TCONS_00012240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012240
Unique NameTCONS_00012240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012240 ID=TCONS_00012240|Name=TCONS_00012240|organism=Clytia hemisphaerica|type=transcript|length=257bp
ggGAAAAGAGTAGTAAATAGCCCTAATCCAAATataaaaacactgaaaac
aaGTTTTGACCCTATCTTATTACGGACCACGTGtgtttccaaaaaaaaca
tccGTCGCGACCTGAGCTCTCGTTTGAAGGGACTTTCAAGCGAACTGAGT
CATAAGGAGAAAAAATCATTGACAGTGAATTACTGTTGACAGACTGTTGA
AAGTGATGGATAGGAGGAATACTGGTTCAGCTTTTTGGCTTGCATGTACA
GTTGATG
Run BLAST on NCBI

transcript from alignment at sc0000141:468956..469212

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012240 ID=TCONS_00012240|Name=TCONS_00012240|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0000141:468956..469212 (Clytia hemisphaerica)
CATCAACTGTACATGCAAGCCAAAAAGCTGAACCAGTATTCCTCCTATCC
ATCACTTTCAACAGTCTGTCAACAGTAATTCACTGTCAATGATTTTTTCT
CCTTATGACTCAGTTCGCTTGAAAGTCCCTTCAAACGAGAGCTCAGGTCG
CGACggatgttttttttggaaacaCACGTGGTCCGTAATAAGATAGGGTC
AAAACttgttttcagtgtttttatATTTGGATTAGGGCTATTTACTACTC
TTTTCcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006893XLOC_006893Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012240-exon-sc0000141-1491911889:468956..469212TCONS_00012240-exon-sc0000141-1491911889:468956..469212Clytia hemisphaericaexon
TCONS_00012240-exon-sc0000141-1510915933:468956..469212TCONS_00012240-exon-sc0000141-1510915933:468956..469212Clytia hemisphaericaexon
TCONS_00012240-exon-sc0000141-1575043694:468956..469212TCONS_00012240-exon-sc0000141-1575043694:468956..469212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:468956..469212 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.926807	0.732375	2.65074	4.96318	13.3202	9.32566	9.05171	19.6816	11.4269	6.17079	0	0	0	2.11522	23.3783	19.8768	9.96721	11.668	5.51598	2.14921	2.21364	3.2927	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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