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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012430 ID=TCONS_00012430|Name=TCONS_00012430|organism=Clytia hemisphaerica|type=transcript|length=2220bpRun BLAST on NCBI protein sequence of TCONS_00012430-protein >TCONS_00012430-protein ID=TCONS_00012430-protein|Name=TCONS_00012430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MEHPSVTLKNLAKENNIYDITSKDLATLLDKQDELSKYRKQFAYPRMKTLRun BLAST on NCBI transcript from alignment at sc0000144:507973..522800+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012430 ID=TCONS_00012430|Name=TCONS_00012430|organism=Clytia hemisphaerica|type=transcript|length=14828bp|location=Sequence derived from alignment at sc0000144:507973..522800+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:507973..522800+ >TCONS_00012430 ID=TCONS_00012430|Name=TCONS_00012430|organism=Clytia hemisphaerica|type=CDS|length=20790bp|location=Sequence derived from alignment at sc0000144:507973..522800+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012430 vs. Swiss-Prot (Human)
Match: KYNU (Kynureninase OS=Homo sapiens GN=KYNU PE=1 SV=1) HSP 1 Score: 438.343 bits (1126), Expect = 1.177e-145 Identity = 220/465 (47.31%), Postives = 312/465 (67.10%), Query Frame = 1
Query: 109 MEHPSVTLKNLAKENNIYDITSKDLATLLDKQDELSKYRKQFAYPRMKTLPKVDLSIVNGEEDCVYLCGHSLGLCPKKTEDVMMEEIKKWKEMGVEGHMNGKYPWAFIEEYIFKQMARLVGCKEIEVWIMNTLSVNLNVMMVPFYRPNPNRHKILIETGAFPSDHIAVEAQIRYHGYDPATSLLIAKPRTGEESIKMDDLIELIEKEGDEIALILFAGVQYYTGQFFDLKRITDAGHKKGCIVGFDLAHAVGNVELKLHDWNVDFACWCTYKYMNSGPGATGGVYLHEKYANENYNLKRH-AGWWGVDFENRFKMDNSDLPFVPGPAGFAHSNPPLFSTMGLFASLEQFDDVGIQKLVKKQRLLTGYLELLINTHFNK---PNEKQHVSYITPLSIEERGCMLSFAFSFPIENIFAGLVKRGVVCDVRKPKVLRIAPAPFYNSFDDVHRFVQILLDVIEQNKNEN 1491
+E P+ T++ +A E + T + +A LD++D+L +R+ F P+++ LP VDLS+VN +E+ +Y G+SLGL PK + + EE+ KW ++ GH GK PW +E I M +VG E E+ +MN L+VNL+++M+ F++P P R+KIL+E AFPSDH A+E+Q++ HG + S+ + KPR GEE+++++D++E+IEKEGD IA+ILF+GV +YTGQ F++ IT AG KGC VGFDLAHAVGNVEL LHDW VDFACWC+YKY+N+G G G ++HEK+A + +K GW+G + RFKMDN L +PG GF SNPP+ L ASLE F ++ L KK LLTGYLE LI ++ K +K V+ ITP +EERGC L+ FS P +++F L KRGVVCD R P +R+AP P YNSF DV++F +L +++ + +N
Sbjct: 6 LELPADTVQRIAAELKCHP-TDERVALHLDEEDKLRHFRECFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHA---HTIKPALVGWFGHELSTRFKMDNK-LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAETKN 465 The following BLAST results are available for this feature:
BLAST of TCONS_00012430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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