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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012299 ID=TCONS_00012299|Name=TCONS_00012299|organism=Clytia hemisphaerica|type=transcript|length=1300bp caaatttatcaattagaCACCAACATCATAACGGACCAAAATGAAATCAC AGCTATATTTACAGATGGTATTGCTCGTCGCTACATCAGCAATTTTTGGT TATGACAATACCGAGTCAAGATTACATGAAGATCTCACAAAAGGTTACAA CACTATCATTCGACCGGTAGAAAAGCCTGTAGATGCGATACAAGTCAAAT TTGATATCGCCCTACAACAAATCATCGAAGTGAATGAGAAAGAGGAATCT CTGGTGGTCAGCGTCTTTTTACGGCAATATTGGACTGATGTTAAATTGAG ATGGAATATGTCCGAATACGGAAATATCGCTTCTACAAAATTCAGTCCCG GATCTGTATGGGTACCGGATCTCATGTTGTATAATAATGCAGAGAAATCA GACAATTTTGGTGGCGGTCTTGATCAGCTCAAGACTCGTGTTATTGTCAA TAATAAGGGACAAGTTTCTTGGTTAGCTCCAGCTATTATCACCGGGGAAT GCTCTATGAACATTAGGCATTTCCCTTTTGACACACAAATTTGTCGATTG AAATTTGGTTCCTGGACTTATCATGGGGATGAAATTGATCTCCAACCTGC AAGAGATGAAAGAACATTTGATTTGGGATCATACTCTGAGCATTCAGAAT GGACAATTGAAAACGCATACCTCAAACGAAACGTACTATACTACGGATGC TGTCCTGAACCTTACCCTGATGTCACTGCTGAATTCACGTTGAAACGGAA ACCTCTGTTTTACGTATTGAATCTATTGCTACCAATTATTTTTATTGGTG TTTTGACGCTTCTGGCTTTCTTTCTACCAGCTGAATCAGGTGAACGAATC TCCTTTGCTGTCACTCTGATGTTAGCATTGACAGTTTTCATGTTGATAGT AGCTGACATGATTCCTGCTAATTCAGAAATAGTTCCAATGCTTGGAATAT TCTTCACTTGTGTTATGATTGAAATGGTCTTGATGGTATTCGCTATGTGT TATACACTGAACCTACATTTTAAAGAGCCAAATGCTGAAAACCGTATTGG AAAGTGGACACGGGCTATAGTTTATAACCGGCTTGCGATTTATCTTGGAG TACGTAAACGGGATGAGGAATTCGCAAACGCCAATGGATGGAGCACGGCA AGAAAATACGCGAACGGTAATGGGCCTTATGAAGAAGATGGATTTGAAGA cgttgctgcaaacaaaaacgTAGTCCGTTTTACAGGGTTGAATCATAACG ACAAGTCTGACTTCGAAAAAGAAAGCACGTCAACGAAGCTGATGAAGAAG Run BLAST on NCBI protein sequence of TCONS_00012299-protein >TCONS_00012299-protein ID=TCONS_00012299-protein|Name=TCONS_00012299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
MKSQLYLQMVLLVATSAIFGYDNTESRLHEDLTKGYNTIIRPVEKPVDAI QVKFDIALQQIIEVNEKEESLVVSVFLRQYWTDVKLRWNMSEYGNIASTK FSPGSVWVPDLMLYNNAEKSDNFGGGLDQLKTRVIVNNKGQVSWLAPAII TGECSMNIRHFPFDTQICRLKFGSWTYHGDEIDLQPARDERTFDLGSYSE HSEWTIENAYLKRNVLYYGCCPEPYPDVTAEFTLKRKPLFYVLNLLLPII FIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVADMIPANSEIVPM LGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNAENRIGKWTRAIVYNRLAI YLGVRKRDEEFANANGWSTARKYANGNGPYEEDGFEDVAANKNVVRFTGL NHNDKSDFEKESTSTKLMKK Run BLAST on NCBI transcript from alignment at sc0000143:504287..508574+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012299 ID=TCONS_00012299|Name=TCONS_00012299|organism=Clytia hemisphaerica|type=transcript|length=4288bp|location=Sequence derived from alignment at sc0000143:504287..508574+ (Clytia hemisphaerica) caaatttatcaattagaCACCAACATCATAACGGACCAAAATGAAATCAC
AGCTATATTTACAGATGGTATTGCTCGTCGCTACATCAGGTAAGGAAGAA
GatagctttttcttttttcagtacGAATTGGGTTTGTTACTTATAATTTT
GACACGAACCGTATTCATAAATTTCACCAATTGATTTGAAGTCAAAAACA
TAAGAAATGTTATTCAACAACAAATTCTACACCAAAACTACAATCTGcgt
tcaaattttttgaaaattatgtttCCTCACTTTTTGAAATTAGAAATTTA
GGTGAAAAAGTCACTCTTGTGCTATCCGTTCaatgtaatcgaatatttca
acctGGGATTTGGgatattttttaaactttttgaatcCTCAGATCCTTTG
GATCTAattcttaagtctagcgttaaaactcagtgTTACAACTCTACCCT
TCTAACTaggttagagcgcttccaaatcgtttgcgACTTTAAGACTTCTt
gggaatttctctttttttctcaaatattacgaccataaTTCTAAATATAT
AGTCCAATCTTATTTCTAGCTTTTGGGGGTGAGGGCACTCAAAGCAAGCG
ACCTACCGTAGGTGCGGCCTTTTAAGGGTGCGTTTTAAGCTTCCCAAAGT
TAacaaaaagggtcaaaataaatagaaaatgcACTCTCAGTGTGTAAAGA
GTGAGGCCAAATtctggaaaatctgaccattttttccCTAAAAGGGAATA
ATATTTTCACTGTCAGGATTGATCTTTCGCCCAAGTTACTGTAATGTTCT
GACTTTAAAGACCTAATTTTAGGTTGCACATATAGAGGTTTTTAAATCAA
GTGCCCCTTCCCCGGGCTCTCATTGGTTTttgattcttctttttctcaGC
AATTTTTGGTTATGACAATACCGAGTCAAGATTACATGAAGATCTCACAA
AAGGTTACAACACTATCATTCGACCGGTAGAAAAGCCTGTAGATGCGATA
CAAGTCAAATTTGATATCGCCCTACAACAAATCATCGAAGTGGTAcgtta
atacacccctgtgtgtCGAGACAGGGATTTGTGCTAATTATTTCTCGTCT
TTTTTTTCTGGCTAACTATAGGAATTCAATTAGACTTGATTGTTTTTGTA
AATTCGGTATGACTCTATTTCCTAATTACATTCAACGGTCTTGTTTGCGC
CTGAATATCTAAGCTAGTTTTTTCCTTTTACTATACTCGGTGTTTGGTCA
ACCTTTTTAAACCCAGGGCTGTCGAATTCTTAACAATGTAGACATACGTT
GATTTTNTTCCTTTGATGTTTCTAATATACTCGGTGCTTGGTCAACCTTT
TTAAACCCAGGGCTGTCGAATTCTTAACAATGTAGACATAcgttaatttt
ctgatttttttggaaTGAAACTCAATTTCACGAAACCAGGAGTTGAATTT
GCGACCTGGGTATCCAGGCTGTGCAAGATTATGATATTTCAATTCATAAT
ATTTTACGGTAGGCAATACATTCTGCGTCAATATGGAATTTTAAAAGATG
TTTTCTTTGTCTATTTTACAGAATGAGAAAGAGGAATCTCTGGTGGTCAG
CGTCTTTTTACGGCAATATTGGACTGATGTTAAATTGAGATGGAATATGT
CCGAATACGGAAATATCGCTTCTACAAAATTCAGTCCCGGATCTGTATGG
GTACCGGATCTCATGTTGTATAATAAGTAAGCTTAGTTGTAAAAGTTACA
AAAGTCCTTAGGGCTGAAGTGAGGGGCCCAATATTGGAGCTAACTGACGT
TGCTCACCATGGGTTGGTAACGGAGAAAACATTTGAATTTCGAGGggtta
aaagtttttgaaaagagTTTATGGAAAAATAGTTGaacgttttcaaaaaa
gtctctttctcggcaaaaagtttatttttaaaagtctgtaagcgtcaact
gtaaatctccaaaaaaaattcccgaACCAAAATTTTATGCCGGCTCTTCT
AAATCTCGTTGTCATTACCCTgttttcgatttttcatttCAGTGCAGAGA
AATCAGACAATTTTGGTGGCGGTCTTGATCAGCTCAAGACTCGTGTTATT
GTCAATAATAAGGGACAAGTTTCTTGGTTAGCTCCAGCTATTATCACCGG
GGAATGCTCTATGAACATTAGGCATTTCCCTTTTGACACACAAATTTGTC
GATTGAAATTTGGTTCCTGGACTTATCATGGGGATGAAATTGATCTCCAA
CCTGCAAGAGATGAAAGAACATTTGATTTGGGTAGGTGTATACTAAATTT
GCACAAGAACTGCAATAAGTCATCTGCGGTATTGCGAATTCTCAAAGGTG
AAAGATATCTAAAACACAAAATAGTAATTGCTCCGTTCCTGACTGAGGCA
ATATAATGTGTCATCTTAATTAAATAATCAACAAAGACGATATATTATGT
TTCTTCCACCGGCGTAGAGTTACTGTATattcttggccctttttacgctg
gCCCTAATTTAACACCGGTCCccttaacgccggcccttattacgccacag
cctaattttgtgCTTACGTCAAGtagggccgttaataacgccaaaTTAGT
TTAGAAGTCTCAAAGGACCAGGCAAAGCTGGGGAAAGTTTTCCATAGCCT
TGAAGGGGGTAAGGTGATTTTGGCTTAGAAACCCTtgaaaagtagatttt
tgaAGTTCCTTATTGACGAAAACTGATGACTatctgatagagcatgaaaa
gtcatttgtctcatttggtCGACTAAGTTCCCCGGATATGGAtcatacgt
cttcaaaaatgtcaacttttatgctgacgtcagcatttatgagaaaatta
tttaacagaaaatatttactttcaaCAGACGCATCTTGAAGAGTactaaa
agtaattttttctgTCAAAAATTCATATGAAGCCTCGGGGGtggggggta
ctaggattgcGAGCTAACGGCGGTGAGCTGCCCGATTTTCGACCTTTGCA
TCCTTAGCGGGAGTAAAAAAGAGGAACAATTGGTaagttttgtgaatttt
acgacccttattgggactaatgtgaccaaattttgacgtttttggggaca
aaaaattaaaattttcctatttttttaaacCCTTAGTGGTCCTTTAGAGG
CCCAAAAAAGGTACCTTTatgggcggcacatacccgtccgtatcctccat
ttgcctaagcaCCCCCTCCCAGATTCGAAGTAATTCGGTGTACTTTTTCA
ATTTAAAGTTAGTGGCAAACAGCCGGTCTTCCTTTTCATGCTTCCGTTAA
TTACGTCAAGAATATCACAAATATATTTTAGGATCATACTCTGAGCATTC
AGAATGGACAATTGAAAACGCATACCTCAAACGAAACGTACTATACTACG
GATGCTGTCCTGAACCTTACCCTGATGTCACTGCTGAATTCACGTTGAAA
CGGAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATTATTTTTAT
TGGTGTTTTGACGCTTCTGGCTTTCTTTCTACCAGCTGAATCAGGTAGGT
GCATCGAATGTctaaaatgaaaacactttGGGCTAAGGCGTCAGCGTCTG
AAACCAGGGGCTCCTAGTTTAAATCCCCATTCTTTTTTACGTTTTACATT
ATAGTTCATATAGATAGCAGCACCGGCtagccgtggaccccgtgaaaaca
atccaAAGACTGTCTGAAAtttctagattactgggctatccacgtcaAAT
ATCGGCTCTTAGGAACGTTTTCGGCCAATCGAAAAATAATCAATgttcaa
atttatgaaattttcgtcatcttttAGGTGAACGAATCTCCTTTGCTGTC
ACTCTGATGTTAGCATTGACAGTTTTCATGTTGATAGTAGCTGACATGAT
TCCTGCTAATTCAGAAATAGTTCCAATGCTTGGAATATTCTTCACTTGTG
TTATGATTGAAATGGTCTTGATGGTATTCGCTATGTGTTATACACTGAAC
CTACATTTTAAAGAGCCAAATGCTGAAAACCGTATTGGAAAGTGGACACG
GGCTATAGTTTATAACCGGCTTGCGATTTATCTTGGAGTACGTAAACGGG
ATGAGGAATTCGCAAACGCCAATGGATGGAGCACGGCAAGAAAATACGCG
AACGGTAATGGGCCTTATGAAGAAGATGGATTTGAAGAcgttgctgcaaa
caaaaacgTAGTCCGTTTTACAGGGTTGAATCATAACGACAAGTCTGACT
TCGAAAAAGAAAGCACGTCAACGAAGCTGATGAAGAAG Coding sequence (CDS) from alignment at sc0000143:504287..508574+ >TCONS_00012299 ID=TCONS_00012299|Name=TCONS_00012299|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000143:504287..508574+ (Clytia hemisphaerica) ATGAAATCACAGCTATATTTACAGATGGTATTGCTCGTCGCTACATCAGC AATTTTTGGTTATGACAATACCGAGTCAAGATTACATGAAGATCTCACAA AAGGTTACAACACTATCATTCGACCGGTAGAAAAGCCTGTAGATGCGATA CAAGTCAAATTTGATATCGCCCTACAACAAATCATCGAAGTGAATGAGAA AGAGGAATCTCTGGTGGTCAGCGTCTTTTTACGGCAATATTGGACTGATG TTAAATTGAGATGGAATATGTCCGAATACGGAAATATCGCTTCTACAAAA TTCAGTCCCGGATCTGTATGGGTACCGGATCTCATGTTGTATAATAATGC AGAGAAATCAGACAATTTTGGTGGCGGTCTTGATCAGCTCAAGACTCGTG TTATTGTCAATAATAAGGGACAAGTTTCTTGGTTAGCTCCAGCTATTATC ACCGGGGAATGCTCTATGAACATTAGGCATTTCCCTTTTGACACACAAAT TTGTCGATTGAAATTTGGTTCCTGGACTTATCATGGGGATGAAATTGATC TCCAACCTGCAAGAGATGAAAGAACATTTGATTTGGGATCATACTCTGAG CATTCAGAATGGACAATTGAAAACGCATACCTCAAACGAAACGTACTATA CTACGGATGCTGTCCTGAACCTTACCCTGATGTCACTGCTGAATTCACGT TGAAACGGAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATTATT TTTATTGGTGTTTTGACGCTTCTGGCTTTCTTTCTACCAGCTGAATCAGG TGAACGAATCTCCTTTGCTGTCACTCTGATGTTAGCATTGACAGTTTTCA TGTTGATAGTAGCTGACATGATTCCTGCTAATTCAGAAATAGTTCCAATG CTTGGAATATTCTTCACTTGTGTTATGATTGAAATGGTCTTGATGGTATT CGCTATGTGTTATACACTGAACCTACATTTTAAAGAGCCAAATGCTGAAA ACCGTATTGGAAAGTGGACACGGGCTATAGTTTATAACCGGCTTGCGATT TATCTTGGAGTACGTAAACGGGATGAGGAATTCGCAAACGCCAATGGATG GAGCACGGCAAGAAAATACGCGAACGGTAATGGGCCTTATGAAGAAGATG GATTTGAAGAcgttgctgcaaacaaaaacgTAGTCCGTTTTACAGGGTTG AATCATAACGACAAGTCTGACTTCGAAAAAGAAAGCACGTCAACGAAGCT GATGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00012299-exon-sc0000143-1491911889:504287..504375 | TCONS_00012299-exon-sc0000143-1491911889:504287..504375 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1510915933:504287..504375 | TCONS_00012299-exon-sc0000143-1510915933:504287..504375 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1575043694:504287..504375 | TCONS_00012299-exon-sc0000143-1575043694:504287..504375 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1491911889:505186..505328 | TCONS_00012299-exon-sc0000143-1491911889:505186..505328 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1510915933:505186..505328 | TCONS_00012299-exon-sc0000143-1510915933:505186..505328 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1575043694:505186..505328 | TCONS_00012299-exon-sc0000143-1575043694:505186..505328 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1491911889:505858..506012 | TCONS_00012299-exon-sc0000143-1491911889:505858..506012 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1510915933:505858..506012 | TCONS_00012299-exon-sc0000143-1510915933:505858..506012 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1575043694:505858..506012 | TCONS_00012299-exon-sc0000143-1575043694:505858..506012 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1491911889:506329..506567 | TCONS_00012299-exon-sc0000143-1491911889:506329..506567 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1510915933:506329..506567 | TCONS_00012299-exon-sc0000143-1510915933:506329..506567 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1575043694:506329..506567 | TCONS_00012299-exon-sc0000143-1575043694:506329..506567 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1491911889:507618..507830 | TCONS_00012299-exon-sc0000143-1491911889:507618..507830 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1510915933:507618..507830 | TCONS_00012299-exon-sc0000143-1510915933:507618..507830 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1575043694:507618..507830 | TCONS_00012299-exon-sc0000143-1575043694:507618..507830 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1491911889:508114..508574 | TCONS_00012299-exon-sc0000143-1491911889:508114..508574 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1510915933:508114..508574 | TCONS_00012299-exon-sc0000143-1510915933:508114..508574 | Clytia hemisphaerica | exon |
TCONS_00012299-exon-sc0000143-1575043694:508114..508574 | TCONS_00012299-exon-sc0000143-1575043694:508114..508574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000143 | supercontig | sc0000143:504287..508574 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0006811 | ion transport |
Vocabulary: Molecular Function
Term | Definition |
GO:0005216 | ion channel activity |
GO:0005230 | extracellular ligand-gated ion channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006811 |
ion transport |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0005230 |
extracellular ligand-gated ion channel activity |
molecular_function |
GO:0005216 |
ion channel activity |
Blast
BLAST of TCONS_00012299 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5) HSP 1 Score: 274.248 bits (700), Expect = 9.462e-86 Identity = 133/336 (39.58%), Postives = 208/336 (61.90%), Query Frame = 2
Query: 113 ESRLHEDLTKGYNTIIRPVEKPVDAIQVKFDIALQQIIEVNEKEESLVVSVFLRQYWTDVKLRWNMSEYGNIASTKFSPGSVWVPDLMLYNNAEKSDNFGGGLDQLKTRVIVNNKGQVSWLAPAIITGECSMNIRHFPFDTQICRLKFGSWTYHGDEIDLQPARDERTFDLGSYSEHSEWTIENAYLKRNVLYYGCCPEPYPDVTAEFTLKRKPLFYVLNLLLPIIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVADMIPANSEIVPMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNAENRIGKWTRAIVYNRLAIYLGVRKRDEE 1120
+ +L+++L K YN + RPV + V F ++L QI++V+EK + L +++L+ WTD L+WN+SEY + + +F G +W PD++LYN+A++ + T V+VN+ G +L P I C +++R FPFD Q C+LKFGSW+Y G +DLQ + D+ Y + EW + KR+ +Y CC EPYPDVT T++R+ L+Y LNLL+P + I L LL F LPA+SGE+IS +T++L+LTVFML+VA+++PA S+ VP++ +F MI + L V L H +P+ ++ KWTR I+ N A +L +++ E+
Sbjct: 26 QRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSADERFD-----ATFHTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQ----MQEADISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDG-GKMPKWTRVILLNWCAWFLRMKRPGED 351
The following BLAST results are available for this feature:
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