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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012615 ID=TCONS_00012615|Name=TCONS_00012615|organism=Clytia hemisphaerica|type=transcript|length=3745bpRun BLAST on NCBI protein sequence of TCONS_00012615-protein >TCONS_00012615-protein ID=TCONS_00012615-protein|Name=TCONS_00012615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp MAKKSINFNTITLQELEKIPGIGKFKAQSLVDERNHRLFKNINDLIKVEGRun BLAST on NCBI transcript from alignment at sc0000146:128025..145563+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012615 ID=TCONS_00012615|Name=TCONS_00012615|organism=Clytia hemisphaerica|type=transcript|length=17539bp|location=Sequence derived from alignment at sc0000146:128025..145563+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000146:128025..145563+ >TCONS_00012615 ID=TCONS_00012615|Name=TCONS_00012615|organism=Clytia hemisphaerica|type=CDS|length=7275bp|location=Sequence derived from alignment at sc0000146:128025..145563+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012615 vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1) HSP 1 Score: 439.884 bits (1130), Expect = 9.812e-138 Identity = 221/377 (58.62%), Postives = 271/377 (71.88%), Query Frame = 3
Query: 396 TSSSKIVPNVENALCNRTIPSCDSPGKAVRSRLQSETAKPPDGLPDWLNKFHDWSRDERLIALNDLIGLCDMSVVRHMMAKIEPHFQRDFISLLPKELALYVLSFLEPKDLSNAARTCRYWRILGEDNLLWKEKCHEYQLFYPLSDLLEEGKVDKKASQPNEAPYKELFAYCHKLERNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIGHAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLTGHSNRVW---------LSGYFDTCL 1499
TS++ +VP + + + G+ R R+ S +PP GL +WL F WS E+L+AL++LI C+ + V+HMM IEP FQRDFISLLPKELALYVLSFLEPKDL AA+TCRYWRIL EDNLLW+EKC E + PL ++ KV K +P+K + H+++ NWR L+ L+GHDDHV+TCLQF G RIVS SDDNTLKVWSA TG +RTLVGHTGGVWSSQ+ NI++SGSTDRTL+VWNA++GECIH L GHTSTVRC+ +H VVSGSRD TLRVWD+ G LHVL+GH AAVRCVQY+G+ VVSGAYD++VKVWD ETETCLHTL GH+NRV+ +SG DT +
Sbjct: 194 TSTTGLVPCSATPTTFGDLRAANGQGQQ-RRRITS--VQPPTGLQEWLKMFQSWSGPEKLLALDELIDSCEPTQVKHMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH--IKRRKVIKPGFI--HSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI 563 HSP 2 Score: 245.358 bits (625), Expect = 3.743e-68 Identity = 119/149 (79.87%), Postives = 132/149 (88.59%), Query Frame = 1
Query: 1468 SGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDLVELDSGGSGGVVWRVKCNEKKLVCAVGSRNGTEETKLLVLDFDI 1914
SGSLDTSIRVWD +G +HTL GHQSLTSGM LK+N LVSGNADSTVKIWDI +GQCL TL GPNKHQSAVT LQFN FV+TSSDDG+VKLWDLKTGEF+R+LV L+SGGSGGVVWR++ + KLVCAVGSRNGTEETKLLVLDFD+
Sbjct: 556 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 704 HSP 3 Score: 133.65 bits (335), Expect = 9.683e-32 Identity = 77/203 (37.93%), Postives = 114/203 (56.16%), Query Frame = 3
Query: 924 RNWRSNTLRPVMYLRGHDDHVVTCLQFDGVRIVSASDDNTLKVWSADTGTLIRTLVGHTGGVWSSQLSGNIVVSGSTDRTLRVWNADSGECIHVLQGHTSTVRCLAMHGDNVVSGSRDGTLRVWDVMKGTHLHVLIG---HAAAVRCVQYNGKYVVSGAYDYLVKVWDVETETCLHTLT-----GHSNRVWLSGYFDTCLGCS 1508
R W T + + L GH V C+Q+DG R+VS + D +KVW +T T + TL GHT V+S Q G VVSGS D ++RVW+ ++G CIH L GH S + + + +VSG+ D T+++WD+ G L L G H +AV C+Q+N +V++ + D VK+WD++T + L G VW +T L C+
Sbjct: 484 RVWDIETGQCLHVLMGHVA-AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 685 HSP 4 Score: 89.7373 bits (221), Expect = 4.580e-18 Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 1468 SGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDL 1782
SGS D +++VW+A +G+ +HTL GH S M L +VSG+ D+T+++WDI +GQCLH L G H +AV +Q++ + VV+ + D VK+WD +T L L
Sbjct: 436 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG---HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 537 HSP 5 Score: 85.5001 bits (210), Expect = 8.849e-17 Identity = 40/106 (37.74%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 1468 SGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDLV 1785
SGS D +++VW A++G+ L TL+GH +++N ++SG+ D T+K+W+ +G+C+HTL G H S V + + K VV+ S D ++++WD++TG+ L L+
Sbjct: 396 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG---HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 498 HSP 6 Score: 85.1149 bits (209), Expect = 1.313e-16 Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 1468 SGSLDTSIRVWDALSGQLLHTLLGHQSLTSGMVLKNNYLVSGNADSTVKIWDIVSGQCLHTLTGPNKHQSAVTSLQFNTKFVVTSSDDGSVKLWDLKTGEFLRDLVELDSGGSG 1809
SGS D ++RVWD +GQ LH L+GH + + +VSG D VK+WD + CLHTL G H + V SLQF+ VV+ S D S+++WD++TG + L S SG
Sbjct: 476 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG---HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 586 The following BLAST results are available for this feature:
BLAST of TCONS_00012615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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