TCONS_00012499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012499
Unique NameTCONS_00012499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012499 ID=TCONS_00012499|Name=TCONS_00012499|organism=Clytia hemisphaerica|type=transcript|length=1178bp
ATTATTAATTGTCAATTATATTTATTGTAAGCTGtgcaaaattatgaaaa
aaaattttccctggtATGAGTCAAAAAGGTCCCAAAAACTAAATATAAAA
GTGCTGTAAAATTGTTATAAAAGTTCTAAGTTTTAAATATCCGTCAATGT
GGGTAGTAATTGTTTCAAATCAAATATcctaaaattatcaaaatccaTCC
AAAGCTTTACATGGTTTGAGAAAATATGTCCATTTTCAAGGTGCTAAATA
ACTTCTTAGCCGAATATGAGCGTGTCTTAAATGATCCTTCCTTTAATTGT
CTGTAAAGTAACCATTATccattttctccaaaaatatttccctAAATGTT
ATCAGCTCCTTTCAAAGCTCAAAGCTTTCGGCAAAGAGTAACTCCATCAG
CGATGTTTAAGAAAGACAATTGAAAACGGTTATCTAATTTAAGTTTCTGA
TTTAACTTGTAGAGAAATTCGGCTGAATGGCGTTGCTCAGGCGTCATTTC
TTGTGTCAAATCTAACACTAAGCCACCTTGCAACATATTATCAAAAGCTA
AAATGCCACCGCTTTTCAACAGCAGTATGGCACGATCTAAATACTTTTCA
TATGAAATTTTATCAGCATCCACATAAATGAAATCGAAGGTCTCCGTTTC
TCCCTTAGAGATCAACTCATCCAAAGATTCCACAGCCGGCCCAATCTTGA
CCACAATTTTATCTTTGACGCCTGCTTTCTCGAAAAAGGGATACCCTTCC
TTAACATAATCCTCGTTAACATCCAGGGCGTAAATAACGCCATCACTTGG
AATGGTAAGGGCGGTGCTCAAGACATTATACCCAGTATAGGTACCAACTT
CAATGCATTTCTTCGCATCTAACATATTCAACAAAAGtcggaaaaattga
atttgacatGGATCAGACACCATCTTAGCCATTGGGACATTCTTGAAAGT
ATACTCACGCAATTCTTTTAAAACAGCAGGCTCTCTCAACGAATTTTCTT
CTACATATTCGTCCGCTGTCCGCGATTTCTTCAAATTATCTTGCTTTGCA
GATTGTTGTTCCTTTGGAGGGGTAGGAGTTGCGGACATATACCGGGCAGC
CAAATTACCGGcaacaaatgacgtcacagCAATGCCAGCGacattttttg
tttttatgtttgtgtTTTTGTCTCTAAA
Run BLAST on NCBI

transcript from alignment at sc0000145:199208..202225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012499 ID=TCONS_00012499|Name=TCONS_00012499|organism=Clytia hemisphaerica|type=transcript|length=3018bp|location=Sequence derived from alignment at sc0000145:199208..202225+ (Clytia hemisphaerica)
ATTATTAATTGTCAATTATATTTATTGTAAGCTGtgcaaaattatgaaaa
aaaattttccctggtATGAGTCAAAAAGGTCCCAAAAACTAAATATAAAA
GTGCTGTAAAATTGTTATAAAAGTTCTAAGTTTTAAATATCCGTCAATGT
GGGTAGTAATTGTTTCAAATCAAATATcctaaaattatcaaaatccaTCC
AAAGCTTTACATGGTTTGAGAAAATATGTCCATTTTCAAGGTGCTAAATA
ACTTCTTAGCCGAATATGAGCGTGTCTTAAATGATCCTTCCTTTAATTGT
CTGTAAAGTAACCATTATccattttctccaaaaatatttccctAAATGTT
ATCAGCTCCTTTCAAAGCTCAAAGCTTTCGGCAAAGAGTAACTCCATCAG
CGATGTTTAAGAAAGACAATTGAAAACGGTTATCTAATTTAAGTTTCTGA
TTTAACTTGTAGAGAAATTCGGCTGAATGGCGTTGCTCAGGCGTCATTTC
TTGTGTCAAATCTAACACTAAGCCACCTTGCAACATATTATCAAAAGCTA
AAATGCCACCGCTTTTCAACAGCAGTATGGCACGATCTAAATACTTTTCA
TATGAAATTTTATCAGCATCCACATAAATGAAATCGAAGGTCTCCGTTTC
TCCCTTAGAGATCAACTCATCCAAAGATTCCACAGCCGGCCCAATCTTGA
CCACAATTTTATCTTTGACGCCTGCTTTCTCGAAAAAGGGATACCCTTCC
TTAACATAATCCTCGTTAACATCCAGGGCGTAAATAACGCCATCACTTGG
AATGGTAAGGGCGGTGCTCAAGACATTATACCCAGTATAGGTACCAACTT
CAATGCATTTCTTCGCATCTAACATATTCAACAAAAGtcggaaaaattga
atttgacatGGATCAGACACCATCTTAGCCATTGGGACATTCTTGAAAGT
ATACTCACGCAATTCTTTTAAAACAGCAGGCTCTCTCAACGAATTTTCTT
CTACATATTCGTCCGCTGTCCGCGATTTCTTCAAATTATCTTGCTTTGCA
GATTGTTGTTCCTTTGGAGGGGTAGGAGTTGCGGACATATACCGGGCAGC
CAAATTACCGGcaacaaatgacgtcacagCAATGCCAGCGGCGATACCAA
GCTCTTTGTTGAGTAAAGAagacatttttatgtttttgtgtTTGTGTTTT
TGTCTCTAAAATGaaaggaaacaaaaattgagttactttgaaattttgcc
attccaaaagttaaatttaaagaaaaacaacgaagttttatttcaaaatt
gagcaaaagcttttcgataaaaaaaaatcttcgatGCTACAAGCGATGAT
TtaatcgaaaagcttttgcgcaattttaaaataaaacttagTTGTTTTTC
GTTAAGTTCAAAAGTTTAGTTACTAACGTAAAATCGGGTGAACAAATTTA
GCACCGGTGAGAAAAATCCAAAACATCTTAAAGCTCCTTCTCAGCAATCT
AAATTACAATTTAATAATACTTTGTAGTCGTTGAATGGAAAAATACTGTA
TAAAAAGGGTATAAATATCTAATAATTTTCTAAATATTGCAATCAACCta
ttaaagatgaaaaaaaagattttagcgCGGTGGATCAACTTGTAAGAGTA
AATTATAATAtgtaaaatttcgcgaaaactATTAACTTCAAGAGGACATT
TTGAAACAATTGAATTACCAAACGAAAATAAGACATTTTTATGCAaattc
cagtcaaaatttgttATTTAGAAGCATATTCAGCAGTTTCTACACGCTTT
ATCGTTATTGACGTCATCAATAGGCGAAAACTCAGAATTGGAAAGCGGCG
GCATGAAAGGGTTGATAAAGTCTATGAAAAAGTGTCAggtcaagtcaaaa
aaattgttatgcaaaataaattaaaaatactaaaaaagtttataaaatta
aaaaaaagaaaacgctaTAGCCCGATTACATTAAAAAAGCCTAGCATAAA
AATTTCATTCACTTACAGTAGTCATATTGTTTAGTTTCTTGGAATGTCTT
TGTTGAGTCACTGAATATACTGCATTAAATGTAAAAAAAGATACCGTGTA
ATCTCGTCCAAAATTTGTACACATCCTCACCAAGAATCTCGTCCAAAATT
CAGATTTAACACCAGCTCCTTCAAAAACACTCAAAGTTTTCGGCAAAGAG
TAAGTCCATCAGCGATGTTTAAGAAAGACAATTGAAAACGTTTatctaat
ttcaatttctgatttAGCTTGTGAATATATTCAGCTCTATGGCGTCGCTC
AGGCGTCATTTCTTGTGTCAAATCGGCCACTCGACCCGCTTGCAACATAT
TATCAAAAGCTAAAATGCCACCGCATCTAAGCAATAGCATAGCACGATCT
AGATACTTTTCATAAGAGGTTTTGTCAGCATCCACATAAATGAAATCGAA
GGTCTCCGTTTCTCCCTTAGAGATCAACTCATCCAAAGATTCCACAGCCG
GCCCAATCTTGACCACAATTTTATCTTTGACGCCAGCTTTCTCGAAAAAG
GGATACCCTTCCTTAACATAATCCTCGTTAATATCCAGGGCGTAAATAAC
GCCATCACTTGGAATGGTAAGGGCGGTGCTCAAGACATTATACCCAGTAT
AGGTACCAACTTCAATGCATTTCTTCGCATCTAACATATTCAACAAAAGt
cggaaaaattgaatttggcaTGGATCAGATACCATATCATAATCTTCAAC
GTTTTTTATAGTATGCTCACGCAATTCTTTCAAAACAGCAGGCTCTCTCA
ACGAATTTTCTTTTACGTATTTGTCCGCTACCCtcgaatttttcaaatca
attcccTGATTTACAGGTTCCTTTGGAGGGGTCGGAGTTGCGGACATATA
CCGGACAGCCAAATTACCGGcaacaaatgacgtcacagCAATGCCAGCGG
CGATACCAAGCTCTTTGTTGAGTAaagaagacattttttgtttttatgtt
tgtgtTTTTGTCTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007027XLOC_007027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012499-exon-sc0000145-1491911889:199208..200347TCONS_00012499-exon-sc0000145-1491911889:199208..200347Clytia hemisphaericaexon
TCONS_00012499-exon-sc0000145-1510915933:199208..200347TCONS_00012499-exon-sc0000145-1510915933:199208..200347Clytia hemisphaericaexon
TCONS_00012499-exon-sc0000145-1575043694:199208..200347TCONS_00012499-exon-sc0000145-1575043694:199208..200347Clytia hemisphaericaexon
TCONS_00012499-exon-sc0000145-1491911889:202188..202225TCONS_00012499-exon-sc0000145-1491911889:202188..202225Clytia hemisphaericaexon
TCONS_00012499-exon-sc0000145-1510915933:202188..202225TCONS_00012499-exon-sc0000145-1510915933:202188..202225Clytia hemisphaericaexon
TCONS_00012499-exon-sc0000145-1575043694:202188..202225TCONS_00012499-exon-sc0000145-1575043694:202188..202225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:199208..202225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.7828	40.4576	47.984	43.7727	25.0192	18.934	22.5836	19.4065	26.8297	25.9421	21.0976	18.4046	14.3373	16.6154	29.5072	33.8302	42.0796	31.0481	13.3983	20.754	13.3528	12.4227	25.6245	22.6008	4.69938	6.52706	22.8762	13.1954	26.825	23.8155
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002935O-MeTrfase_3
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008171O-methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008171 O-methyltransferase activity
Blast
[Close]
BLAST of TCONS_00012499 vs. Swiss-Prot (Human)
Match: CMTD1 (Catechol O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.231e-33
Identity = 77/214 (35.98%), Postives = 124/214 (57.94%), Query Frame = -1 
Query:  372 EYVEENSLREPAVLKELREYTFKNVPMAKMVSDPC-QIQFFRLLLNMLDAKKCIEVGTYTGYNVLSTALTIPSDGVIYALDVNEDYVKEGYPFFEKAGVKDKIVVKIGPAVESLDELISKGETETFDFIYVDADKISYEKYLDRAILLLKSGGILAFDNMLQGGLVLDLTQEMTPEQRHSAEFLYKLNQKLKLDNRFQLSFLNIADGVTLCRKL 1010
            +Y+   S+RE   L+ LR  T +      M++  C Q Q    L  ++ AKK +++GT+TGY+ L+ AL +P+DG +   +V+    + G P + +A  + KI +++ PA+E+LDEL++ GE  TFD   VDADK +   Y +R + LL+ GGILA   +L  G VL       P+   +AE +  LN++++ D R  +S L + DG+TL  K+
Sbjct:   56 QYLLSRSMREHPALRSLRLLTLEQPQGDSMMT--CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ-----PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262
The following BLAST results are available for this feature:
BLAST of TCONS_00012499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CMTD13.231e-3335.98Catechol O-methyltransferase domain-containing pro... [more]
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