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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012477 ID=TCONS_00012477|Name=TCONS_00012477|organism=Clytia hemisphaerica|type=transcript|length=1241bp
ttacatttacattttCAAAGCGGTGATAGATATATTATCAAGGTTGATGC
AATCAAAGAACTGGAAGATGCAATGGCGAGGAAATTCGATCATCAATTTG
ATAATCTAAATGTCTACTTTGATGACAAAGAAGAGGGCTGGTGTGTACTG
GATTTTGACGATATATCCCTTCTCTTAGACCGCAAATCCAATACAATAGT
CTGAGAGCCTCCTTCACAGAAAATCATGATGACAGTAATGGGAAAATTGA
TGAAAGTACTGTTTCTAATGTTAATGAAACCATTCTTGACGATCCTGAAG
AAACCAATCCTGAGGATCCTGAAGTAACCATTCCTGATCAAGAAACAAAT
AATCCTCCTGGCCAAAATTAAGTACTGTTTCTTCACCTCATCATTTTGGT
CTCTTGAGTTCTTATTAGATTCACTGTTTGTTTGTCGATCAGTTAGTTCC
ATAAAAGCATCCCTTGTTGAGATTGATTTGTGGCTATCAATAGTCTTATA
GAATTCAGCAGTGAATGTGTAGCTTTATGATGATGAAATCATTTCTTTGT
AGACGTTGGCCTCACCCGTTCATAATACGTGAGCATACGGTGAGGCAAGC
AACACTAGATGCCCTTAATCAAAAGCGGCCACTAAGTCAATCTTCAAGAT
CATGTTTACTTTCCGGTACAGTATATTCAACGCGGTTACCACCAAGTACC
AATTGTAGTGAGTTGTTAGTTTATGTTGAGTTCTTAAAGGCTTAAGAGct
attttctgtaaaaatcaggcAGAATCAGgcaggaaaaatcttttttcgtt
cccaataagtgcacttttgataaatctttgactTCAAGAGCAATTTTAGA
CATGATCAAGCTTAAGATTCAActcaaaacatattttcctggaagaaatc
catgggtactttgaaaaaatgccattttgagaaaattctttTGACCCCAT
GGCTAGAAATCATTGCCTGAAATCacaacatttctaattttaatagattt
taagagCAATTAGCTGGCTTGGCCACAAGTGTcacattgatatttttgta
tatttctgaagtctttatggtcatctttaacttccaattaaaattttcat
gtgaCACTTACGGCCACGCCCTAAAATGGCGGTTAAACATAGCTTTCTGc
tcaatttttgccaatttttggatattttgctcaaatacatgaaaataaaa
tcctgtgaaattttttttgaaaaatcttttttcgttccCAA Run BLAST on NCBI protein sequence of TCONS_00012477-protein >TCONS_00012477-protein ID=TCONS_00012477-protein|Name=TCONS_00012477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MELTDRQTNSESNKNSRDQNDEVKKQYLILARRIICFLIRNGYFRILRIG
FFRIVKNGFINIRNSTFINFPITVIMIFCEGGSQTIVLDLRSKRRDISSK
SSTHQPSSLSSK Run BLAST on NCBI transcript from alignment at sc0000144:467647..468887 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012477 ID=TCONS_00012477|Name=TCONS_00012477|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at sc0000144:467647..468887 (Clytia hemisphaerica)
TTGggaacgaaaaaagatttttcaaaaaaaatttcacaggattttatttt
catgtatttgagcaaaatatccaaaaattggcaaaaattgagCAGAAAGC
TATGTTTAACCGCCATTTTAGGGCGTGGCCGTAAGTGtcacatgaaaatt
ttaattggaagttaaagatgaccataaagacttcagaaatatacaaaaat
atcaatgtgACACTTGTGGCCAAGCCAGCTAATTGctcttaaaatctatt
aaaattagaaatgttgtGATTTCAGGCAATGATTTCTAGCCATGGGGTCA
aaagaattttctcaaaatggcattttttcaaagtacccatggatttcttc
caggaaaatatgttttgagTTGAATCTTAAGCTTGATCATGTCTAAAATT
GCTCTTGAagtcaaagatttatcaaaagtgcacttattgggaacgaaaaa
agatttttcctgcCTGATTCTgcctgatttttacagaaaatagCTCTTAA
GCCTTTAAGAACTCAACATAAACTAACAACTCACTACAATTGGTACTTGG
TGGTAACCGCGTTGAATATACTGTACCGGAAAGTAAACATGATCTTGAAG
ATTGACTTAGTGGCCGCTTTTGATTAAGGGCATCTAGTGTTGCTTGCCTC
ACCGTATGCTCACGTATTATGAACGGGTGAGGCCAACGTCTACAAAGAAA
TGATTTCATCATCATAAAGCTACACATTCACTGCTGAATTCTATAAGACT
ATTGATAGCCACAAATCAATCTCAACAAGGGATGCTTTTATGGAACTAAC
TGATCGACAAACAAACAGTGAATCTAATAAGAACTCAAGAGACCAAAATG
ATGAGGTGAAGAAACAGTACTTAATTTTGGCCAGGAGGATTATTTGTTTC
TTGATCAGGAATGGTTACTTCAGGATCCTCAGGATTGGTTTCTTCAGGAT
CGTCAAGAATGGTTTCATTAACATTAGAAACAGTACTTTCATCAATTTTC
CCATTACTGTCATCATGATTTTCTGTGAAGGAGGCTCTCAGACTATTGTA
TTGGATTTGCGGTCTAAGAGAAGGGATATATCGTCAAAATCCAGTACACA
CCAGCCCTCTTCTTTGTCATCAAAGTAGACATTTAGATTATCAAATTGAT
GATCGAATTTCCTCGCCATTGCATCTTCCAGTTCTTTGATTGCATCAACC
TTGATAATATATCTATCACCGCTTTGaaaatgtaaatgtaa Coding sequence (CDS) from alignment at sc0000144:467647..468887 >TCONS_00012477 ID=TCONS_00012477|Name=TCONS_00012477|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000144:467647..468887 (Clytia hemisphaerica)
ATGGAACTAACTGATCGACAAACAAACAGTGAATCTAATAAGAACTCAAG
AGACCAAAATGATGAGGTGAAGAAACAGTACTTAATTTTGGCCAGGAGGA
TTATTTGTTTCTTGATCAGGAATGGTTACTTCAGGATCCTCAGGATTGGT
TTCTTCAGGATCGTCAAGAATGGTTTCATTAACATTAGAAACAGTACTTT
CATCAATTTTCCCATTACTGTCATCATGATTTTCTGTGAAGGAGGCTCTC
AGACTATTGTATTGGATTTGCGGTCTAAGAGAAGGGATATATCGTCAAAA
TCCAGTACACACCAGCCCTCTTCTTTGTCATCAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012477-exon-sc0000144-1491911889:467647..468887 | TCONS_00012477-exon-sc0000144-1491911889:467647..468887 | Clytia hemisphaerica | exon |
| TCONS_00012477-exon-sc0000144-1510915933:467647..468887 | TCONS_00012477-exon-sc0000144-1510915933:467647..468887 | Clytia hemisphaerica | exon |
| TCONS_00012477-exon-sc0000144-1575043694:467647..468887 | TCONS_00012477-exon-sc0000144-1575043694:467647..468887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:467647..468887 . |
Blast
The following BLAST results are available for this feature:
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