TCONS_00011827 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011827
Unique NameTCONS_00011827
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011827 ID=TCONS_00011827|Name=TCONS_00011827|organism=Clytia hemisphaerica|type=transcript|length=1939bp
ATTTGTTTCTCCATAGCAAAATAATATTATTATTAAAAGTataaatataa
aagaatatGGATGTCGATTTGTAGTGTCAGAAAGTGAAAATGCAGCAGTC
AACACTAGGTATTGAAAAAAGAGAGCACCAGACAGGAAGCGTTCACCACC
TGGATGTTGAGCCTGTTCTTTTCcataacaaaaagaaacaaaagaaagac
caACTATTACAAGATCGTTCAAGCGTTCACAATGATGATGATACTCTACG
AATGATCGATAATGAACTGGCAAAAGCTATGTTACCAGACGCTGAGGTGA
GAATCTGTGGATGCAAAGAAGGTACATTTCGTATCATCAGTGGTTTGATC
TTGGTCGTCCTGATCGCCGTCTCATGGACCGGTTTCACGCAATTCGGACG
TAGTGTATACGACAAGGACTTCAAATCGCCGTACTTCACCGCTTGGTTTT
CTATCTGTTTTCAAGTTTCAATGTATCCTATATTCATGGTGCCACTCATG
TGTCAGAAAACTCCGTTCCGAATTCGAACTTTCTTGAGACAAACAGCAGA
AATATTCGGTACCAGGGGGTTTTGTTTACGGAGCGTGGTCGTCTTCTTGC
TCCGCTATTCCATTCCGTTCACTGCGATCAACTTAATGTGGAATTATTTC
TATTATCGATCATTGAAAGAACTGAATGCAGGTGTAGTGGCGACAGTATT
TGCATCTCAAAGCACCTTTGTTTATATCTTATCActgatatttttgaaag
ataAATTCTTCATATTGAGGATGAGCTCGGTATTATTATCACTGGGTGGT
ATCATATTGATGGGTCATGGCGAAGGTTTTGACAATCCTCACACCCTTGG
TATTCTATTTGCCGCCCTCGCCGCCTTAATGGCTGCTATTTATCAGGTTG
CATTCAAGCGTGTTTTAGGGCAAGCGACCAGCGGGCAAGTAGCTTTATTC
GTCACAGTCATCGGAATTACGAACTTACTATTTTTCGCACCTTTCATATT
CCTTTTACATTACGTTGGACTTGAAAAAATAGACTGGCATTTGTTACCTT
GGCTCGAATTGGCCGGTACGGCGGCCTTACAATTGGTGTTCCATTATTTG
GTGTCCTTTGGGATCGCTTTCACGTTTCCGCTGTTCATATCAATCGGTAT
TTTAATCAGTGTTCCGTTTAATGCGGTTGTAGATGCTATTTTCCGGAACG
AAAGTTTTGGCATTTCCAAGACAGTTGCATTTTTCTTGATTATTGTTGGT
TTTATGTTATTATTGATTCCGATCCGAAAAGTTGAACGTTTGGAACGGAA
ATGGTGTTGCGGAAACGGACACGGAACAGAAAAGGAGGAAGCTGCCAGTG
GACAGATGTTGGAAAGTGACGGGCTGTGAGACCATAGATGAAGGATATTC
TTTAGTGAATAATATGTGCATGGTTCAtgaacactgacctttatatatcc
ctggaccaagctatatccgcaatctttgatcgaagttttttaaAAGTTGG
CAGAAGCCATTGTAGTATTTGAAACTTTACCTaccgacaaacggcgctac
atcattagtATACAAGGGAAATAAGATCTAGTGTTCTCTCCGCCTGTctc
cgcgggtaccaatttaaaaaaaaactccgatcaaagattttgcttggccg
gcattgagtaacttggtccagggatatataaaggtcagtgttcaTGGCGC
TCAGTTGGAATGTGAAATGAAAAGGAATTTGTTCCGCTGTCGTGTTTAGT
TGGCTAATGCCAAATAGTATAATATaacctaaaaatgaaaatattgtgtT
ATCCATACAAGTCACCTAGAAAATGTACAGTGTACCACTGTTCCTTCGAA
AATTAATTCTGGATAACTAATTACATTCTggaattctgaaaaaaaactaa
attaaaggctttgtttttacataagtgttcccgtttcat
Run BLAST on NCBI

transcript from alignment at sc0000133:183880..191877+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011827 ID=TCONS_00011827|Name=TCONS_00011827|organism=Clytia hemisphaerica|type=transcript|length=7998bp|location=Sequence derived from alignment at sc0000133:183880..191877+ (Clytia hemisphaerica)
ATTTGTTTCTCCATAGCAAAATAATATTATTATTAAAAGTataaatataa
aagaatatGGATGTCGATTTGTAGTGTCAGAAAGTGAAAATGCAGCAGTC
AACACTAGGTAAGAAATGTTTCAATCATACATTCTCTCTGGTGGTTCAGT
ATCTAAAAAATTTCCTTGTTAAAGTTTTGTAATCTTTTGTCCTTGACAAT
AAAATTCTACAATTATCTGCGCGTGTGCATAATAGTCATTGGACCTACGG
TCTACTCATATAAAGATGCTTCACTGCTCAAAAATTctgttcaaaaatat
tttggtattttgtactttttttgatttttacattttaaattaCTAGTCTT
GAAGGAGAAAGAAATATCttgttgaaaatataattttgagtgTTTTCGAA
TTGTGATAATTTTTCTCTTCTTCATCTTGCATCTCCAtcttaatatttaa
aaaaaattcttcaagacACCTCATTCTACTCAAGATTATCTTTCCTTGGG
AAATTTACTACATAAAGTATTCTTGTGTTTATCTTGACTaaatgtttttt
atcttttcaatcaGGTATTGAAAAAAGAGAGCACCAGACAGGAAGCGTTC
ACCACCTGGATGTTGAGCCTGTTCTTTTCcataacaaaaagaaacaaaag
aaagaccaACTATTACAAGATCGTTCAAGCGTTCACAATGATGATGATAC
TCTACGAATGATCGATAATGAACTGGCAAAAGCTAGTAAGTACCAAGGAA
GTTTAATCTTTTATTTAAGTTTCTTGTAAGTACTGACTTAccatttttta
aatacagtTTTTTAAAACACTTTCAGTCCCATTGTTTATTGTCTTTGGGG
CACTGCtgcttttttaagttttactCTTGCactaaaatgttttttaatca
TGACACTCAGTAATTAGAGAACACATATAGGTTAGCCCAAGGGTAGCCAG
AAATGCTCGGAACCCCATTCAACTCTATGCAATCCCTCGAAACAATACGG
GTTAAATATTTCTGACTTAAATATATAGGTTATATGGTTAGTTTCGTAGG
AAGGTATCGCGTTGGAGGGCCTGTGTTGCCCATTTGTTTTAAGTGTCTAT
TAATGTTTGCTTTGCTTGTGAATTTTCAACCAATACTTCAAATCTAGCAA
ActatataccgttgaaaaggTAATTTAGAGTACTTCGAAACTTTGagaga
aatgaaaaagaaaaaaggaaactttttaTCTTTATGCGCGAGGAGCCTGC
TGCTTAGACGACTTGCGTCAAAAGTGACAGCCTCTAGAAAGTAGCTCGTT
GGAGTTGAAAAAATCTTCGGTGTGttttttgacgacatttttaGCCTAGC
GTAGAAcgatcttttcaacggtatataatTTGCTAGAATTAAAGCATTGG
TTGAAAATgacaagtaaaaagaaaatcagTGCACACTTAAAAAGAATGGA
CTTTTAGAACTTTTAGAACAACTTTTAGAAGACTTAACATTGAACTTGGA
GGGGGAGGTTAGCACAGTCgactctttctaattcgatctcaaaggaacca
aaaattatctttgaattagagaaatattcgaattaaagagagtaaTTTAT
ATCACTCTCCAGCCGacgggaccaatattttagttcgaattacagaaaga
ttcgaatgatgGATGTTCGAATTAGAGTGAGATGACTGTATTGGTTCATC
ATTCTATTGAAAACCtgtacaggggggtggacgaacctgcCAAAAAATTC
CCAGTTGTTCAAAGACCTTTTCACCTAGAAAAACTCCTACTTAACTCTCA
GTTATTTCGTCTGTAATCCATTCGCTAGGCTCATTACCGTCCGTCCTTGA
CGCTCGATTCCCAACATGATAGATACTTTAGTTGATGATCATATCTCGAA
TGATGACCTAGTCTTGGCCTCGttgaaagatattttcataTGTGACAAGT
CTAGTTAGTATCAGTTATTTTAAAATCATTCTCCTTATAGTGTTACCAGA
CGCTGAGGTGAGAATCTGTGGATGCAAAGAAGGTACATTTCGTATCATCA
GTGGTTTGATCTTGGTCGTCCTGATCGCCGTCTCATGGACCGGTTTCACG
CAATTCGGACGTAGTGTATACGACAAGGACTTCAAATCGCCGTACTTCAC
CGCTTGGTTTTCTATCTGTTTTCAAGTTTCAATGTATCCTATATTCATGG
TGCCACTCATGTGTCAGAAAACTCCGTTCCGAATTCGAACTTTCTTGAGG
TAATAGACTGAGTTTTTATTAAATTATGATATCTATCAACTCCTGTCTGA
TGtatttctttcatattttcatcGGTCCAGCTGATTTTAATAAAGGTTTT
AAAAAGGTCCTTGTTAGTTTTATTGCTATGCTATGAATTGCTTTATAAAG
TGAAAAATCTCAAAGATTTTTCATCAATATGTTCCTTGAAAACGTATCTT
GAGAACTTAATCAGGACTTTCCTTTTTCGGTTATCAAGGTTTCATAATTT
GACAATAAAGCAGCGAGATGCTTGATAAATGGAATCTTTTACCACCCNCC
tgtacaggggggtggacgaacctgcCAAAAAATTCCCAGTTGTTCAAAGA
CCTTTTCACCTAGAAAAACTCCTACTTAACTCTCAGTTATTTCGTCTGTA
ATCCATTCGCTAGGCTCATTACCGTCCGTCCTTGACGCTCGATTCCCAAC
ATGATAGATACTTTAGTTGATGATCATATCTCGAATGATGACCTAGTCTT
GGCCTCGttgaaagatattttcataTGTGACAAGTCTAGTTAGTATCAGT
TATTTTAAAATCATTCTCCTTATAGTGTTACCAGACGCTGAGGTGAGAAT
CTGTGGATGCAAAGAAGGTACATTTCGTATCATCAGTGGTTTGATCTTGG
TCGTCCTGATCGCCGTCTCATGGACCGGTTTCACGCAATTCGGACGTAGT
GTATACGACAAGGACTTCAAATCGCCGTACTTCACCGCTTGGTTTTCTAT
CTGTTTTCAAGTTTCAATGTATCCTATATTCATGGTGCCACTCATGTGTC
AGAAAACTCCGTTCCGAATTCGAACTTTCTTGAGGTAATAGACTGAGTTT
TTATTAAATTATGATATCTATCAACTCCTGTCTGATGtatttctttcata
ttttcatcGGTCCAGCTGATTTTAATAAAGGTTTTAAAAAGGTCCTTGTT
AGTTTTATTGCTATGCTATGAATTGCTTTATAAAGTGAAAAATCTCAAAG
ATTTTTCATCAATATGTTCCTTGAAAACGTATCTTGAGAACTTAATCAGG
ACTTTCCTTTTTCGGTTATCAAGGTTTCATAATTTGACAATAAAGCAGCG
AGATGCTTGATAAATGGAATCTTttaccaccccccccccccccccNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCcccccccccggtaattaggtcccccttTTTTATAAGGCACCTG
ACAATAACgattttttcattattattttctATACAGACAAACAGCAGAAA
TATTCGGTACCAGGGGGTTTTGTTTACGGAGCGTGGTCGTCTTCTTGCTC
CGCTATTCCATTCCGTTCACTGCGATCAACTTAATGTGGAATTATTTCTA
TTATCGATCATTGAAAGAACTGAATGCAGGTGTAGTGGCGACAGTATTTG
CATCTCAAAGCACCTTTGTTTATATCTTATCActgatatttttgaaagat
aAATTCTTCATATTGAGGGTAAGTAAAtaacgtcacgaacatcacttgcc
tcgtattcaaacaattaccatggtgatgaTGTCCCTTAAGacatgaaatg
atttttttatgaatagaaatgAGTAGTTTAtgagtagttttaataaaatt
ccgctgggagttaataaccatggcaataatttcaaaacgaaggtaagtga
tgttcgtaacgtaatttatgaaaagctcTATTCAGGGTCAACTTTTTGTC
GAACATTACGTTGAAATACGGAcatttaaaatttctaaaaggtGTCGTTT
TGAGATTTTGGAAAGAACTTCCATGTGATTGCGTTCTCGAAAATACGTCA
CAGGTCCTAAGGTTTGGGTCCCTTACTATGATAAGTTTGAAGAAAATCTA
TTTCGACGTAGATGAAACATTCTTTGATATTTTAGCATTGATTTTAACAA
GTCAAGATTTTAAAAGCCCTGTAACGCaataattcattttttcaaataac
AAGAAAGAGACTTTGATTTATTGTTTAGAACTTTAAGTTTTATGCCGCCC
GTATGACAATTATCAGCTAAAATCTTCATACAATATTCATTTCTTTCATT
CTTCAGATGAGCTCGGTATTATTATCACTGGGTGGTATCATATTGATGGG
TCATGGCGAAGGTTTTGACAATCCTCACACCCTTGGTATTCTATTTGCCG
CCCTCGCCGCCTTAATGGCTGCTATTTATCAGGTGAGAAGCGTCTTTTGa
tatgtatttttttgttttttaacctCGTGGAAGGTTTTTGCTagttttta
tttctgtttttttcttcCTATCAAAATGTGGATGTTGTTACAGTAAAGGC
TCGgagacacgagaagtttttttcgtcTTGGTTGCAattcaacatgctcc
atcccaccaacctgaaacgctttctcgcgtctccaccccatttttcattt
aaataacatttgtgcttctctcacttttgtcccaggaacaaaaaaagaaa
ccatgagtagggtagatcgtcaaatggcaaagtcaaaaaattcaaagtgt
agtatttttctgtgaaaatttaatctattgtaagacattttgcgcaattt
ttaacctcctaggtcaaaaatccagcattccccaggggggtctttgattc
gcactaaagcgaaaaatgaataaaaatggcattttttgcccattttaaga
ctataaaaggccaggaaagggtcaaaatgctttctaaatggtgtcttgta
ctaatattcaacacaaaaagacaaaataaccccagcgagatcgctcaatg
tttcaatttcaggctaaaaaggctgatttTCTCCgattctgggtagcaaa
atgcatgaagcagcatttttgaggacccacaacttttaaactttttaagg
tacacacttgaaattttcagtaatgaaacacttcagagaaagctccagga
aaaaccaattcaaaaatttcctataaatccataatggcgccctagaaatt
gagttttcatgctaaatgccaatattttaagctaaaacttgattttctca
ggctaaaatctcaaaaatggtttccaatggtgtcctgaaattttATGGTG
tagaaagtattctggaaatactttTGGAGGACCAAAatggctaaaatctc
aaaaatggtttcaaatggtgtcttGAAATTtttgggtgttgaaagtattc
tggaaaactctgggagaatcaaaatggtttgggttagaaatgtgccaaag
tctgccattatggaattgtatttcattctaaaacacaatgttTTAAGTAA
GTTTGAGTGTTCttcctaaagaaataaaattcataatggcagactttgcc
ATATATATGTCCATTGTGAACcactgtgattttccttgagtgttcccaga
atactttcaacaccaaaagatttcaggaccctatcgtatttgaaaccatt
tttgagattttagcctgagaaaattagactttaactctaaatatcacgtt
ttagtaggaaatgcaataccatattGGCAGACTCAAGCAAATTTCAAACG
CAAACtattttggttctcccagagtatatccagaatactttcaacaccaa
aaattttcagaaccctatttgaaaccatttttgagattttagcctgagaa
aatcagactttaactctaaatatcgcgttttaaatggaaatgcaattcca
tatGGCGGACTTtagcaaatttctaacccaaaccattttgattctcccag
agtttttccagaatactttcaacaccaaaaaatttcaggacaccattgga
aaccatttttgagattttagcctgagaaaaccaagttttagcttgaaata
ttggcttttagcatgaaaactcaatttccagggcgccattatggatttat
aggaaatttttgaaaactcaaatttgatttttcctggagctttctctgaa
gtgtttcattactgaaaatttcaagtgtgtaccttaaaaagtttaaaagt
tgtgggtcctgcGAAAAATGCTTCTCGTGTCGCCAAGCCTTAAGTCATCT
TTTGAATCTCTAATTCTGGAAGAGAGCCTAGAAGCTTGACTATAATTATG
ATATATTTTCAAAACCATGTCTAGCAGTATAACCtaatttttatgtattt
tatagGTTGCATTCAAGCGTGTTTTAGGGCAAGCGACCAGCGGGCAAGTA
GCTTTATTCGTCACAGTCATCGGAATTACGAACTTACTATTTTTCGCACC
TTTCATATTCCTTTTACATTACGTTGGACTTGAAAAAATAGACTGGCATT
TGTTACCTTGGCTCGAATTGGCCGGTACGGCGGCCTTACAATTGGTGTTC
CATTATTTGGTGTCCTTTGGGATCGCTTTCACGTTTCCGCTGTTCATATC
AATCGGTATTTTAATCAGTGTTCCGTTTAATGCGGTTGTAGATGCTATTT
TCCGGAACGAAAGTTTTGGCATTTCCAAGACAGTTGCATTTTTCTTGATT
ATTGTTGGTTTTATGTTATTATTGATTCCGATCCGAAAAGTTGAACGTTT
GGAACGGAAATGGTGTTGCGGAAACGGACACGGAACAGAAAAGGAGGAAG
CTGCCAGTGGACAGATGTTGGAAAGTGACGGGCTGTGAGACCATAGATGA
AGGATATTCTTTAGTGAATAATATGTGCATGGTTCAtgaacactgacctt
tatatatccctggaccaagctatatccgcaatctttgatcgaagtttttt
aaAAGTTGGCAGAAGCCATTGTAGTATTTGAAACTTTACCTaccgacaaa
cggcgctacatcattagtATACAAGGGAAATAAGATCTAGTGTTCTCTCC
GCCTGTctccgcgggtaccaatttaaaaaaaaactccgatcaaagatttt
gcttggccggcattgagtaacttggtccagggatatataaaggtcagtgt
tcaTGGCGCTCAGTTGGAATGTGAAATGAAAAGGAATTTGTTCCGCTGTC
GTGTTTAGTTGGCTAATGCCAAATAGTATAATATaacctaaaaatgaaaa
tattgtgtTATCCATACAAGTCACCTAGAAAATGTACAGTGTACCACTGT
TCCTTCGAAAATTAATTCTGGATAACTAATTACATTCTggaattctgaaa
aaaaactaaattaaaggctttgtttttacataagtgttcccgtttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006645XLOC_006645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011827-exon-sc0000133-1491911889:183880..183987TCONS_00011827-exon-sc0000133-1491911889:183880..183987Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1510915933:183880..183987TCONS_00011827-exon-sc0000133-1510915933:183880..183987Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1575043694:183880..183987TCONS_00011827-exon-sc0000133-1575043694:183880..183987Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1491911889:184444..184614TCONS_00011827-exon-sc0000133-1491911889:184444..184614Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1510915933:184444..184614TCONS_00011827-exon-sc0000133-1510915933:184444..184614Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1575043694:184444..184614TCONS_00011827-exon-sc0000133-1575043694:184444..184614Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1491911889:185870..186128TCONS_00011827-exon-sc0000133-1491911889:185870..186128Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1510915933:185870..186128TCONS_00011827-exon-sc0000133-1510915933:185870..186128Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1575043694:185870..186128TCONS_00011827-exon-sc0000133-1575043694:185870..186128Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1491911889:187966..188197TCONS_00011827-exon-sc0000133-1491911889:187966..188197Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1510915933:187966..188197TCONS_00011827-exon-sc0000133-1510915933:187966..188197Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1575043694:187966..188197TCONS_00011827-exon-sc0000133-1575043694:187966..188197Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1491911889:188786..188911TCONS_00011827-exon-sc0000133-1491911889:188786..188911Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1510915933:188786..188911TCONS_00011827-exon-sc0000133-1510915933:188786..188911Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1575043694:188786..188911TCONS_00011827-exon-sc0000133-1575043694:188786..188911Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1491911889:190835..191877TCONS_00011827-exon-sc0000133-1491911889:190835..191877Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1510915933:190835..191877TCONS_00011827-exon-sc0000133-1510915933:190835..191877Clytia hemisphaericaexon
TCONS_00011827-exon-sc0000133-1575043694:190835..191877TCONS_00011827-exon-sc0000133-1575043694:190835..191877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:183880..191877 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53989	3.60188	9.10647e-05	2.51765	3.42054	2.70757	6.18277	4.57103	3.20717	2.65429	2.57796	2.5389	2.52892	1.75174	3.76706	5.29907	1.90545	5.5426	2.70123	5.36055	2.45308	0.000236513	4.3386	3.96473	2.72759	3.62858	10.2955	9.03798	5.63841	2.87579
Blast
[Close]
BLAST of TCONS_00011827 vs. Swiss-Prot (Human)
Match: S35F4 (Solute carrier family 35 member F4 OS=Homo sapiens GN=SLC35F4 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.649e-40
Identity = 112/357 (31.37%), Postives = 195/357 (54.62%), Query Frame = 3 
Query:  216 RSSVHNDDDTLRMIDNELAKAMLPDAEVRICGCKEGTFRIISGLILVVLIAVSWTGFTQFGRSVYDKDFKSPYFTAWFSICFQVSMYPIF----MVPLMCQKTPFRIRTFLRQTAEIFGTRGFCLRSVVVFLLRYSIPFTAINLMWNYFYYRSLKELNAGVVATVFASQSTFVYILSLIFLKDKFFILRXXXXXXXXXXXXXXXHGEGFDNPHTLGIXXXXXXXXXXXIYQVAFKRVLGQATSGQVALFVTVIGITNLLFFAPFIFLLHYVGLEK-IDWHLLPWLELAGTAALQLVFHYLVSFGIAFTFPLFISIGILISVPFNAVVDAIFRNESFGISKTVAFFLIIVGFMLLLIP 1271
            R +   DD T    +N   +  +   + R   C     + I GL++++ ++ SW G TQ  +  Y K+F  P+F  WFS  + +  +P++    +     +++P +     R+ + IFG  G  L+      L+ + PF+ +  + NY Y  +LK+L A  V+ +F     FV++LS I LKD+F  +R+ + ++++ GI++M + + F     +G+ FA  +A  +A+Y+V FK  LG A  G+ A FV+ +G  NL+F +    +L++  +E    +  LPW  L G A L L F+ LV+ G+  T+P+ ISIG ++SVP NA VD + +   F + +  A  +I +GF+L+L+P
Sbjct:  128 RQNRSADDGTQTHSENSSQENRI---KARCLSCTSMVLKGIWGLLIILSVSSSWVGTTQIVKITY-KNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKK---FRECSRIFGEDGLTLK----LFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLP 473
The following BLAST results are available for this feature:
BLAST of TCONS_00011827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F41.649e-4031.37Solute carrier family 35 member F4 OS=Homo sapiens... [more]
back to top