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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012593 ID=TCONS_00012593|Name=TCONS_00012593|organism=Clytia hemisphaerica|type=transcript|length=1506bp
ACGCGGTATGCTACGCCTACTTAATGGATTGCAAGTTGAAATAAAATGTC
TGGTAATTTGTGATAACTcgagaaacaaaaaagtttgaaattttctcaat
AAATTTTATTGAGCTTTTAGAAGATAAGATAATAAGCTTGTCAAAAACTT
GTCAGGATATCATAATTGGTGGTTTGTTTGTAATAGACGTTATCGATTAG
AACTATTGGTTTGTGTAAAACGACTCTAGATCTTTCAGTGCTGATGATTT
CGATTCCACTAAATAAATAGATCAGAACATATTGAGAACATACTGAGAAC
ATATTGAGAACACAACTTTTTAAGGAAATGTCTGCAATTAGACTGGGATT
GTGTATCCCGGAGAGGAAGAAATCAGCTATTTGTTTACCAGAACGTATCG
AAGCACTTTGTGATGAAAAGAATATAAAGATTATAGAAATTGACATAGAT
GCAGATTTAGAATCACAAGGACCATTTGATGTTTTGTTGCATAAAATAAT
TGACTATTACAATGTGTTTCCAATTCAAGAAGCTGATGAAAAAGTTAAAC
GCCTGGTATCATATGCAACCCGACATTCAAAAATGGTTGTATTAGATGAT
TTTGATTGGTGTCTCAGACTGACTAAAAGAAAATCGATGATCGAGGTATT
TGAACATTGTCAATTCATAATGGATGATATTAAagtattctttccaaaaa
ctGTAGAACTGACTGCTGAAATGTCGTCCTCTGACATTGAACTTGTCATA
AGGTACACGGATATCAGGTTACCAGTTGTTGCCAAGCCTTTTAGCGCGGC
TCTAGATGATGGTAGTCATAATATGGCGTTAGTTTTCTCAGAAGAAAGAT
TAATCGACTTGAAACGACCGTGTTTGATTCAGGAATTTTGTAATCATTCA
GGTGTATACTACAAAGTTTTTGTTGTTGGAGACCGATTTAATATTTGTGA
AAATCCGTCTATAAGAGATTTTCATCAAAAGGATAACGATTGTCCGacaa
tattttttaatacgcgaaCAATAGCGAAAGTCGGACAACCGTTTAACTCG
AATCTACACGATAAAGATCCGAATGAACGCGATTGGTTATCATGTGATCA
GCAACCAAACATGCTTAATCGGAATTTAATTAAAGAAATTATACAACGTA
TGCGCCAAAAGACTGGAATCCAATTATTTAAATTCGATTTGATCGTTGAA
CGGGACACAGGACATTATGGTTTGATTGACATGAATCAGTTTCCATCATA
TCGAGGAATCGattcaaaacattttcccaaacaCCTCGTTGAACTGATCA
CCAACTATCGGTAAAATATtttcgattctttttttttggaacagaTATTG
AGTAAAATCAATGGGGCTATGGACAAGCACTAGCTATAACTTTCAATTCA
TCTAAATTAGTGGACGTAGGGCCTGTTATCGAATGGTCAATTGCCTAGTA
CTTCAAGATGTACCTTCCCGATTATctttaaattatgaaattataaaGGG
CACGGA Run BLAST on NCBI protein sequence of inositol tetrakisphosphate 1 kinase protein >TCONS_00012593-protein ID=TCONS_00012593-protein|Name=inositol tetrakisphosphate 1 kinase protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MSAIRLGLCIPERKKSAICLPERIEALCDEKNIKIIEIDIDADLESQGPF
DVLLHKIIDYYNVFPIQEADEKVKRLVSYATRHSKMVVLDDFDWCLRLTK
RKSMIEVFEHCQFIMDDIKVFFPKTVELTAEMSSSDIELVIRYTDIRLPV
VAKPFSAALDDGSHNMALVFSEERLIDLKRPCLIQEFCNHSGVYYKVFVV
GDRFNICENPSIRDFHQKDNDCPTIFFNTRTIAKVGQPFNSNLHDKDPNE
RDWLSCDQQPNMLNRNLIKEIIQRMRQKTGIQLFKFDLIVERDTGHYGLI
DMNQFPSYRGIDSKHFPKHLVELITNYR Run BLAST on NCBI transcript from alignment at sc0000145:494415..495920 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012593 ID=TCONS_00012593|Name=TCONS_00012593|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at sc0000145:494415..495920 (Clytia hemisphaerica)
TCCGTGCCCtttataatttcataatttaaagATAATCGGGAAGGTACATC
TTGAAGTACTAGGCAATTGACCATTCGATAACAGGCCCTACGTCCACTAA
TTTAGATGAATTGAAAGTTATAGCTAGTGCTTGTCCATAGCCCCATTGAT
TTTACTCAATAtctgttccaaaaaaaaagaatcgaaaATATTTTACCGAT
AGTTGGTGATCAGTTCAACGAGGtgtttgggaaaatgttttgaatCGATT
CCTCGATATGATGGAAACTGATTCATGTCAATCAAACCATAATGTCCTGT
GTCCCGTTCAACGATCAAATCGAATTTAAATAATTGGATTCCAGTCTTTT
GGCGCATACGTTGTATAATTTCTTTAATTAAATTCCGATTAAGCATGTTT
GGTTGCTGATCACATGATAACCAATCGCGTTCATTCGGATCTTTATCGTG
TAGATTCGAGTTAAACGGTTGTCCGACTTTCGCTATTGttcgcgtattaa
aaaatattgtCGGACAATCGTTATCCTTTTGATGAAAATCTCTTATAGAC
GGATTTTCACAAATATTAAATCGGTCTCCAACAACAAAAACTTTGTAGTA
TACACCTGAATGATTACAAAATTCCTGAATCAAACACGGTCGTTTCAAGT
CGATTAATCTTTCTTCTGAGAAAACTAACGCCATATTATGACTACCATCA
TCTAGAGCCGCGCTAAAAGGCTTGGCAACAACTGGTAACCTGATATCCGT
GTACCTTATGACAAGTTCAATGTCAGAGGACGACATTTCAGCAGTCAGTT
CTACagtttttggaaagaatactTTAATATCATCCATTATGAATTGACAA
TGTTCAAATACCTCGATCATCGATTTTCTTTTAGTCAGTCTGAGACACCA
ATCAAAATCATCTAATACAACCATTTTTGAATGTCGGGTTGCATATGATA
CCAGGCGTTTAACTTTTTCATCAGCTTCTTGAATTGGAAACACATTGTAA
TAGTCAATTATTTTATGCAACAAAACATCAAATGGTCCTTGTGATTCTAA
ATCTGCATCTATGTCAATTTCTATAATCTTTATATTCTTTTCATCACAAA
GTGCTTCGATACGTTCTGGTAAACAAATAGCTGATTTCTTCCTCTCCGGG
ATACACAATCCCAGTCTAATTGCAGACATTTCCTTAAAAAGTTGTGTTCT
CAATATGTTCTCAGTATGTTCTCAATATGTTCTGATCTATTTATTTAGTG
GAATCGAAATCATCAGCACTGAAAGATCTAGAGTCGTTTTACACAAACCA
ATAGTTCTAATCGATAACGTCTATTACAAACAAACCACCAATTATGATAT
CCTGACAAGTTTTTGACAAGCTTATTATCTTATCTTCTAAAAGCTCAATA
AAATTTattgagaaaatttcaaacttttttgtttctcgAGTTATCACAAA
TTACCAGACATTTTATTTCAACTTGCAATCCATTAAGTAGGCGTAGCATA
CCGCGT Coding sequence (CDS) from alignment at sc0000145:494415..495920 >TCONS_00012593 ID=TCONS_00012593|Name=TCONS_00012593|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at sc0000145:494415..495920 (Clytia hemisphaerica)
TTACCGATAGTTGGTGATCAGTTCAACGAGGtgtttgggaaaatgttttg
aatCGATTCCTCGATATGATGGAAACTGATTCATGTCAATCAAACCATAA
TGTCCTGTGTCCCGTTCAACGATCAAATCGAATTTAAATAATTGGATTCC
AGTCTTTTGGCGCATACGTTGTATAATTTCTTTAATTAAATTCCGATTAA
GCATGTTTGGTTGCTGATCACATGATAACCAATCGCGTTCATTCGGATCT
TTATCGTGTAGATTCGAGTTAAACGGTTGTCCGACTTTCGCTATTGttcg
cgtattaaaaaatattgtCGGACAATCGTTATCCTTTTGATGAAAATCTC
TTATAGACGGATTTTCACAAATATTAAATCGGTCTCCAACAACAAAAACT
TTGTAGTATACACCTGAATGATTACAAAATTCCTGAATCAAACACGGTCG
TTTCAAGTCGATTAATCTTTCTTCTGAGAAAACTAACGCCATATTATGAC
TACCATCATCTAGAGCCGCGCTAAAAGGCTTGGCAACAACTGGTAACCTG
ATATCCGTGTACCTTATGACAAGTTCAATGTCAGAGGACGACATTTCAGC
AGTCAGTTCTACagtttttggaaagaatactTTAATATCATCCATTATGA
ATTGACAATGTTCAAATACCTCGATCATCGATTTTCTTTTAGTCAGTCTG
AGACACCAATCAAAATCATCTAATACAACCATTTTTGAATGTCGGGTTGC
ATATGATACCAGGCGTTTAACTTTTTCATCAGCTTCTTGAATTGGAAACA
CATTGTAATAGTCAATTATTTTATGCAACAAAACATCAAATGGTCCTTGT
GATTCTAAATCTGCATCTATGTCAATTTCTATAATCTTTATATTCTTTTC
ATCACAAAGTGCTTCGATACGTTCTGGTAAACAAATAGCTGATTTCTTCC
TCTCCGGGATACACAATCCCAGTCTAATTGCAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012593-exon-sc0000145-1491911889:494415..495920 | TCONS_00012593-exon-sc0000145-1491911889:494415..495920 | Clytia hemisphaerica | exon |
| TCONS_00012593-exon-sc0000145-1510915933:494415..495920 | TCONS_00012593-exon-sc0000145-1510915933:494415..495920 | Clytia hemisphaerica | exon |
| TCONS_00012593-exon-sc0000145-1575043694:494415..495920 | TCONS_00012593-exon-sc0000145-1575043694:494415..495920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:494415..495920 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008656 | Inositol_tetrakis-P_1-kinase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0052726 | inositol-1,3,4-trisphosphate 5-kinase activity |
| GO:0052725 | inositol-1,3,4-trisphosphate 6-kinase activity |
| GO:0005524 | ATP binding |
| GO:0000287 | magnesium ion binding |
| GO:0047325 | inositol tetrakisphosphate 1-kinase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0032957 | inositol trisphosphate metabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0032957 |
inositol trisphosphate metabolic process |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0052726 |
inositol-1,3,4-trisphosphate 5-kinase activity |
| molecular_function |
GO:0052725 |
inositol-1,3,4-trisphosphate 6-kinase activity |
| molecular_function |
GO:0047325 |
inositol tetrakisphosphate 1-kinase activity |
| molecular_function |
GO:0000287 |
magnesium ion binding |
Blast
BLAST of TCONS_00012593 vs. Swiss-Prot (Human)
Match: ITPK1 (Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 3.282e-38 Identity = 94/318 (29.56%), Postives = 163/318 (51.26%), Query Frame = 1
Query: 340 RLGLCIPERKKSAICLPERIEALCXXXXXXXXXXXXXXXLESQGPFDVLLHKIIDYYNVFPIQEAD-------EKVKRLVSYATRHSKMVVLDDFDWCLRLTKRKSMIEVFEHCQFIMDDIKVFFPKTVELTAEMSSSDIELVIRYTDIRLPVVAKPFSAALDDGSHNMALVFSEERLIDLKRPCLIQEFCNHSGVYYKVFVVGDRFNICENPSIRDFHQKDNDCPTIFFNTRTIAKVGQPFNSNLHDKDPNERDWLSCDQQPNMLNR---NLIKEIIQRMRQKTGIQLFKFDLIVERDTGHYGLIDMNQFPSYRGID 1263
R+G + E+K + E LC ++ ++++++++ +E QGP DV++HK+ D I EAD E V R Y H + +VLD L R E+ + M+D ++ P +ELT+ + D ++ + P + K A SH MA+VF++E L ++ PC++Q F NH+ V YKVFVVG+ + + + PS+++F +D +IFFN+ ++K P +S++ D+ + R +I+E+ + +RQ G+ LF D+I+ TG + +ID+N FP Y G+
Sbjct: 9 RVGYWLSEKKIKKLNFQAFAE-LCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDV-----ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTS-LCGDDTMRLLEKNGLTFPFICKT-RVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSK---PESSSV---------LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVS 306
The following BLAST results are available for this feature:
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