TCONS_00012433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012433
Unique NameTCONS_00012433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012433 ID=TCONS_00012433|Name=TCONS_00012433|organism=Clytia hemisphaerica|type=transcript|length=888bp
ataaactttttttgttgaatttcaggaTATCCCCCAATGGCTCCAGGAGG
ACAACCGGGATTCGATTCTGTTGATTCAGACCCAGAGGATTaTGTACGTT
CCAAAGATGCAAAACAACCGGTGACTGTCAAGTTTGTCAACAAAACAACT
TCAAAGGTTAAACTTTACTGGATTGActacaaaggaaaatttaaaaagtc
tgGCAAAATAAAGGAAGGTCGAGTTGAGGTGGTTGACAGCTATGAAGGTC
ACAAATTCATGGTGGAAGGCAAGAAAAGTTCAGACCCGGTTATCAACGGG
AATGAAATGTTTATTGTTCGCACTGGTCATGGAAGCCATGGAGAAGTGAA
AGCAGACATCACACATGGTCCAAAAGACATTAAAAACTTACGATCTGCTC
AAAATGGACATCCCGTTCAACTGAAGTTTTCAAATCGTACACATTCATAC
GCTACCCTTGAACTTATCGATCAAAGCGGTCACACGAAGCACTTGAAAGA
TATCGCTCCAAAGAAAGCCTGGTCATTCAACACATTCGAAGGACAGTACT
TGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAGTTTGCCTTGAATTAT
GGACAATTCTGGAAAGCCACCAAACCTCACATTCCCAATTTCGTGGAAAA
AGTCTTAATCACTGAGGATTTAGATGACAGCTCTTCTTCAAGCAGCTCCG
ACTAATTATCAGGGCATCTACCTGTCTTTGTATTTGTCGCTCGCATTTTG
TGTTTAAACATGCACCCTTCATTTTTCTATCTAGAGATGTTTTGAAGAAT
ACTTCGTAATAATGTGTTAaactattttttaaatttttggtttGAGGAGA
TTCAGACTAAATGTTTAGTCAAAATCGTATGAAAATTA
Run BLAST on NCBI

transcript from alignment at sc0000144:15680..18951-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012433 ID=TCONS_00012433|Name=TCONS_00012433|organism=Clytia hemisphaerica|type=transcript|length=3272bp|location=Sequence derived from alignment at sc0000144:15680..18951- (Clytia hemisphaerica)
ATAAACTTTTTTTGTTGAATTTCAGGATATCCCCCAATGGCTCCAGGAGG
ACAACCGGTAAGATTTAATTTTCGTTGATGCGTTGTAAATATTTCCATCG
ATTAAAAGTCCGCCTTCCAAACCTTTTTTTAATACTAGTTTAAAATAAGG
TTGTAATGATTACATACAATGCAAATTGACTGCAATAAGTAAAATAGATA
TTTTTGAATTGAACATTTTACTGTTTGTTTAAAAGAAAAACTTTCTTCGT
TAGCCCCTTGAGTATCCCTTTTGATATTCTTTTCTTTCTTTTTCTTTAGA
GTCATGGACCACAGCCTGTAAGCTTTTATATTGATCGAGGTTGTCATTTT
ATTATCTTTCTAATTCCTTTTATATTTGCTTGTATTGGTATTTTTACCAT
CTTCTTAAGATTTTACATCTTTTCTTTTAGGGATTCGATTCTGTTGATTC
AGACCCAGAGGATTGTAAGTAGCATAGTGTTTTTGAGATCACCGAATCAA
TCAAGTGTTACGTTCTATTTTGTATAATGGAAAGCTACTTGCTAGATCTA
AAACAGTTTTCTATTTTGTATTTTGTAGATGTACGTTCCAAAGATGCAAA
ACAACCGGTGACTGTCAAGTTTGTCAACAAAACAACTTCAAAGGTTAAAC
TTTACTGGATTGACTACAAAGGAAAATTTAAAAAGTCTGGCAAAATAAAG
GAAGGTCGAGTTGAGGTGGTTGACAGCTATGAAGGTCACAAATTCATGGT
GGAAGGCAAGAAAAGTTCAGACCCGGTTATCAACGGGAATGAAATGTTTA
TTGTTCGCACTGGTCATGGAAGCCATGGAGAAGTGAAAGCAGACATCACA
CATGGTCCAAGTAAGAACTGTCCTTATTGTTTTCAAGTAGTCTTGAGAAT
TTGAGCGTATTGTGCTCATTTCTTCAAATAAAGGTCACAGTGAAATTACA
TACGGAAATTATGGGCAGTCAGTAGGTCTTTGTACAAATAGTAGAAGAAA
CATCCTCAAACTTTCCCGATCATGGGAGAGGAACCGCTTGAAACGTAGTC
GAACGTAAATCTCACGATCCAAGCTACGATAAACTTTCATGATGAATATT
ACTGGCTCGATAAACTCTAACTTATTTAGACAACAGTGATCTTTAAATTT
GAAAATTTTAAATGCGGCACTTACCGGGTGCGCCAAACTAAGTATATAAG
GTTTGTCAAGACCAGAGGGGTGGGTACTAATATCCAAGACACATATGAGT
ACTAAAAGGGTTTTTGACGATTTTTGACATACCCCCACCTAATTTTTGAA
AAGGAATTTTTTTTGGACATTTTAGCATAGTGACCATCTAAATTAGGCTT
ATTTTGAAATTCGGTTCAGAGAATGGGTCTTTGGACTTTCAACAAAATGC
CAACTCTGGTTATTTAGGCTGTCAATGAACCTGATCTCTCTATATTCTAG
ATGAAGACTCAGAAACAGTCCAGACACTTTTGCTCTGTTCTACTTTAGTT
ATTGCAAAGAATGATTAGTTACTTTTCACCTCTAATTTACAGCTTGCTAT
TTTTTTTATCTAGTTATCCATGGTTCTTTTCAAAAATTAAGTATTTAAAC
TTCGAAAACATTTTTTTTCTATAGTATATAAAAGCAGAACATTAAATACA
CCCCTGTTTCACATCCCCGGTGGAACCTTTTTCCTCAGTGGGAATAAAAA
TTCTTATTGAAATGCTAATGGGGATAGAAATTCTATTGTTCCAAGGTTAA
AAAACCCAGTGGGGATGGTTTTGGAGTGCAATTTTTAAACATAGAATTTC
GAGTGAGGATAAAAACAAAGTCAATTTCCCAGTGGGGACGAAATTTTTGC
TTAATTTGTGGCACAGGGGTGTTTAAATCTTAAATATANCTGAAATTCAA
GGGTATTTTCCCAGTGGGGACGAAATTTTTGCTTAATTTGTGGCACAGGG
GTGTTTAAATCTTAAATATGGAAAGTTTTTATTCTTTTCATTTTGCCTAA
AATGCTCGATCAATAGTTAAATTTCCTAAAATTTAGTGATTTTTATACTC
GTAAATTTCTTAAAGACCCCACCTAATTTGGGATTTTAGTATGGTACTAA
AATGCTTTAAGGCTTTTTTTTGTAATAATATCATGTCACTAAAGGTCACG
ATGTCTTAAATTTTAGTACCGACCCCCCCCCCGGTCAAGATTAGTAGTAA
CTAACGGTTAGACATTTTTTTGGATTTTTTTAATTCTATTAAATTTTGAT
ATATAAAGCTTCCATCTCAGTCAATCAAAAGTTGTCAAAAAACTGAAAGT
TCTAACCTACCGAAAAATTGCTACTGGTATTGTCATCTCTCGAGGACCTC
ATCATGGTTCATACTGTGGCAGTGGTTTTTAAAATCTTTTTTAAAGTGAA
AGGCACCCTATTCGGGAAACTAGATTCGGGAAACTAGATCAAGCGTGTTG
AAAAGGTGGAAAGGTCTAAGTTTGGTACGGAAGCTTTTCTAGTTCTTTTC
TTTTCTTTTTCTTTTAAGAGGGTGAATATACGGTAGCACATGGTCAGTCA
CTACTGTTATACTTTATTTCCCATTTCAGAAGACATTAAAAACTTACGAT
CTGCTCAAAATGGACATCCCGTTCAACTGAAGTTTTCAAATCGTACACAT
TCATACGCTACCCTTGAACTTATCGATCAAAGCGGTCACACGAAGCACTT
GAAAGATATCGCTCCAAAGAAAGCCTGGTCATTCAACACATTCGAAGGAC
AGTACTTGGTTGCTCACGAGAAAGGAAAAAAACACGAAAAGTTTGCCTTG
AATTATGGACAATTCTGGAAAGCCACCAAACCTCACATTCCCAATTTCGT
GGAAAAAGTCTTAATCACTGAGGGTAAGTCAATGTCCCTCTTGTGAAATC
TGCTTCTAAAACTGAATTCTCGTAAGGTGTTTGTCTCAGTGGATAATAAT
TTGAATAAATTTGTTTGATTAATTACATGTTCCTTTTCAATAAAACCAGA
TAAAACAGCTATTCAGAGACAATTTATTCTATCATTCTCTTTTCTTTATA
GATTTAGATGACAGCTCTTCTTCAAGCAGCTCCGACTAATTATCAGGGCA
TCTACCTGTCTTTGTATTTGTCGCTCGCATTTTGTGTTTAAACATGCACC
CTTCATTTTTCTATCTAGAGATGTTTTGAAGAATACTTCGTAATAATGTG
TTAAACTATTTTTTAAATTTTTGGTTTGAGGAGATTCAGACTAAATGTTT
AGTCAAAATCGTATGAAAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006982XLOC_006982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012433-exon-sc0000144-1575043694:18895..18951TCONS_00012433-exon-sc0000144-1575043694:18895..18951Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1575043694:18488..18521TCONS_00012433-exon-sc0000144-1575043694:18488..18521Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1575043694:18092..18373TCONS_00012433-exon-sc0000144-1575043694:18092..18373Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1575043694:16079..16372TCONS_00012433-exon-sc0000144-1575043694:16079..16372Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1575043694:15680..15900TCONS_00012433-exon-sc0000144-1575043694:15680..15900Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1510915933:18895..18951TCONS_00012433-exon-sc0000144-1510915933:18895..18951Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1510915933:18488..18521TCONS_00012433-exon-sc0000144-1510915933:18488..18521Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1510915933:18092..18373TCONS_00012433-exon-sc0000144-1510915933:18092..18373Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1510915933:16079..16372TCONS_00012433-exon-sc0000144-1510915933:16079..16372Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1510915933:15680..15900TCONS_00012433-exon-sc0000144-1510915933:15680..15900Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1491911889:18895..18951TCONS_00012433-exon-sc0000144-1491911889:18895..18951Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1491911889:18488..18521TCONS_00012433-exon-sc0000144-1491911889:18488..18521Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1491911889:18092..18373TCONS_00012433-exon-sc0000144-1491911889:18092..18373Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1491911889:16079..16372TCONS_00012433-exon-sc0000144-1491911889:16079..16372Clytia hemisphaericaexon
TCONS_00012433-exon-sc0000144-1491911889:15680..15900TCONS_00012433-exon-sc0000144-1491911889:15680..15900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:15680..18951 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
116.7	116.644	86.017	67.5333	9.63857	4.79549	18.5425	1.87619e-08	57.6847	59.9647	40.2283	43.8298	32.9835	29.9584	33.7326	37.6028	36.9818	44.8643	27.7605	36.1619	43.7894	41.9316	41.8187	51.3146	8.40094	4.28803	35.4976	31.5801	32.9188	28.4111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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