TCONS_00011983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011983
Unique NameTCONS_00011983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011983 ID=TCONS_00011983|Name=TCONS_00011983|organism=Clytia hemisphaerica|type=transcript|length=1651bp
TGAAGCTTTAATATTTGAAAGGTATTCTGGAGGAAGGCAGAGActccaga
aaaaaagaaaaaaactgaacaaaaaaaatgccAATAAACGAGCTACCCGA
TTCAATATTAttacaaatctttaaaaaatgcgATTCCAAGACTGGATTAT
GGAAAGCAAGAAGCGTCTGCAAGCGTTGGTATGTGATCCTTGCTGACAGT
GAGCTCTGGCAGACCTGTGATTTATCACAATTCAACTTGAATGAtgcgtg
tattttacagaccatctTAAACTACATGCCCGTCAAACGTTTCAAATCca
tcaaaatcaaacaaaacacGATTGAACGAAACATCCTTAAATCACTCTTA
AAACACGCTCGAAGTCTCAATTCATTAACATTACGTCATTGTCGGATAAC
AACACGTGATAATAGCTCGTCCAATCATATACGAGATATCCGATCACATG
ATGCCCAAGCAACCAATCAGATTTTAGAAATACCGTGTGATTTGAAGCAC
ATTGACTTGAGAAAGACAACAGGAGATACTGAGTTATTGGTAGATTTGAT
CACCAAATATGGCGCACAAATTAAAACTTTTGGTGTTACATACAACTTat
caaaatatttcgaaaacGATCGATCACTATTCGACTTTCTACCTAACATT
CATGCATTGGATTTGACTGAAGGATTATGGGTCAATGATGAAGTCATCAG
GGAAATCGCAAAATCGTGTCCTTCGTTGAGATACGTAGGTctatcaaaat
gtcaaaatattaGAGGAGCTAGCATGGAGTTCCTTATGAGACGGTGCACG
AATATTCAGACGCTACTCTTAAGCCGGACAGGCGTCCGAAATGAAGAATT
GCAGAGAGTGAGATGGGAGAACCTTCCTTTGACTGAACTTGATATATCAA
ATTGTTATTATTTGGATGATACAGCGCTCCATAGAATAATCAAGACTTTG
GCACCACAGCTGACGTATTTGAAATGCATAATGACGAATGAGTTATTGAA
AGAGTTAACCGATTCGCGTCATCATTTTCCACTTAAAAGTTTCGAGTTAC
GACGAAGACAAGACTTAGACATGAATCTAGTGacacaatttcttcaaaaa
tgtaATCAACTGGAGGCGCTAGACACTAGCCTAATTCCTATCGAATATGA
AACATTTGAGAACattctaccatttttaccgaAATTGAAATGGTTCAATT
TTACCGGTAACGAAGACATGCTACGAACTGAAGACCTTTTACCGCTCATC
GAAAAACATTGCAAATATATTGAAGAAATTGGTATAAATTTCTATTATTC
GCCTTGTAAGGTGGAAAGACTTTTATTgaaagtcaagatgacgtcactGA
AAAGATTGAATCTTCTAGGATCCAAAATATACGATCTTAATAATCGGACA
GAAGATACGAAACTCGGACATGGTGTTGTTTTGACGTGTGATAAAGAGTA
CAGTCTACCTTCACCGAGGCTAGATACGTTTGATTCAGAGATAGTACAGA
ATTAACTGATAATTTGACTGATAGTATATAACAGTTATGATAATAGATTA
CCGGATAgtgaaaacaaagatttttgtaatttatttttcagttcaTTTAA
ACCCATTCATATAGAAAACCTGTTGAATTCTGACAAGACAAGACAAGCAA
G
Run BLAST on NCBI

protein sequence of TCONS_00011983-protein

>TCONS_00011983-protein ID=TCONS_00011983-protein|Name=TCONS_00011983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MPINELPDSILLQIFKKCDSKTGLWKARSVCKRWYVILADSELWQTCDLS
QFNLNDACILQTILNYMPVKRFKSIKIKQNTIERNILKSLLKHARSLNSL
TLRHCRITTRDNSSSNHIRDIRSHDAQATNQILEIPCDLKHIDLRKTTGD
TELLVDLITKYGAQIKTFGVTYNLSKYFENDRSLFDFLPNIHALDLTEGL
WVNDEVIREIAKSCPSLRYVGLSKCQNIRGASMEFLMRRCTNIQTLLLSR
TGVRNEELQRVRWENLPLTELDISNCYYLDDTALHRIIKTLAPQLTYLKC
IMTNELLKELTDSRHHFPLKSFELRRRQDLDMNLVTQFLQKCNQLEALDT
SLIPIEYETFENILPFLPKLKWFNFTGNEDMLRTEDLLPLIEKHCKYIEE
IGINFYYSPCKVERLLLKVKMTSLKRLNLLGSKIYDLNNRTEDTKLGHGV
VLTCDKEYSLPSPRLDTFDSEIVQN
Run BLAST on NCBI

transcript from alignment at sc0000134:369358..371866-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011983 ID=TCONS_00011983|Name=TCONS_00011983|organism=Clytia hemisphaerica|type=transcript|length=2509bp|location=Sequence derived from alignment at sc0000134:369358..371866- (Clytia hemisphaerica)
TGAAGCTTTAATATTTGAAAGGTAAGATATTTTTACAGTTTTACAAATAC
AGTACCATCAGATCACCTCTATCTCTTGTCATTTTACTCGAATAACTAAA
GATCAATACAAAGCTAGAATTTCTAGGAAAGTCGATTGTAGGTCCTTTTT
ATTAGAAGAATTAAGGAGAAGTAAGGAGAAGTAAGGAAAGTTATCCATTG
TATTGTTGAAAAAATTTATTTACCCTTCTTGAGTAACTTTTGATCTTATA
GAACAAAGAAATTGGTGTGGAAAATAGCTTCTCTAGTCGTCAGTATACAG
GCCGAATTTGAGCTGGGGAAATTGACTTGGTGTCAAAATTAGCGTCAAAA
TAGGGAGTCAATTTTACTGACGTCAAATAAATAATTTCCAATTTTTATTC
GAAATCTTCTGCACTTTTTTTCATTCTTCAAGGTATTCTGGAGGAAGGCA
GAGACTCCAGAAAAAAAGAAAAAAACTGAACAAAAAAAATGCCAATAAAC
GAGCTACCCGATTCAATATTATTACAAATCTTTAAAAAATGCGATTCCAA
GACTGGATTATGGAAAGCAAGAAGCGTCTGCAAGCGTTGGTATGTGATCC
TTGCTGACAGTGAGCTCTGGCAGACCTGTGATTTATCACAATTCAACTTG
AATGATGCGTGTATTTTACAGACCATCTTAAACTACATGCCCGTCAAACG
TTTCAAATCCATCAAAATCAAACAAAACACGATTGAACGAAACATCCTTA
AATCACTCTTAAAACACGCTCGAAGTCTCAATTCATTAACATTACGTCAT
TGTCGGATAACAACACGTGATAATAGCTCGTCCAATCATATACGAGATAT
CCGATCACATGATGCCCAAGCAACCAATCAGATTTTAGAAATACCGTGTG
ATTTGAAGCACATTGACTTGAGAAAGACAACAGGAGATACTGAGTTATTG
GTAGATTTGATCACCAAATATGGCGCACAAATTAAAACTTTTGGTAAGTT
TTTTACCTCGACTAAATTTTCATTAATTTTCTTTTCTATGCCAAAGTGAA
GCTCTTGGATACAATTTCTCAAACTCAAATTTCAAGATAGAGAGAAGACA
GAGCTTTTATGAACTTTTAAAGATATACTACAGTGCATTCTGACAGTCAA
ATGAGGATCACCTCAGTTTTCGTCTGAGCTTGGCAAAAGGGATTGGCAAG
TTCAAAAACATCTCAAACCATAAAACTCTACCCAGTCGATCCGTTTCAGA
GCAATTCTCCATAACTCGAACTTTTAGAATTCAAATCTCTCCTTAAGCAG
AGTAAGTTTTCTGGACCAAGTCTTTAACTGGAATCTCCATACCTTGAACA
ACGCTTCGTTCTTTATACATGTTCGAGTTATGGAAGCTCCCGTTGTATCT
CTGGCGAAAGAAAACATTTTTGCTATCATTTTCCCTATAGGTGTTACATA
CAACTTATCAAAATATTTCGAAAACGATCGATCACTATTCGACTTTCTAC
CTAACATTCATGCATTGGATTTGACTGAAGGATTATGGGTCAATGATGAA
GTCATCAGGGAAATCGCAAAATCGTGTCCTTCGTTGAGATACGTAGGTCT
ATCAAAATGTCAAAATATTAGAGGAGCTAGCATGGAGTTCCTTATGAGAC
GGTGCACGAATATTCAGACGCTACTCTTAAGCCGGACAGGCGTCCGAAAT
GAAGAATTGCAGAGAGTGAGATGGGAGAACCTTCCTTTGACTGAACTTGA
TATATCAAATTGTTATTATTTGGATGATACAGCGCTCCATAGAATAATCA
AGACTTTGGCACCACAGCTGACGTATTTGAAATGCATAATGACGAATGAG
TTATTGAAAGAGTTAACCGATTCGCGTCATCATTTTCCACTTAAAAGTTT
CGAGTTACGACGAAGACAAGACTTAGACATGAATCTAGTGACACAATTTC
TTCAAAAATGTAATCAACTGGAGGCGCTAGACACTAGCCTAATTCCTATC
GAATATGAAACATTTGAGAACATTCTACCATTTTTACCGAAATTGAAATG
GTTCAATTTTACCGGTAACGAAGACATGCTACGAACTGAAGACCTTTTAC
CGCTCATCGAAAAACATTGCAAATATATTGAAGAAATTGGTATAAATTTC
TATTATTCGCCTTGTAAGGTGGAAAGACTTTTATTGAAAGTCAAGATGAC
GTCACTGAAAAGATTGAATCTTCTAGGATCCAAAATATACGATCTTAATA
ATCGGACAGAAGATACGAAACTCGGACATGGTGTTGTTTTGACGTGTGAT
AAAGAGTACAGTCTACCTTCACCGAGGCTAGATACGTTTGATTCAGAGAT
AGTACAGAATTAACTGATAATTTGACTGATAGTATATAACAGTTATGATA
ATAGATTACCGGATAGTGAAAACAAAGATTTTTGTAATTTATTTTTCAGT
TCATTTAAACCCATTCATATAGAAAACCTGTTGAATTCTGACAAGACAAG
ACAAGCAAG

Coding sequence (CDS) from alignment at sc0000134:369358..371866-

>TCONS_00011983 ID=TCONS_00011983|Name=TCONS_00011983|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at sc0000134:369358..371866- (Clytia hemisphaerica)
GTGTTACATACAACTTATCAAAATATTTCGAAAACGATCGATCACTATTC
GACTTTCTACCTAACATTCATGCATTGGATTTGACTGAAGGATTATGGGT
CAATGATGAAGTCATCAGGGAAATCGCAAAATCGTGTCCTTCGTTGAGAT
ACGTAGGTCTATCAAAATGTCAAAATATTAGAGGAGCTAGCATGGAGTTC
CTTATGAGACGGTGCACGAATATTCAGACGCTACTCTTAAGCCGGACAGG
CGTCCGAAATGAAGAATTGCAGAGAGTGAGATGGGAGAACCTTCCTTTGA
CTGAACTTGATATATCAAATTGTTATTATTTGGATGATACAGCGCTCCAT
AGAATAATCAAGACTTTGGCACCACAGCTGACGTATTTGAAATGCATAAT
GACGAATGAGTTATTGAAAGAGTTAACCGATTCGCGTCATCATTTTCCAC
TTAAAAGTTTCGAGTTACGACGAAGACAAGACTTAGACATGAATCTAGTG
ACACAATTTCTTCAAAAATGTAATCAACTGGAGGCGCTAGACACTAGCCT
AATTCCTATCGAATATGAAACATTTGAGAACATTCTACCATTTTTACCGA
AATTGAAATGGTTCAATTTTACCGGTAACGAAGACATGCTACGAACTGAA
GACCTTTTACCGCTCATCGAAAAACATTGCAAATATATTGAAGAAATTGG
TATAAATTTCTATTATTCGCCTTGTAAGGTGGAAAGACTTTTATTGAAAG
TCAAGATGACGTCACTGAAAAGATTGAATCTTCTAGGATCCAAAATATAC
GATCTTAATAATCGGACAGAAGATACGAAACTCGGACATGGTGTTGTTTT
GACGTGTGATAAAGAGTACAGTCTACCTTCACCGAGGCTAGATACGTTTG
ATTCAGAGATAGTACAGAATTAAATGCCAATAAACGAGCTACCCGATTCA
ATATTATTACAAATCTTTAAAAAATGCGATTCCAAGACTGGATTATGGAA
AGCAAGAAGCGTCTGCAAGCGTTGGTATGTGATCCTTGCTGACAGTGAGC
TCTGGCAGACCTGTGATTTATCACAATTCAACTTGAATGATGCGTGTATT
TTACAGACCATCTTAAACTACATGCCCGTCAAACGTTTCAAATCCATCAA
AATCAAACAAAACACGATTGAACGAAACATCCTTAAATCACTCTTAAAAC
ACGCTCGAAGTCTCAATTCATTAACATTACGTCATTGTCGGATAACAACA
CGTGATAATAGCTCGTCCAATCATATACGAGATATCCGATCACATGATGC
CCAAGCAACCAATCAGATTTTAGAAATACCGTGTGATTTGAAGCACATTG
ACTTGAGAAAGACAACAGGAGATACTGAGTTATTGGTAGATTTGATCACC
AAATATGGCGCACAAATTAAAACTTTTGGTGTTACATACAACTTATCAAA
ATATTTCGAAAACGATCGATCACTATTCGACTTTCTACCTAACATTCATG
CATTGGATTTGACTGAAGGATTATGGGTCAATGATGAAGTCATCAGGGAA
ATCGCAAAATCGTGTCCTTCGTTGAGATACGTAGGTCTATCAAAATGTCA
AAATATTAGAGGAGCTAGCATGGAGTTCCTTATGAGACGGTGCACGAATA
TTCAGACGCTACTCTTAAGCCGGACAGGCGTCCGAAATGAAGAATTGCAG
AGAGTGAGATGGGAGAACCTTCCTTTGACTGAACTTGATATATCAAATTG
TTATTATTTGGATGATACAGCGCTCCATAGAATAATCAAGACTTTGGCAC
CACAGCTGACGTATTTGAAATGCATAATGACGAATGAGTTATTGAAAGAG
TTAACCGATTCGCGTCATCATTTTCCACTTAAAAGTTTCGAGTTACGACG
AAGACAAGACTTAGACATGAATCTAGTGACACAATTTCTTCAAAAATGTA
ATCAACTGGAGGCGCTAGACACTAGCCTAATTCCTATCGAATATGAAACA
TTTGAGAACATTCTACCATTTTTACCGAAATTGAAATGGTTCAATTTTAC
CGGTAACGAAGACATGCTACGAACTGAAGACCTTTTACCGCTCATCGAAA
AACATTGCAAATATATTGAAGAAATTGGTATAAATTTCTATTATTCGCCT
TGTAAGGTGGAAAGACTTTTATTGAAAGTCAAGATGACGTCACTGAAAAG
ATTGAATCTTCTAGGATCCAAAATATACGATCTTAATAATCGGACAGAAG
ATACGAAACTCGGACATGGTGTTGTTTTGACGTGTGATAAAGAGTACAGT
CTACCTTCACCGAGGCTAGATACGTTTGATTCAGAGATAGTACAGAATTA
AATGCCAATAAACGAGCTACCCGATTCAATATTATTACAAATCTTTAAAA
AATGCGATTCCAAGACTGGATTATGGAAAGCAAGAAGCGTCTGCAAGCGT
TGGTATGTGATCCTTGCTGACAGTGAGCTCTGGCAGACCTGTGATTTATC
ACAATTCAACTTGAATGATGCGTGTATTTTACAGACCATCTTAAACTACA
TGCCCGTCAAACGTTTCAAATCCATCAAAATCAAACAAAACACGATTGAA
CGAAACATCCTTAAATCACTCTTAAAACACGCTCGAAGTCTCAATTCATT
AACATTACGTCATTGTCGGATAACAACACGTGATAATAGCTCGTCCAATC
ATATACGAGATATCCGATCACATGATGCCCAAGCAACCAATCAGATTTTA
GAAATACCGTGTGATTTGAAGCACATTGACTTGAGAAAGACAACAGGAGA
TACTGAGTTATTGGTAGATTTGATCACCAAATATGGCGCACAAATTAAAA
CTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006724XLOC_006724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011983-proteinTCONS_00011983-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011983-exon-sc0000134-1575043694:371846..371866TCONS_00011983-exon-sc0000134-1575043694:371846..371866Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1575043694:370874..371434TCONS_00011983-exon-sc0000134-1575043694:370874..371434Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1575043694:369358..370426TCONS_00011983-exon-sc0000134-1575043694:369358..370426Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1510915933:371846..371866TCONS_00011983-exon-sc0000134-1510915933:371846..371866Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1510915933:370874..371434TCONS_00011983-exon-sc0000134-1510915933:370874..371434Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1510915933:369358..370426TCONS_00011983-exon-sc0000134-1510915933:369358..370426Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1491911889:371846..371866TCONS_00011983-exon-sc0000134-1491911889:371846..371866Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1491911889:370874..371434TCONS_00011983-exon-sc0000134-1491911889:370874..371434Clytia hemisphaericaexon
TCONS_00011983-exon-sc0000134-1491911889:369358..370426TCONS_00011983-exon-sc0000134-1491911889:369358..370426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:369358..371866 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0995362	0.0786548	0.347944	0.266515	0.310989	0.231126	0.224337	0.229398	3.04348	2.8718	0.167646	0.11994	0.775719	1.4198	3.97536	4.24203	2.28362	2.26255	0.874494	2.15431	1.58492	3.39481	0.64098	0.504053	0.0273076	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001810F-box_dom
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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