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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011884 ID=TCONS_00011884|Name=TCONS_00011884|organism=Clytia hemisphaerica|type=transcript|length=4051bpRun BLAST on NCBI protein sequence of TCONS_00011884-protein >TCONS_00011884-protein ID=TCONS_00011884-protein|Name=TCONS_00011884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1086bp MTDVDSTLVGNDTEIEEFVENERLLQSSELDEHTRIGEETKDALTEKIIERun BLAST on NCBI transcript from alignment at sc0000133:460884..509188- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011884 ID=TCONS_00011884|Name=TCONS_00011884|organism=Clytia hemisphaerica|type=transcript|length=48305bp|location=Sequence derived from alignment at sc0000133:460884..509188- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000133:460884..509188- >TCONS_00011884 ID=TCONS_00011884|Name=TCONS_00011884|organism=Clytia hemisphaerica|type=CDS|length=3261bp|location=Sequence derived from alignment at sc0000133:460884..509188- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011884 vs. Swiss-Prot (Human)
Match: RASEF (Ras and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF PE=1 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.165e-53 Identity = 172/614 (28.01%), Postives = 293/614 (47.72%), Query Frame = 3
Query: 1758 DPNTTKVFESFLGKVYNELRTARQETKHLENVLERKSQVHQEEMKKIYDEVEIQMQTEKLKQTQQLAEKETVLREDMLRELKEKEGQIEKMIQRENTLANRLSNVKEQE--QSLKHQNSKLMKENMQLEDQLNDSMSNLSYLKTNLQHMEEQTTAEKKETLKAAVQATQGIQSEHESLIKQLDLLRSMNQKLRDERDSLELSIRSKTSRLDDIDGIEDSIPAKKPISRHGSNI--GKYIQERSSSTPTHSPLSKQGSIMSNYFEPLGDHRHSSFS---ENLDA-----QLSRIGEGEVDT---SVFDSVIE-MDEPSSNEALIIDTHQQSVNN----EPDLGSQTXXXXXXXXXRQEPVGMNN-------DEEHFSDNISSVSHSTAPVETPS----------------RVYKCVFVGDSGVGKSSFIHRFCFDEFQKNFSATIGVDMHVKTIKVKRQWVALQLWDTAGQERFRSITKNYFRRADGVIVMFDVTSETSFLNVKGWMLNIEEGAEPDCQIMLLGNKKDLCDNHPKK-RKITP-EMAQTLADSFGATYYEVSALSGTGVLESIDHLATRMALNEDGLMQKSVIDIHKYCNAEGANGEK----KKCC 3452
+P + +E + E+R E ++L ++R ++ ++ +E++ ++Q + K + K D+ R+ + + G ++ I++ L + V ++E +LK Q L EN +++ L ++ +N+++L++ L ++ A++ + ++ + + SL +Q+++L++ N+KL D D L ++ + S+ + S H +NI G I S HSP +PLG R S S E+ D+ L R EVD+ S FDS + + +P+ ++ + HQ+ + G S + P +E G+ + + S VS S P+ S + YK V GD+ VGKSSF+ R C +EF++N SAT+GVD +KT+ V + LQLWDTAGQERFRSI K+YFR+ADGV++++DVT E SFLN++ W+ IE+ A IML+GNK D+ D + +K P + LA ++GA + E SA G+ ++E++ HLA + D +S+ N G N +K K CC
Sbjct: 159 EPRLIQPYEHVIKNFIREIRLQSTEMENLAIAVKRAQDKAAMQLSELEEEMDQRIQAAEHKTRKDEKRKAEEALSDLRRQYETEVGDLQVTIKKLRKLEEQSKRVSQKEDVAALKKQIYDLSMENQKVKKDLLEAQTNIAFLQSELDALKSDY-ADQSLNTERDLEIIRAYTEDRNSLERQIEILQTANRKLHDSNDGLRSALENSYSKFNR--------------SLHINNISPGNTISRSSPKFIGHSP------------QPLGYDRSSRSSYVDEDCDSLALCDPLQRTN-CEVDSLPESCFDSGLSTLRDPNEYDSEVEYKHQRGFQRSHGVQESFGGDASDTDVPDIRDEETFGLEDVASVLDWKPQGSVSEGSIVSSSRKPISALSPQTDLVDDNAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRTDKDDSRSIT------NLTGTNSKKSPQMKNCC 738 The following BLAST results are available for this feature:
BLAST of TCONS_00011884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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