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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012049 ID=TCONS_00012049|Name=TCONS_00012049|organism=Clytia hemisphaerica|type=transcript|length=2944bpRun BLAST on NCBI transcript from alignment at sc0000136:385370..396728- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012049 ID=TCONS_00012049|Name=TCONS_00012049|organism=Clytia hemisphaerica|type=transcript|length=11359bp|location=Sequence derived from alignment at sc0000136:385370..396728- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012049 vs. Swiss-Prot (Human)
Match: S15A2 (Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=1 SV=2) HSP 1 Score: 195.282 bits (495), Expect = 6.970e-52 Identity = 162/470 (34.47%), Postives = 243/470 (51.70%), Query Frame = 3
Query: 279 YP*KAEIDDVRALLRVLVMYIPLPVFWALFHQQGSSWTLQAQQMXXXXXXXXXXXXXQMQFFNPVLVLILIPFFDAFLYPGLQRCNLGLSPLKKMTIGMVLAAIAFAITGFIQIKIQDVQPLPVAPPKGQVSIDFVNVSPCE-KVEI--DYDN--FYRTIIPYGK----HSGHDHGQAGDQTFKLRGHNCYAKSDGPYXXXXXXXXXXXXRQTIFMDINDQNQMTAVVKD--HIFPEVSVKKSNSRVRTIYAPDVSKPSRITLKYVHEIEKKQSMTFDNFTSDD-------SNYTKIVADEYQLVVLDQDTGDDIPVSVSERLKLGTFG-AYTITLTRPMHEKSASKLVAHLYEDVVSTSVHRIWQLPQYIVITAGEVMFSVTGLEFAYSQAPPSMKSVLQACWLVTTAFGDLIVVILS-LSKPVDGVEKEMFLYGGVMLVVAIIFAIMSYFYT---YSDYSGNATKPEP 1619
YP K I DV+AL RVL +YIPLP+FWAL QQGS WTLQA +M+ +LG QMQ NP+LVLI IP FD +Y + +C + S L+KM +GM+LA +AFA+ ++IKI ++ P P +V + +N++ E KV + + +N +I + K H ++ D F L+ HN ++ + ++N + V+++ + + VK + SR + T+++V+ + K +++ TS + S Y + EY V + + S L L FG AY +T ++ L A ED+ + + WQLPQY ++TAGEVMFSVTGLEF+YSQAP SMKSVLQA WL+T A G++IV++++ S V E L+ ++LV+ +IF+IM Y+Y D G A K P
Sbjct: 288 YP-KQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMNRNLGFFVLQPD-QMQVLNPLLVLIFIPLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAAVEIKINEMA--PAQPGPQEVFLQVLNLADDEVKVTVVGNENNSLLIESIKSFQKTPHYSKLHLKTKSQDFHFHLKYHNLSLYTE--------------------HSVQEKNWYSLVIREDGNSISSMMVKDTESR---------TTNGMTTVRFVNTLHKDVNISLSTDTSLNVGEDYGVSAYRTVQRGEYPAVHCRTEDKN-----FSLNLGLLDFGAAYLFVITNNTNQ----GLQAWKIEDIPANKMSIAWQLPQYALVTAGEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWA--EFILFSCLLLVICLIFSIMGYYYVPVKTEDMRGPADKHIP 713 The following BLAST results are available for this feature:
BLAST of TCONS_00012049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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