TCONS_00011829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011829
Unique NameTCONS_00011829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011829 ID=TCONS_00011829|Name=TCONS_00011829|organism=Clytia hemisphaerica|type=transcript|length=1925bp
AGCAAAATAATATTATTATTAAAAGTataaatataaaagaatatGGATGT
CGATTTGTAGTGTCAGAAAGTGAAAATGCAGCAGTCAACACTAGGTATTG
AAAAAAGAGAGCACCAGACAGGAAGCGTTCACCACCTGGATGTTGAGCCT
GTTCTTTTCcataacaaaaagaaacaaaagaaagaccaACTATTACAAGA
TCGTTCAAGCGTTCACAATGATGATGATACTCTACGAATGATCGATAATG
AACTGGCAAAAGCTATGTTACCAGACGCTGAGGTGAGAATCTGTGGATGC
AAAGAAGGTACATTTCGTATCATCAGTGGTTTGATCTTGGTCGTCCTGAT
CGCCGTCTCATGGACCGGTTTCACGCAATTCGGACGTAGTGTATACGACA
AGGACTTCAAATCGCCGTACTTCACCGCTTGGTTTTCTATCTGTTTTCAA
GTTTCAATGTATCCTATATTCATGGTGCCACTCATGTGTCAGAAAACTCC
GTTCCGAATTCGAACTTTCTTGAGACAAACAGCAGAAATATTCGGTACCA
GGGGGTTTTGTTTACGGAGCGTGGTCGTCTTCTTGCTCCGCTATTCCATT
CCGTTCACTGCGATCAACTTAATGTGGAATTATTTCTATTATCGATCATT
GAAAGAACTGAATGCAGGTGTAGTGGCGACAGTATTTGCATCTCAAAGCA
CCTTTGTTTATATCTTATCActgatatttttgaaagataAATTCTTCATA
TTGAGGATGAGCTCGGTATTATTATCACTGGGTGGTATCATATTGATGGG
TCATGGCGAAGGTTTTGACAATCCTCACACCCTTGGTATTCTATTTGCCG
CCCTCGCCGCCTTAATGGCTGCTATTTATCAGGTTGCATTCAAGCGTGTT
TTAGGGCAAGCGACCAGCGGGCAAGTAGCTTTATTCGTCACAGTCATCGG
AATTACGAACTTACTATTTTTCGCACCTTTCATATTCCTTTTACATTACG
TTGGACTTGAAAAAATAGACTGGCATTTGTTACCTTGGCTCGAATTGGCC
GGTACGGCGGCCTTACAATTGGTGTTCCATTATTTGGTGTCCTTTGGGAT
CGCTTTCACGTTTCCGCTGTTCATATCAATCGGTATTTTAATCAGTGTTC
CGTTTAATGCGGTTGTAGATGCTATTTTCCGGAACGAAAGTTTTGGCATT
TCCAAGACAGTTGCATTTTTCTTGATTATTGTTGGTTTTATGTTATTATT
GATTCCGATCCGAAAAGTTGAACGTTTGGAACGGAAATGGTGTTGCGGAA
ACGGACACGGAACAGAAAAGGAGGAAGCTGCCAGTGGACAGATGTTGGAA
AGTGACGGGCTGTGAGACCATAGATGAAGGATATTCTTTAGTGAATAATA
TGTGCATGGTTCAtgaacactgacctttatatatccctggaccaagctat
atccgcaatctttgatcgaagttttttaaAAGTTGGCAGAAGCCATTGTA
GTATTTGAAACTTTACCTaccgacaaacggcgctacatcattagtATACA
AGGGAAATAAGATCTAGTGTTCTCTCCGCCTGTctccgcgggtaccaatt
taaaaaaaaactccgatcaaagattttgcttggccggcattgagtaactt
ggtccagggatatataaaggtcagtgttcaTGGCGCTCAGTTGGAATGTG
AAATGAAAAGGAATTTGTTCCGCTGTCGTGTTTAGTTGGCTAATGCCAAA
TAGTATAATATaacctaaaaatgaaaatattgtgtTATCCATACAAGTCA
CCTAGAAAATGTACAGTGTACCACTGTTCCTTCGAAAATTAATTCTGGAT
AACTAATTACATTCTggaattctgaaaaaaaactaaattaaaggctttgt
ttttacataagtgttcccgtttcat
Run BLAST on NCBI

protein sequence of TCONS_00011829-protein

>TCONS_00011829-protein ID=TCONS_00011829-protein|Name=TCONS_00011829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
MQQSTLGIEKREHQTGSVHHLDVEPVLFHNKKKQKKDQLLQDRSSVHNDD
DTLRMIDNELAKAMLPDAEVRICGCKEGTFRIISGLILVVLIAVSWTGFT
QFGRSVYDKDFKSPYFTAWFSICFQVSMYPIFMVPLMCQKTPFRIRTFLR
QTAEIFGTRGFCLRSVVVFLLRYSIPFTAINLMWNYFYYRSLKELNAGVV
ATVFASQSTFVYILSLIFLKDKFFILRMSSVLLSLGGIILMGHGEGFDNP
HTLGILFAALAALMAAIYQVAFKRVLGQATSGQVALFVTVIGITNLLFFA
PFIFLLHYVGLEKIDWHLLPWLELAGTAALQLVFHYLVSFGIAFTFPLFI
SIGILISVPFNAVVDAIFRNESFGISKTVAFFLIIVGFMLLLIPIRKVER
LERKWCCGNGHGTEKEEAASGQMLESDGL
Run BLAST on NCBI

transcript from alignment at sc0000133:183894..191877+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011829 ID=TCONS_00011829|Name=TCONS_00011829|organism=Clytia hemisphaerica|type=transcript|length=7984bp|location=Sequence derived from alignment at sc0000133:183894..191877+ (Clytia hemisphaerica)
AGCAAAATAATATTATTATTAAAAGTataaatataaaagaatatGGATGT
CGATTTGTAGTGTCAGAAAGTGAAAATGCAGCAGTCAACACTAGGTAAGA
AATGTTTCAATCATACATTCTCTCTGGTGGTTCAGTATCTAAAAAATTTC
CTTGTTAAAGTTTTGTAATCTTTTGTCCTTGACAATAAAATTCTACAATT
ATCTGCGCGTGTGCATAATAGTCATTGGACCTACGGTCTACTCATATAAA
GATGCTTCACTGCTCAAAAATTctgttcaaaaatattttggtattttgta
ctttttttgatttttacattttaaattaCTAGTCTTGAAGGAGAAAGAAA
TATCttgttgaaaatataattttgagtgTTTTCGAATTGTGATAATTTTT
CTCTTCTTCATCTTGCATCTCCAtcttaatatttaaaaaaaattcttcaa
gacACCTCATTCTACTCAAGATTATCTTTCCTTGGGAAATTTACTACATA
AAGTATTCTTGTGTTTATCTTGACTaaatgttttttatcttttcaatcaG
GTATTGAAAAAAGAGAGCACCAGACAGGAAGCGTTCACCACCTGGATGTT
GAGCCTGTTCTTTTCcataacaaaaagaaacaaaagaaagaccaACTATT
ACAAGATCGTTCAAGCGTTCACAATGATGATGATACTCTACGAATGATCG
ATAATGAACTGGCAAAAGCTAGTAAGTACCAAGGAAGTTTAATCTTTTAT
TTAAGTTTCTTGTAAGTACTGACTTAccattttttaaatacagtTTTTTA
AAACACTTTCAGTCCCATTGTTTATTGTCTTTGGGGCACTGCtgcttttt
taagttttactCTTGCactaaaatgttttttaatcaTGACACTCAGTAAT
TAGAGAACACATATAGGTTAGCCCAAGGGTAGCCAGAAATGCTCGGAACC
CCATTCAACTCTATGCAATCCCTCGAAACAATACGGGTTAAATATTTCTG
ACTTAAATATATAGGTTATATGGTTAGTTTCGTAGGAAGGTATCGCGTTG
GAGGGCCTGTGTTGCCCATTTGTTTTAAGTGTCTATTAATGTTTGCTTTG
CTTGTGAATTTTCAACCAATACTTCAAATCTAGCAAActatataccgttg
aaaaggTAATTTAGAGTACTTCGAAACTTTGagagaaatgaaaaagaaaa
aaggaaactttttaTCTTTATGCGCGAGGAGCCTGCTGCTTAGACGACTT
GCGTCAAAAGTGACAGCCTCTAGAAAGTAGCTCGTTGGAGTTGAAAAAAT
CTTCGGTGTGttttttgacgacatttttaGCCTAGCGTAGAAcgatcttt
tcaacggtatataatTTGCTAGAATTAAAGCATTGGTTGAAAATgacaag
taaaaagaaaatcagTGCACACTTAAAAAGAATGGACTTTTAGAACTTTT
AGAACAACTTTTAGAAGACTTAACATTGAACTTGGAGGGGGAGGTTAGCA
CAGTCgactctttctaattcgatctcaaaggaaccaaaaattatctttga
attagagaaatattcgaattaaagagagtaaTTTATATCACTCTCCAGCC
GacgggaccaatattttagttcgaattacagaaagattcgaatgatgGAT
GTTCGAATTAGAGTGAGATGACTGTATTGGTTCATCATTCTATTGAAAAC
CtgtacaggggggtggacgaacctgcCAAAAAATTCCCAGTTGTTCAAAG
ACCTTTTCACCTAGAAAAACTCCTACTTAACTCTCAGTTATTTCGTCTGT
AATCCATTCGCTAGGCTCATTACCGTCCGTCCTTGACGCTCGATTCCCAA
CATGATAGATACTTTAGTTGATGATCATATCTCGAATGATGACCTAGTCT
TGGCCTCGttgaaagatattttcataTGTGACAAGTCTAGTTAGTATCAG
TTATTTTAAAATCATTCTCCTTATAGTGTTACCAGACGCTGAGGTGAGAA
TCTGTGGATGCAAAGAAGGTACATTTCGTATCATCAGTGGTTTGATCTTG
GTCGTCCTGATCGCCGTCTCATGGACCGGTTTCACGCAATTCGGACGTAG
TGTATACGACAAGGACTTCAAATCGCCGTACTTCACCGCTTGGTTTTCTA
TCTGTTTTCAAGTTTCAATGTATCCTATATTCATGGTGCCACTCATGTGT
CAGAAAACTCCGTTCCGAATTCGAACTTTCTTGAGGTAATAGACTGAGTT
TTTATTAAATTATGATATCTATCAACTCCTGTCTGATGtatttctttcat
attttcatcGGTCCAGCTGATTTTAATAAAGGTTTTAAAAAGGTCCTTGT
TAGTTTTATTGCTATGCTATGAATTGCTTTATAAAGTGAAAAATCTCAAA
GATTTTTCATCAATATGTTCCTTGAAAACGTATCTTGAGAACTTAATCAG
GACTTTCCTTTTTCGGTTATCAAGGTTTCATAATTTGACAATAAAGCAGC
GAGATGCTTGATAAATGGAATCTTTTACCACCCNCCtgtacaggggggtg
gacgaacctgcCAAAAAATTCCCAGTTGTTCAAAGACCTTTTCACCTAGA
AAAACTCCTACTTAACTCTCAGTTATTTCGTCTGTAATCCATTCGCTAGG
CTCATTACCGTCCGTCCTTGACGCTCGATTCCCAACATGATAGATACTTT
AGTTGATGATCATATCTCGAATGATGACCTAGTCTTGGCCTCGttgaaag
atattttcataTGTGACAAGTCTAGTTAGTATCAGTTATTTTAAAATCAT
TCTCCTTATAGTGTTACCAGACGCTGAGGTGAGAATCTGTGGATGCAAAG
AAGGTACATTTCGTATCATCAGTGGTTTGATCTTGGTCGTCCTGATCGCC
GTCTCATGGACCGGTTTCACGCAATTCGGACGTAGTGTATACGACAAGGA
CTTCAAATCGCCGTACTTCACCGCTTGGTTTTCTATCTGTTTTCAAGTTT
CAATGTATCCTATATTCATGGTGCCACTCATGTGTCAGAAAACTCCGTTC
CGAATTCGAACTTTCTTGAGGTAATAGACTGAGTTTTTATTAAATTATGA
TATCTATCAACTCCTGTCTGATGtatttctttcatattttcatcGGTCCA
GCTGATTTTAATAAAGGTTTTAAAAAGGTCCTTGTTAGTTTTATTGCTAT
GCTATGAATTGCTTTATAAAGTGAAAAATCTCAAAGATTTTTCATCAATA
TGTTCCTTGAAAACGTATCTTGAGAACTTAATCAGGACTTTCCTTTTTCG
GTTATCAAGGTTTCATAATTTGACAATAAAGCAGCGAGATGCTTGATAAA
TGGAATCTTttaccaccccccccccccccccNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCccccccc
ccggtaattaggtcccccttTTTTATAAGGCACCTGACAATAACgatttt
ttcattattattttctATACAGACAAACAGCAGAAATATTCGGTACCAGG
GGGTTTTGTTTACGGAGCGTGGTCGTCTTCTTGCTCCGCTATTCCATTCC
GTTCACTGCGATCAACTTAATGTGGAATTATTTCTATTATCGATCATTGA
AAGAACTGAATGCAGGTGTAGTGGCGACAGTATTTGCATCTCAAAGCACC
TTTGTTTATATCTTATCActgatatttttgaaagataAATTCTTCATATT
GAGGGTAAGTAAAtaacgtcacgaacatcacttgcctcgtattcaaacaa
ttaccatggtgatgaTGTCCCTTAAGacatgaaatgatttttttatgaat
agaaatgAGTAGTTTAtgagtagttttaataaaattccgctgggagttaa
taaccatggcaataatttcaaaacgaaggtaagtgatgttcgtaacgtaa
tttatgaaaagctcTATTCAGGGTCAACTTTTTGTCGAACATTACGTTGA
AATACGGAcatttaaaatttctaaaaggtGTCGTTTTGAGATTTTGGAAA
GAACTTCCATGTGATTGCGTTCTCGAAAATACGTCACAGGTCCTAAGGTT
TGGGTCCCTTACTATGATAAGTTTGAAGAAAATCTATTTCGACGTAGATG
AAACATTCTTTGATATTTTAGCATTGATTTTAACAAGTCAAGATTTTAAA
AGCCCTGTAACGCaataattcattttttcaaataacAAGAAAGAGACTTT
GATTTATTGTTTAGAACTTTAAGTTTTATGCCGCCCGTATGACAATTATC
AGCTAAAATCTTCATACAATATTCATTTCTTTCATTCTTCAGATGAGCTC
GGTATTATTATCACTGGGTGGTATCATATTGATGGGTCATGGCGAAGGTT
TTGACAATCCTCACACCCTTGGTATTCTATTTGCCGCCCTCGCCGCCTTA
ATGGCTGCTATTTATCAGGTGAGAAGCGTCTTTTGatatgtatttttttg
ttttttaacctCGTGGAAGGTTTTTGCTagtttttatttctgtttttttc
ttcCTATCAAAATGTGGATGTTGTTACAGTAAAGGCTCGgagacacgaga
agtttttttcgtcTTGGTTGCAattcaacatgctccatcccaccaacctg
aaacgctttctcgcgtctccaccccatttttcatttaaataacatttgtg
cttctctcacttttgtcccaggaacaaaaaaagaaaccatgagtagggta
gatcgtcaaatggcaaagtcaaaaaattcaaagtgtagtatttttctgtg
aaaatttaatctattgtaagacattttgcgcaatttttaacctcctaggt
caaaaatccagcattccccaggggggtctttgattcgcactaaagcgaaa
aatgaataaaaatggcattttttgcccattttaagactataaaaggccag
gaaagggtcaaaatgctttctaaatggtgtcttgtactaatattcaacac
aaaaagacaaaataaccccagcgagatcgctcaatgtttcaatttcaggc
taaaaaggctgatttTCTCCgattctgggtagcaaaatgcatgaagcagc
atttttgaggacccacaacttttaaactttttaaggtacacacttgaaat
tttcagtaatgaaacacttcagagaaagctccaggaaaaaccaattcaaa
aatttcctataaatccataatggcgccctagaaattgagttttcatgcta
aatgccaatattttaagctaaaacttgattttctcaggctaaaatctcaa
aaatggtttccaatggtgtcctgaaattttATGGTGtagaaagtattctg
gaaatactttTGGAGGACCAAAatggctaaaatctcaaaaatggtttcaa
atggtgtcttGAAATTtttgggtgttgaaagtattctggaaaactctggg
agaatcaaaatggtttgggttagaaatgtgccaaagtctgccattatgga
attgtatttcattctaaaacacaatgttTTAAGTAAGTTTGAGTGTTCtt
cctaaagaaataaaattcataatggcagactttgccATATATATGTCCAT
TGTGAACcactgtgattttccttgagtgttcccagaatactttcaacacc
aaaagatttcaggaccctatcgtatttgaaaccatttttgagattttagc
ctgagaaaattagactttaactctaaatatcacgttttagtaggaaatgc
aataccatattGGCAGACTCAAGCAAATTTCAAACGCAAACtattttggt
tctcccagagtatatccagaatactttcaacaccaaaaattttcagaacc
ctatttgaaaccatttttgagattttagcctgagaaaatcagactttaac
tctaaatatcgcgttttaaatggaaatgcaattccatatGGCGGACTTta
gcaaatttctaacccaaaccattttgattctcccagagtttttccagaat
actttcaacaccaaaaaatttcaggacaccattggaaaccatttttgaga
ttttagcctgagaaaaccaagttttagcttgaaatattggcttttagcat
gaaaactcaatttccagggcgccattatggatttataggaaatttttgaa
aactcaaatttgatttttcctggagctttctctgaagtgtttcattactg
aaaatttcaagtgtgtaccttaaaaagtttaaaagttgtgggtcctgcGA
AAAATGCTTCTCGTGTCGCCAAGCCTTAAGTCATCTTTTGAATCTCTAAT
TCTGGAAGAGAGCCTAGAAGCTTGACTATAATTATGATATATTTTCAAAA
CCATGTCTAGCAGTATAACCtaatttttatgtattttatagGTTGCATTC
AAGCGTGTTTTAGGGCAAGCGACCAGCGGGCAAGTAGCTTTATTCGTCAC
AGTCATCGGAATTACGAACTTACTATTTTTCGCACCTTTCATATTCCTTT
TACATTACGTTGGACTTGAAAAAATAGACTGGCATTTGTTACCTTGGCTC
GAATTGGCCGGTACGGCGGCCTTACAATTGGTGTTCCATTATTTGGTGTC
CTTTGGGATCGCTTTCACGTTTCCGCTGTTCATATCAATCGGTATTTTAA
TCAGTGTTCCGTTTAATGCGGTTGTAGATGCTATTTTCCGGAACGAAAGT
TTTGGCATTTCCAAGACAGTTGCATTTTTCTTGATTATTGTTGGTTTTAT
GTTATTATTGATTCCGATCCGAAAAGTTGAACGTTTGGAACGGAAATGGT
GTTGCGGAAACGGACACGGAACAGAAAAGGAGGAAGCTGCCAGTGGACAG
ATGTTGGAAAGTGACGGGCTGTGAGACCATAGATGAAGGATATTCTTTAG
TGAATAATATGTGCATGGTTCAtgaacactgacctttatatatccctgga
ccaagctatatccgcaatctttgatcgaagttttttaaAAGTTGGCAGAA
GCCATTGTAGTATTTGAAACTTTACCTaccgacaaacggcgctacatcat
tagtATACAAGGGAAATAAGATCTAGTGTTCTCTCCGCCTGTctccgcgg
gtaccaatttaaaaaaaaactccgatcaaagattttgcttggccggcatt
gagtaacttggtccagggatatataaaggtcagtgttcaTGGCGCTCAGT
TGGAATGTGAAATGAAAAGGAATTTGTTCCGCTGTCGTGTTTAGTTGGCT
AATGCCAAATAGTATAATATaacctaaaaatgaaaatattgtgtTATCCA
TACAAGTCACCTAGAAAATGTACAGTGTACCACTGTTCCTTCGAAAATTA
ATTCTGGATAACTAATTACATTCTggaattctgaaaaaaaactaaattaa
aggctttgtttttacataagtgttcccgtttcat

Coding sequence (CDS) from alignment at sc0000133:183894..191877+

>TCONS_00011829 ID=TCONS_00011829|Name=TCONS_00011829|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0000133:183894..191877+ (Clytia hemisphaerica)
ATGCAGCAGTCAACACTAGGTATTGAAAAAAGAGAGCACCAGACAGGAAG
CGTTCACCACCTGGATGTTGAGCCTGTTCTTTTCcataacaaaaagaaac
aaaagaaagaccaACTATTACAAGATCGTTCAAGCGTTCACAATGATGAT
GATACTCTACGAATGATCGATAATGAACTGGCAAAAGCTATGTTACCAGA
CGCTGAGGTGAGAATCTGTGGATGCAAAGAAGGTACATTTCGTATCATCA
GTGGTTTGATCTTGGTCGTCCTGATCGCCGTCTCATGGACCGGTTTCACG
CAATTCGGACGTAGTGTATACGACAAGGACTTCAAATCGCCGTACTTCAC
CGCTTGGTTTTCTATCTGTTTTCAAGTTTCAATGTATCCTATATTCATGG
TGCCACTCATGTGTCAGAAAACTCCGTTCCGAATTCGAACTTTCTTGAGA
CAAACAGCAGAAATATTCGGTACCAGGGGGTTTTGTTTACGGAGCGTGGT
CGTCTTCTTGCTCCGCTATTCCATTCCGTTCACTGCGATCAACTTAATGT
GGAATTATTTCTATTATCGATCATTGAAAGAACTGAATGCAGGTGTAGTG
GCGACAGTATTTGCATCTCAAAGCACCTTTGTTTATATCTTATCActgat
atttttgaaagataAATTCTTCATATTGAGGATGAGCTCGGTATTATTAT
CACTGGGTGGTATCATATTGATGGGTCATGGCGAAGGTTTTGACAATCCT
CACACCCTTGGTATTCTATTTGCCGCCCTCGCCGCCTTAATGGCTGCTAT
TTATCAGGTTGCATTCAAGCGTGTTTTAGGGCAAGCGACCAGCGGGCAAG
TAGCTTTATTCGTCACAGTCATCGGAATTACGAACTTACTATTTTTCGCA
CCTTTCATATTCCTTTTACATTACGTTGGACTTGAAAAAATAGACTGGCA
TTTGTTACCTTGGCTCGAATTGGCCGGTACGGCGGCCTTACAATTGGTGT
TCCATTATTTGGTGTCCTTTGGGATCGCTTTCACGTTTCCGCTGTTCATA
TCAATCGGTATTTTAATCAGTGTTCCGTTTAATGCGGTTGTAGATGCTAT
TTTCCGGAACGAAAGTTTTGGCATTTCCAAGACAGTTGCATTTTTCTTGA
TTATTGTTGGTTTTATGTTATTATTGATTCCGATCCGAAAAGTTGAACGT
TTGGAACGGAAATGGTGTTGCGGAAACGGACACGGAACAGAAAAGGAGGA
AGCTGCCAGTGGACAGATGTTGGAAAGTGACGGGCTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006645XLOC_006645Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011829-proteinTCONS_00011829-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011829-exon-sc0000133-1491911889:183894..183987TCONS_00011829-exon-sc0000133-1491911889:183894..183987Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:183894..183987TCONS_00011829-exon-sc0000133-1510915933:183894..183987Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:183894..183987TCONS_00011829-exon-sc0000133-1575043694:183894..183987Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1491911889:184444..184614TCONS_00011829-exon-sc0000133-1491911889:184444..184614Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:184444..184614TCONS_00011829-exon-sc0000133-1510915933:184444..184614Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:184444..184614TCONS_00011829-exon-sc0000133-1575043694:184444..184614Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1491911889:185870..185911TCONS_00011829-exon-sc0000133-1491911889:185870..185911Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:185870..185911TCONS_00011829-exon-sc0000133-1510915933:185870..185911Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:185870..185911TCONS_00011829-exon-sc0000133-1575043694:185870..185911Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1491911889:186747..186963TCONS_00011829-exon-sc0000133-1491911889:186747..186963Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:186747..186963TCONS_00011829-exon-sc0000133-1510915933:186747..186963Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:186747..186963TCONS_00011829-exon-sc0000133-1575043694:186747..186963Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1491911889:187966..188197TCONS_00011829-exon-sc0000133-1491911889:187966..188197Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:187966..188197TCONS_00011829-exon-sc0000133-1510915933:187966..188197Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:187966..188197TCONS_00011829-exon-sc0000133-1575043694:187966..188197Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1491911889:188786..188911TCONS_00011829-exon-sc0000133-1491911889:188786..188911Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:188786..188911TCONS_00011829-exon-sc0000133-1510915933:188786..188911Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:188786..188911TCONS_00011829-exon-sc0000133-1575043694:188786..188911Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1491911889:190835..191877TCONS_00011829-exon-sc0000133-1491911889:190835..191877Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1510915933:190835..191877TCONS_00011829-exon-sc0000133-1510915933:190835..191877Clytia hemisphaericaexon
TCONS_00011829-exon-sc0000133-1575043694:190835..191877TCONS_00011829-exon-sc0000133-1575043694:190835..191877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:183894..191877 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.84277	1.32518	6.32252	0.280661	3.67852	4.12468	0.106074	4.18934	5.49201	10.2269	5.07318	4.23692	2.64214	2.94212	0.0264812	0.0101879	7.57536	0.130042	3.82172	0.000252731	3.00459	7.4058	3.1277	4.4085	5.19735	2.76779	5.24282	3.48492	9.51825	13.3794
Blast
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BLAST of TCONS_00011829 vs. Swiss-Prot (Human)
Match: S35F4 (Solute carrier family 35 member F4 OS=Homo sapiens GN=SLC35F4 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.602e-40
Identity = 112/357 (31.37%), Postives = 195/357 (54.62%), Query Frame = 1 
Query:  202 RSSVHNDDDTLRMIDNELAKAMLPDAEVRICGCKEGTFRIISGLILVVLIAVSWTGFTQFGRSVYDKDFKSPYFTAWFSICFQVSMYPIF----MVPLMCQKTPFRIRTFLRQTAEIFGTRGFCLRSVVVFLLRYSIPFTAINLMWNYFYYRSLKELNAGVVATVFASQSTFVYILSLIFLKDKFFILRXXXXXXXXXXXXXXXHGEGFDNPHTLGIXXXXXXXXXXXIYQVAFKRVLGQATSGQVALFVTVIGITNLLFFAPFIFLLHYVGLEK-IDWHLLPWLELAGTAALQLVFHYLVSFGIAFTFPLFISIGILISVPFNAVVDAIFRNESFGISKTVAFFLIIVGFMLLLIP 1257
            R +   DD T    +N   +  +   + R   C     + I GL++++ ++ SW G TQ  +  Y K+F  P+F  WFS  + +  +P++    +     +++P +     R+ + IFG  G  L+      L+ + PF+ +  + NY Y  +LK+L A  V+ +F     FV++LS I LKD+F  +R+ + ++++ GI++M + + F     +G+ FA  +A  +A+Y+V FK  LG A  G+ A FV+ +G  NL+F +    +L++  +E    +  LPW  L G A L L F+ LV+ G+  T+P+ ISIG ++SVP NA VD + +   F + +  A  +I +GF+L+L+P
Sbjct:  128 RQNRSADDGTQTHSENSSQENRI---KARCLSCTSMVLKGIWGLLIILSVSSSWVGTTQIVKITY-KNFYCPFFMTWFSTNWNIMFFPVYYSGHLATAQEKQSPMKK---FRECSRIFGEDGLTLK----LFLKRTAPFSILWTLTNYLYLLALKKLTATDVSALFCCNKAFVFLLSWIVLKDRFMGVRIVAAIMAITGIVMMAYADNFHADSIIGVAFAVGSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFISFTPVILYFTKVEHWSSFAALPWGCLCGMAGLWLAFNILVNVGVVLTYPILISIGTVLSVPGNAAVDLLKQEVIFNVVRLAATIIICIGFLLMLLP 473
The following BLAST results are available for this feature:
BLAST of TCONS_00011829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35F41.602e-4031.37Solute carrier family 35 member F4 OS=Homo sapiens... [more]
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