TCONS_00012590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012590
Unique NameTCONS_00012590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012590 ID=TCONS_00012590|Name=TCONS_00012590|organism=Clytia hemisphaerica|type=transcript|length=389bp
AAAAACTCTAGAAAAGTCTGGTCTGGTGTTCGTGATATAATCTCAACAAG
GGCTAACTCAGAATCACCCATTTCAATCATCACAGGTGACTCTTTGACAT
CAGATCCAGAGAAAGTAGCCAATTccttcaatgattttttcactACTATA
GCTGATTCTATTCGTGAAAAAATGCCGCCTTCTTACAATCACTTCAGCAG
TTTCATGAAAGATCCAAATCTGCATTTCATCCTCTTAGCACCAACCACTT
ATCAAGAAATTGCGAAGGTGATTGGCTCTTTCTCAATAAATAAAGCAAGT
GGTCCTCGTAGTATTCCTATAAAAATCCTTAAACTTTTAAGACTTGATAT
TTCTGTGCCAATATCGGCGCTGATAAACTACTCCTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00012590-protein

>TCONS_00012590-protein ID=TCONS_00012590-protein|Name=TCONS_00012590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
KNSRKVWSGVRDIISTRANSESPISIITGDSLTSDPEKVANSFNDFFTTI
ADSIREKMPPSYNHFSSFMKDPNLHFILLAPTTYQEIAKVIGSFSINKAS
GPRSIPIKILKLLRLDISVPISALINYSF
Run BLAST on NCBI

transcript from alignment at sc0000145:413809..414197

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012590 ID=TCONS_00012590|Name=TCONS_00012590|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0000145:413809..414197 (Clytia hemisphaerica)
AGAAAGGAGTAGTTTATCAGCGCCGATATTGGCACAGAAATATCAAGTCT
TAAAAGTTTAAGGATTTTTATAGGAATACTACGAGGACCACTTGCTTTAT
TTATTGAGAAAGAGCCAATCACCTTCGCAATTTCTTGATAAGTGGTTGGT
GCTAAGAGGATGAAATGCAGATTTGGATCTTTCATGAAACTGCTGAAGTG
ATTGTAAGAAGGCGGCATTTTTTCACGAATAGAATCAGCTATAGTagtga
aaaaatcattgaaggAATTGGCTACTTTCTCTGGATCTGATGTCAAAGAG
TCACCTGTGATGATTGAAATGGGTGATTCTGAGTTAGCCCTTGTTGAGAT
TATATCACGAACACCAGACCAGACTTTTCTAGAGTTTTT

Coding sequence (CDS) from alignment at sc0000145:413809..414197

>TCONS_00012590 ID=TCONS_00012590|Name=TCONS_00012590|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000145:413809..414197 (Clytia hemisphaerica)
AAAGGAGTAGTTTATCAGCGCCGATATTGGCACAGAAATATCAAGTCTTA
AAAGTTTAAGGATTTTTATAGGAATACTACGAGGACCACTTGCTTTATTT
ATTGAGAAAGAGCCAATCACCTTCGCAATTTCTTGATAAGTGGTTGGTGC
TAAGAGGATGAAATGCAGATTTGGATCTTTCATGAAACTGCTGAAGTGAT
TGTAAGAAGGCGGCATTTTTTCACGAATAGAATCAGCTATAGTagtgaaa
aaatcattgaaggAATTGGCTACTTTCTCTGGATCTGATGTCAAAGAGTC
ACCTGTGATGATTGAAATGGGTGATTCTGAGTTAGCCCTTGTTGAGATTA
TATCACGAACACCAGACCAGACTTTTCTAGAGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007066XLOC_007066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012590-exon-sc0000145-1491911889:413809..414197TCONS_00012590-exon-sc0000145-1491911889:413809..414197Clytia hemisphaericaexon
TCONS_00012590-exon-sc0000145-1510915933:413809..414197TCONS_00012590-exon-sc0000145-1510915933:413809..414197Clytia hemisphaericaexon
TCONS_00012590-exon-sc0000145-1575043694:413809..414197TCONS_00012590-exon-sc0000145-1575043694:413809..414197Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012590-proteinTCONS_00012590-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:413809..414197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.28895	5.27377	11.0919	9.82126	6.24674	7.24083	5.57729	9.33912	3.86339	4.79657	2.80936	4.49738	3.46239	3.67345	2.44255	4.65042	3.87329	2.96857	3.88176	3.30808	8.19684	9.78704	0.721293	2.53763	6.80266	8.37657	5.16336	6.57055	4.93604	2.48914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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