TCONS_00012608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012608
Unique NameTCONS_00012608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012608 ID=TCONS_00012608|Name=TCONS_00012608|organism=Clytia hemisphaerica|type=transcript|length=2437bp
ttcttttaggacCTGGAAATGTGccTGTTACCGATTCAAATGATATCACC
TTGAATGTCAATGGGCATAAACGTCGAAACAGCTACGAGGGACGAGGTGA
CGGCCCTGGAGAAGACTTTTTGGATATGTTATTGAAATCCCAGGGTTCAC
GACTCGACGACCAGCGAGTAGACTTCCCCAAACAACGTGTATCAAGCACC
AATGGCACAAGgccatcaaaaacaaaatcatctACCAAAAACTCTAAAAA
GAATTCCAGTAAAAAACAATCGGCCAAACCCGAACACAGTAAGGAGGGTT
TTATGGATCTAGTTGCTAGGCTACAAGGCGATCGTATGGATGAGCAAAGA
TGCTCGTTACCAGAGCTACCAGGACTTGTAACAGAAgcaaaaaagaagCT
AATTGAGAACcagaaacaacaacaacagcaaaaaCCGAACCAAGAAGTTC
CTGATGATGCTTTCCTTGACATGCTCATGAGGTGTCAGGCATCTCGTATC
AACGATCAACGAGTAGAATTCCCTCCTATCCCGCGCGGTCCGACCGTTCC
CGATGAAGATTTCTTCAACTTGATCGCACGACTTCAATCGAAGAGAATCG
ATACACAACGAGTGAGCTTTGATACGAGGAAATATAGTTGCTGAAGTTGG
TGATTTTATGTTTATCAGGATGGGAAGTAACATTGCCCACATATAACTGA
ATCAGTATTGAGGGTATGATGACTTGGAGTAACCTTGTATTTTTTGGGTA
TCTGGCTTCATCATCGAGCCTCGCCATCTGGTCAAGCTATCGAATCCTTT
TAACNCTGGCTTCATCTTCGAGCCTCGCCATCTGGTAAAAGCTATGGAAT
GCTATTAACCTTGAACCATATTTTGGATTTGGGGAATGGATAACGGATTA
TAATGATGTATTGATGAAGTAAAGCCCGTTTTTCAAGCATAAAATGCGAC
TTTCTTCACGAACATATTCATTGAGCAAGAGATTAGATGTTTTAGAACGT
TTTCTCTGTGTTTAGGTGTTTTAGAAAGTACATacaatttaattcaattt
taatacttttaaaaactatttaacggtcaaaattattttattttatagtt
aGCCTTTTTTCGGTTTTCTgattatttatcattttcaaggAAGTGGACAA
ATTCATCGGTATTTTCAGCTTCTTTTCATTTATGAGTGaaagtagagagt
ctatcaccattaGTGTTAGTCTTATCTAGATGGTAAGTGaatgtataccg
agtttatccTTCTACACCTAcaattggtagtgtgaaggtttcgattGCAG
ACTTGCACTGCActgcaatggactgtgttcgaatgcAAAGCATTTCCAGG
CAgagtgttagggaaatatggttATAGACTCTCTGCAATCACTCTTTTCT
CAATCTGGCTGCATgagcagatgtagaacgataaactcggtatacatCTT
TCCATTTGAAAGAGGCTAGATTGATTTATTGTTGCGAATCTTAAAGCGTT
CTTTCCCAATACATAGTTAACTCTTGTGATTAGTTAGATTTTCTGAACAG
TTTTCATTGGTAATGCCAACATGctcagtagcgtagccaagagaggcgca
aaatttgtgtaggagggCAGTTTTTATGACACTGAAAATATCTATTCACG
GTATTAATAAATAATTACAGTGatataaaaatctgctctcctacaccaAT
TTTGCGctcctcttggctacgctactggcTGAAGGAATCTCAAGTTTGAG
CTAGAGCCTAATTTAAGTCCAACAAATTGCTTATATCTAATTTGTAGTTA
TTTCTTTGTAATTATTATTCTAttgttcatttttcatgtcggttttttaa
attattattcTGAACCTTTTAATTAtaacaattttagaaaaattatcatt
gtcaattattatttttataccATTGTATCATAGTGTTGAAGcagagtatt
ttttttttgttctttttccttCCCTCTCagaatgggctattccagaaaaa
gttTGTACCCCCTTTATTGGGGaggtcttttttatttttcaggagcccct
tggatttttttatcccattgttttggaccaccctggatttttgacctagt
TATgctaaccaccctggattttcaacccgattttactgaccaacctggat
tttttcattcaaaaaaccaatccaacctggattttttattttccaaacca
CCTTGTACGTCACACATCCTTCACATAGGGgttacagactatttctggaa
tagcccaatcctCTCGCATACATAGGTatatgtttttattattttgtagc
TAGTTTTTAATAACTTCGCCATATCTTTCCTATGTTTTTGCTTGTATATA
TTCCAAATTTCTCGTGTCAGTATATAAAATACTtgtgaaaatggaaaaat
tcagAAGTGCCTTTGAATTTTACGAGTTTTCTCGGTG
Run BLAST on NCBI

transcript from alignment at sc0000146:78929..83726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012608 ID=TCONS_00012608|Name=TCONS_00012608|organism=Clytia hemisphaerica|type=transcript|length=4798bp|location=Sequence derived from alignment at sc0000146:78929..83726+ (Clytia hemisphaerica)
ttcttttaggacCTGGAAATGTGGTAAGTTGGATGcttcagttttttttc
tcttgATATCTGTAATATCCCCTTGTCTCGCTCAACAAAGCTTAAAAAGG
CTTGACGAAAGCTTTTCATCGGTGTGTCTATAtctctaaaaagttttttt
tggcgTAAATGGGCCATCCATACAGGAGGAGTCtaaaaagaatgtttttt
tcatttttccagtgggtaaaagactgattttagtccGTCCAGCGTCGTAT
TAAGATATGAAAAGAACCTTTTCATTGTTgcaaaattttgtcattttcca
ggggggtaTCCATACATTTTtatgaatctttttttttttacttgaaaggg
ttcgtccacccctctgtatggaaatttaatgtaaTGGCCCAATGATCATA
ACACATAACAGCCTGACCTTtattatattttgtatttttttttttgctga
aattaatactgttttcttcttcttttttcagccTGTTACCGATTCAAATG
ATATCACCTTGAATGTCAATGGGCATAAAGTAAGTTTAACCAGCCAATAT
GTATATGTCACTTTATACTTTGTGCTAGCCAAAACCAATAACAGTGCTCA
TGTTAATGATAACAGAGCTTTATACTAATTTGAGTAAGGAAAACGATTTA
GTTTAATTTCACACTCAAAGTTTCATTTCCATCCAAgatggcaatcttca
gtgaTTCAGTGATTCGAACTAATATGTCATTTTATACCAAACTGTTGCCG
CTATCCATCATTAAgtcattgtaaaggaaatacAATTTGTTAtaactttt
caaagattttaatcTTATCAAATCTTTACTTCTAGCGTCGAAACAGCTAC
GAGGGACGAGGTGACGGCCCTGGAGAAGACTTTTTGGATATGTTATTGAA
ATCCCAGGGTTCACGACTCGACGACCAGCGAGTAGACTTCCCCAAACAAC
GTGTATCAAGCACCAATGGCACAAGgccatcaaaaacaaaatcatctACC
AAAAACTCTAAAAAGAATTCCAGTAAAAAACAATCGGCCAAACCCGAACA
CAGTAAGGAGGGTTTTATGGATCTAGTTGCTAGGCTACAAGGCGATCGTA
TGGATGAGCAAAGATGCTCGTTACCAGAGCTACCAGGACTTGTAACAGAA
ggtattttattaaattattctaTTTTGGAATCCTAAAAAAGTTCCgcaaa
atattaaattatttaaaatgaatttcaatGACCAAGACCGTTAGTCGAAA
TTATTTATGAgattaaaagtaaataaatttaTTAACCTAGTAACTTAGGC
AACATCACCTTTTACTTAGGACAAAAATAAGATGTTTCCTGTGCCACACT
TAAGTAGTTCTAGGGTCATTCGAAAACCTGACCTACTTCTGTGGCCCGAT
CTTATGGCCTTCCCTATGGCCTACCTTATGGCCCACTTCCGAAAATGTGG
AAACAATTCTAAGGTTGGCCTTTGTTTTGAGACTAAAATAAGTTTGAGTC
TGCATTTTATACACCTGATTTTGCGTGCTTTTGAATCCttgtaatttgat
tgacataaTGAAGAGATGTcagtaatttgattgacataaTGAAGAAATGT
cagtaatttgattgacataaTAAAGAGATGTcagtaatttgattgacata
ataaagagattttagtaatttgattgacataaTGAAGAGAGAATCATAAC
ACAATGAGAACACCCGTTGCCGTCAGATGCTAAAGGTCGCTGTTAAGCAT
CTTCGGGTCGTGATAGTACTTGGATTGGGGACCGCCTGGGATCTCCCGGT
GTTATGGGAGCATTAAGATTGATTGAATTGATTGAGCAGAAAGttttaat
cttatttcaatGATTCTACGCCCAGTTTAGGTAATGAGTTTTAAGGATTT
CAcctcaaataaaaatttgtagcttttttttttgggacacactgtatttt
ctatacatgttttttttataagcaaatgtCTGTCCCTATATAATGTAATA
ATATGATTAGCCTTCTCTTGTTCTCAAAAAATAGAGCTATTGTTTCGGTA
CCAAAAagtgagcctgcatatgcttttaaacgttatgcttgtgaaagaaa
aaacatgtataattcttacattttgttattaattttagcaaaaaagaagC
TAATTGAGAACcagaaacaacaacaacagcaaaaaCCGAACCAAGAAGTT
CCTGATGATGCTTTCCTTGACATGCTCATGAGGTGTCAGGTAAGTTCatt
gttacacgttttttatataagaacaaactatataagaacataaggcttcg
attgccaaaatgttaagaacaagttaagaacattttaaggctttggagac
tcaAAAAGACCTATCTACTTAGGAAATCGcataaaaatactcacaaaatg
gtgaaaatgacaacatgttaagaacatttttaggcttaaaactcaaaaag
ttaagaacatccgagggcttcaaaagttttgaatgttcttaaaaaaaaca
tgtaatgttataaaaattttccagttaaTTTCTTTACGTAGCCTAACATG
TCTCATTCAACAGTTATGCAAACCAAATTTGctacaaattttttctaaat
atgTGAGTCAGTTCAAGTCCAGTTGAAGACAGTTCCCCTTCCCCAAAAAC
AATGTTGTTCAAGAGAACGAGCTGTTGTTGCATCTGGCATTGTGTATTGG
GGGAGGGTGATCGGATTTTTTTGGTAGATATTTTGACTGTCGATATTTTG
CAAAAGATGTCAGCCTTCTTTCTTCTTCGCAGTTTGCAAAGATTATCAGA
CAACCTTTTAACACAGATATGTTAACCGATATAACCTCTCCTTGTTTAGG
CATCTCGTATCAACGATCAACGAGTAGAATTCCCTCCTATCCCGCGCGGT
CCGACCGTTCCCGATGAAGATTTCTTCAACTTGATCGCACGACTTCAATC
GAAGAGAATCGATACACAACGAGTGAGCTTTGATACGAGGAAATATAGTT
GCTGAAGTTGGTGATTTTATGTTTATCAGGATGGGAAGTAACATTGCCCA
CATATAACTGAATCAGTATTGAGGGTATGATGACTTGGAGTAACCTTGTA
TTTTTTGGGTATCTGGCTTCATCATCGAGCCTCGCCATCTGGTCAAGCTA
TCGAATCCTTTTAACNCTGGCTTCATCTTCGAGCCTCGCCATCTGGTAAA
AGCTATGGAATGCTATTAACCTTGAACCATATTTTGGATTTGGGGAATGG
ATAACGGATTATAATGATGTATTGATGAAGTAAAGCCCGTTTTTCAAGCA
TAAAATGCGACTTTCTTCACGAACATATTCATTGAGCAAGAGATTAGATG
TTTTAGAACGTTTTCTCTGTGTTTAGGTGTTTTAGAAAGTACATacaatt
taattcaattttaatacttttaaaaactatttaacggtcaaaattatttt
attttatagttaGCCTTTTTTCGGTTTTCTgattatttatcattttcaag
gAAGTGGACAAATTCATCGGTATTTTCAGCTTCTTTTCATTTATGAGTGa
aagtagagagtctatcaccattaGTGTTAGTCTTATCTAGATGGTAAGTG
aatgtataccgagtttatccTTCTACACCTAcaattggtagtgtgaaggt
ttcgattGCAGACTTGCACTGCActgcaatggactgtgttcgaatgcAAA
GCATTTCCAGGCAgagtgttagggaaatatggttATAGACTCTCTGCAAT
CACTCTTTTCTCAATCTGGCTGCATgagcagatgtagaacgataaactcg
gtatacatCTTTCCATTTGAAAGAGGCTAGATTGATTTATTGTTGCGAAT
CTTAAAGCGTTCTTTCCCAATACATAGTTAACTCTTGTGATTAGTTAGAT
TTTCTGAACAGTTTTCATTGGTAATGCCAACATGctcagtagcgtagcca
agagaggcgcaaaatttgtgtaggagggCAGTTTTTATGACACTGAAAAT
ATCTATTCACGGTATTAATAAATAATTACAGTGatataaaaatctgctct
cctacaccaATTTTGCGctcctcttggctacgctactggcTGAAGGAATC
TCAAGTTTGAGCTAGAGCCTAATTTAAGTCCAACAAATTGCTTATATCTA
ATTTGTAGTTATTTCTTTGTAATTATTATTCTAttgttcatttttcatgt
cggttttttaaattattattcTGAACCTTTTAATTAtaacaattttagaa
aaattatcattgtcaattattatttttataccATTGTATCATAGTGTTGA
AGcagagtattttttttttgttctttttccttCCCTCTCagaatgggcta
ttccagaaaaagttTGTACCCCCTTTATTGGGGaggtcttttttattttt
caggagccccttggatttttttatcccattgttttggaccaccctggatt
tttgacctagtTATgctaaccaccctggattttcaacccgattttactga
ccaacctggattttttcattcaaaaaaccaatccaacctggattttttat
tttccaaaccaCCTTGTACGTCACACATCCTTCACATAGGGgttacagac
tatttctggaatagcccaatcctCTCGCATACATAGGTatatgtttttat
tattttgtagcTAGTTTTTAATAACTTCGCCATATCTTTCCTATGTTTTT
GCTTGTATATATTCCAAATTTCTCGTGTCAGTATATAAAATACTtgtgaa
aatggaaaaattcagAAGTGCCTTTGAATTTTACGAGTTTTCTCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007076XLOC_007076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012608-exon-sc0000146-1491911889:78929..78951TCONS_00012608-exon-sc0000146-1491911889:78929..78951Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1510915933:78929..78951TCONS_00012608-exon-sc0000146-1510915933:78929..78951Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1575043694:78929..78951TCONS_00012608-exon-sc0000146-1575043694:78929..78951Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1491911889:79410..79457TCONS_00012608-exon-sc0000146-1491911889:79410..79457Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1510915933:79410..79457TCONS_00012608-exon-sc0000146-1510915933:79410..79457Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1575043694:79410..79457TCONS_00012608-exon-sc0000146-1575043694:79410..79457Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1491911889:79764..80079TCONS_00012608-exon-sc0000146-1491911889:79764..80079Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1510915933:79764..80079TCONS_00012608-exon-sc0000146-1510915933:79764..80079Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1575043694:79764..80079TCONS_00012608-exon-sc0000146-1575043694:79764..80079Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1491911889:81067..81167TCONS_00012608-exon-sc0000146-1491911889:81067..81167Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1510915933:81067..81167TCONS_00012608-exon-sc0000146-1510915933:81067..81167Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1575043694:81067..81167TCONS_00012608-exon-sc0000146-1575043694:81067..81167Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1491911889:81778..83726TCONS_00012608-exon-sc0000146-1491911889:81778..83726Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1510915933:81778..83726TCONS_00012608-exon-sc0000146-1510915933:81778..83726Clytia hemisphaericaexon
TCONS_00012608-exon-sc0000146-1575043694:81778..83726TCONS_00012608-exon-sc0000146-1575043694:81778..83726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:78929..83726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.564298	0.414608	0	0	10.896	7.89028	9.41484	10.3715	7.23456	9.25013	5.36636	6.4309	9.88489	9.2033	3.80454	3.78594	7.85624	6.99628	10.7562	9.20493	6.47939	7.19994	3.7075	5.73412	9.0621	9.81934	5.73542	6.4673	4.50027	3.56432
Blast
[Close]
BLAST of TCONS_00012608 vs. Swiss-Prot (Human)
Match: GPSM1 (G-protein-signaling modulator 1 OS=Homo sapiens GN=GPSM1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.258e-19
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  111 EDFLDMLLKSQGSRLDDQRVDFP-KQRVSSTNGTRPXXXXXXXXXXXXXXXXXXXAKPEHSKEGFMDLVARLQGDRMDEQRCSLPELPGL-VTEAXXXXXXXXXXXXXXXXXXXVPDDAFLDMLMRCQASRINDQRVEFPP---IPRGPTVPDEDFFNLIARLQSKRIDTQRV 614
            E F D+L K Q SR+DDQR      Q  ++     P+      + S         A P+   E F DL+A  Q  R+D+QR S+  LPGL +T +    +    + Q+       P D F +ML++ Q+SRI+DQR   PP   +PRGPT+PDEDFF+LI R+Q+KR+D QRV
Sbjct:  496 ECFFDLLTKFQSSRMDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMT-------ASPQ--TEEFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGHLRGHGEPQE-------PGDDFFNMLIKYQSSRIDDQRC--PPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRV 650
The following BLAST results are available for this feature:
BLAST of TCONS_00012608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPSM13.258e-1939.88G-protein-signaling modulator 1 OS=Homo sapiens GN... [more]
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