTTTTAAAAGTGTTTA
TCAGTCTTATTTAAAAAAAAGTTCTCTAGCTCTTCCATTTTGTACATTTG
CAGAAAAAAAGTTTGAAAGTAAGGCTAGAATACCAAGCCTGATACATTTG
TGAAAACTGGTGTGAGAGAATCATCATTAGACAAGAAATTCAGACAAAAT
GCTTATAGTGACACACAATTTTCAATTGGAAATATCTTTCCAAGACTGTC
CCCAGAAGAGCTGAAATTAACATACATAAGACTTGAATGTCTTAGCTCCA
CTGTGGTATGAAAATCCTTTCTAGGCACGCGGTGGCAAGGTGTTTTTTTA
TAGGTTGAAGTTTGAAAATTTCTGGTGTCAACATTCAATTTCTTATACAC
AACACGTCTTTTGCATCTTTCTCACAGCTTGAAACGTCATAACGACTTGT
AATTAGCAGTTAAGTGAAAGAATCTGACTCTCGCAGGAAGTCTCTTTTGG
GAATTGGATGAGTGATTTTCAAAAAGAAATGCAATAAAAATGCTTCGAAA
AATCGTTTAATGAGGGAAGGAGAGTGAACAACAATAATATCATTACTGCG
GACATAGCTACACACGAGAAATCTACAAAAATCTGCTACTTGTATATCCA
GTGTATAATAAATCTTTGTTGAAGGCATTTGAAATACATTTGAAACTTAG
CCCTCAGAAGCCTCTCAAAGACAAACTTTCGAAAAAATTCCACCGTACCA
ATTAAAAACCTTGACTGAGATATTTTTTGTTATTTTCTTACCATGAGACA
ACAGCATTAGTAGAGGTTCGACTTGCTGAAGATGACCAGTAAAGATTTTC
ACCGACTCCAGATTCGTAGCCATTGTATGTTCGAAAAGCATCGTGTTTCC
ACTCGTCGAATTCCAGGAGATATTCTGCGTAGGTTTGAGCACGTTTCGCG
AGATCCATGTCATAAGTCATTGAGGGTGTGTTTCTGTGGAGTCCTCGTTT
TGCATTGTGAGCTGCCAAGCAAGTTGCTTTTAGATAAACAAGAGAAAAAC
GATACATAACTGTAGCTTAACAAACATTTAATCACAGGCTATAAAACATG
TCTGGTAACTTCTTTACTATAATTTTTTGTTCATTTATCGCCACTCAAAC
GAGATTCAATTTTTTACCAGCTTTCAGGATTGAAATTCGCTTTCCAAAAC
TTGGAAGTCTTGAAGTCTTACCTTTGATGCTTTCCATCTCTGAGCTTGAA
ATTTTCGGTTCAGCTGTCACATAAGCTATGAAAAAAAAGTATTGAATATT
TATCCCATTTTTGTAGCTAAGTCTAACTGGTCTACATTGAGTCTTAACGA
TAACGAATGTTCTCAAAACAACTGCCTTGCAACAAAGCATGATGGTTAAA
TTTTATTTTGGAGATTTATAAAAAGTCTAAAGGGAGGTTCTACTACTGAT
ATATTGATTTCGATTATATCTTACCAGGAGCTGGGTCTGGTGAGCAATCA
CCGCATGTTTTCCGACACCAATCCGTCTTCACAAAACTGTGACTTTCACA
ATATTGACGCAAAGAAGTTGGACAATTTGAATATTTATCCTTGCAGCCTA
AAATATAGACGTTCGTTATTTTGGTATCGGCTCAAAGAAAATGAGAGAGA
ATAGACTTGACACCAAGTGGTTAGCTGTAGTTCAGAATGTAGAAAAACAT
CCCTCTGTCTCAGTGACCCGGTGCTGTAACAACTCTTTTGCTAATTGAGA
CAGAATGAGGATGTTAAATGCAATGTGAATGGGAAATTGCCAGTTTTCAA
TGAATTTGGATTATATAACATGTATAAATGTTGTTATACCTCAAAAATAC
CGCTCGTTTTCTTAAAATACAATGTCTCTTTGGGAATACTAGTAATGATA
AAAATAAAGAATGAAAATACGGGATTTTTAGGGTTTGCTTTGCATAACGA
AAATCTTACTGTACAAAATATTTAAAAGGACTCACTCAATTCATCATGGT
ACATTTCTTCAACATATTGTGCATCTTCTTCGGGCATTGGTCCATCATAA
CCTTGCAAAGAATTATGGGTATATCATTATGGGTTCAAGTGTCAAAAATA
TGCGTCTCATGAAAATTTCAAAGAATGATGACTTTGGAAGGTGTAAAATG
AAAAAGCCGTTAAAAGTAGTAAAAGAACGGCAAGTTTTACTTACTTGGTA
ATGTGTTGACCTTTTTGTGATCTTGGTGTGAACGTTTGACATGTTTACCT
TTAAAAATCAATAGAAAACTTTGAAAGTTACGCTTCGATTTTCGCGTTTA
TTTTTTATTCGGTCTTCATAGTTAATGAACCTTAAATCAAATCATAATCA
CTTTGGCTTGTTTGCGTACAATACGTGGCTTACAGGTAAACTTCGGCACA
CTTAAGGACTCTGATCATAGTAAGAAATTAAGGGATTTTTCTTTTACAAA
AGTTGTTTATTATTCATCCTGTCAAGAGTAATTAAGAACTTTAAGAATTT
AGTTACAATAATGACGTTATGGACATGTTTTTTTTTGACTGTACCAAAAT
TAGGTTTTCGAAAATCGTGAAAATCACTTTATTTTAATTATTTCGTCATT
CGCATGATGAATTTTCCCAAGATTTTGATATGTATTGAAATTTGAGAAGG
GCTTTAAAATGAGCTATTTGAAATTTCAAAATTCGGAGTATTTCAGGATT
AATTAATCATGGAGTGTTTTGGATCATATCTCACTCCATGACTCATTATT
CGGTCCTGAGGAGGTTTCTATGCATTCCTGAGGTAGCCTAAAATCATAAA
ATAGCCTGAGGAGTAATTTTTTTAAAGGTCGGAGTGAGTTATGATCAAAA
CAATCATCACGACTTTTTTAATCATTTTTCACTCATTTTAACAATTCCCT
TTTTCTTCAGTTCGTTCCTTTCTTTCAACTAAACAAAAATCTCAAATCAC
CTCCTCGATAGATAGACTTGTCAGGAAAATATATACGATTAGGATTAGCA
CCTAGATTTCAAAAATGATCAATTTGATCCCATTTTCCTCCGGTTTTTTC
CAAAAAAAAGAGGTCGATGTGAAAATTCAATCCTTTAGCTACACCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAC
ACCCTGATATAAGTTTCGTATATAAATTGGACACGACAAAAGCCAAATAT
AGAGCCGACTTTATAAATCCGAAATAGACTATGATTTTTTTCATCCTGGA
ATACTCCGGATTCAACAAGCGATATCTTAAGTTCCATAAAAGCTATTAAG
ATTGGACAAAAAGTATCGGACAGAGCTACTAATATATTTTCTTATTTTTG
AATAGCGATAAGAAAGGGTTCAGCTGTCTCTGTTAGTGCCGATTTGAACC
GGGTTGATTGAAAATCGGTATTTTGGTACAGTCAAAAAAAAACATGTCCT
TATGAACTTTAAAAAGACGTTAATAAAATGTTATGTTACCCTCTTCATCA
AAAAGTGCTAAGTTTTATTGGTCATTTAACCTTTTTGGTTCGAACATATT
TTAAGTTGTCCGCAAAGAATTGAACTATTTGAAAATTTTCAAATAAAAAA
CGATTTTGAGGCAAAGAAGCTTTTACTAAAATTTTCCGAAAATCTCTTTT
TAGTTTGGTTAAAGACACACCTTCTAACGCAAAAAAATTTTCGAAATGTT
TTTTCTTCGCCGAAAATAAGGTCCTCAAAGGTTGAAATATAATTCTTCGC
ATAAGTCTTCATTTTCTTCTCCATCAAAATTTTTCATTATGACTTTTAAA
TTTTCAGATTCAGGAAGAGTTGGCCTAACAGAAAATGTTTAAAATACCAT
AGTTTTGTTGGTTACATTTAAACCTTTAGTAGTGACACAGAAATCAACGA
AATAGGAGGCAATTTCATGCAAAAATCCTAACCAAAACAATAACCAGGTT
ACACGGAAAATTCGGGTCAAAGAAGCTTCAAAAAGTTAAAGTTTCGATGA
AATTGCAAAATGACATAAGAAAACTCACCTTGAGTGACTGTAGCAATTGC
AATGACTAAGATAAGAAAAAGCTTCATCTTGACTTCTTCCCTTCTCCTCT
TTACTAAAAACTCAGCTTAGAAAGACACTCTACTTCCTCTGTACCACTTC
CTTTTATACTCTCTTTCTTGACACGTTCTATAGAACCAGATGAAGACATA
CCACACCCTTTTCAATGTCTTTGATTGTAATACAAAATATATTACTTTAA
TCGCTCGGTGAAAGGTAATCGTGGATACAGATGGTTAAAATCTCTTATAG
TGGAAGATAATTCTTTCCTTATAAGGTAAATGGATAAGGTTCAAAGCAGC
TCTCCACCTTTGCGTTCAAATACGTGACGTGTAAATGTTTGAGGTGGCTC
AGCGGTGCTGCTAAATCATGCTACCTTTCTTTTGTCTCACTTGAACAATT
CGTTTAACTGAGATATACTAATTAAAAATATGATACCTGTTTTTTTTTAA
TATAAAAATTCATCCAATAAAAACGATAAACTAATAACATACTTTTTATA
TCAGCTTGAGCTTTAAAAAACTACTTTAAAACACCACTAGACACAGTAGA
AAGGCGTGGCCTACAGATAATTGTTTGCCTGGTCGCGGGAAAACTTCTTT
GGACTGCCGTGGTTACAATGTTTCGTATTCCAAATAAATCTTTTTATCCA
CTACAGTACTCTGCTATTTGTAAATCTTATCTCCTCTCTCTCTCCTCTCC
TCCCTTATCCAACACTGATCCGCGTCTAGCTCCTTTATAAACGTCACTGT
CAAACACAGTAGGAAGTATATAATTTACGTCAAGGCTAAAAAGTTTTTGT
CTTTTCCATGAAAGCGGATCTTTCAAAATAACTATGGAGTAAACAAATAA
AACAAGTGAAAAGGAAGCAAAATATAAAAATAAATGCATGCAAAATTGAA
ATAGGGTATTGGGAGCATAGATTTATAAAGCCCAAAGGGCTAGATGTCAA
GCTTTTGCTGAAAAGTGTGCCCAGGTTAGGTAAGTAATCTTACCTAGGTC
AAGTGAAATTACAATAGAATTTCAGCGCTTGAACAATAAGAAGTTTCGCG
TGTTTTCGAAAACAATAGCAGCAATATTTTTTGCAACATTCACTTTTTTT
TTCTTGGAAACATCTAGACATCTAGCCCTTCGGGCTTTACAGAAATCTGT
GATGTTGCCAGCGGGTAAATATCTGGAAACGACGTAAGTTCCACCTATTC
CTCTAGCAACACCGCAACCCAACTTAGTTGAAGAATCCCAAACTAATTGT
GTCAAAAGACCAACAACTCCACCGTTTGACTTCCCAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006549XLOC_006549Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011671-exon-sc0000131-1575043694:142702..143096TCONS_00011671-exon-sc0000131-1575043694:142702..143096Clytia hemisphaericaexon
TCONS_00011671-exon-sc0000131-1575043694:136357..136382TCONS_00011671-exon-sc0000131-1575043694:136357..136382Clytia hemisphaericaexon
TCONS_00011671-exon-sc0000131-1510915933:142702..143096TCONS_00011671-exon-sc0000131-1510915933:142702..143096Clytia hemisphaericaexon
TCONS_00011671-exon-sc0000131-1510915933:136357..136382TCONS_00011671-exon-sc0000131-1510915933:136357..136382Clytia hemisphaericaexon
TCONS_00011671-exon-sc0000131-1491911889:142702..143096TCONS_00011671-exon-sc0000131-1491911889:142702..143096Clytia hemisphaericaexon
TCONS_00011671-exon-sc0000131-1491911889:136357..136382TCONS_00011671-exon-sc0000131-1491911889:136357..136382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:136357..143096 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.768943	1.14233	0.757919	1.43119	0.225678	0	0.215152	0.201423	7.21594	6.80928	2.77266	5.01019	0.373303	0.628922	0.160273	0.659956	79.3748	103.298	1.77361	2.13275	59.043	58.0868	131.215	176.429	93.7526	136.302	19.8922	19.7662	0.371486	0.445145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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