TCONS_00012620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012620
Unique NameTCONS_00012620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012620 ID=TCONS_00012620|Name=TCONS_00012620|organism=Clytia hemisphaerica|type=transcript|length=2149bp
ACTAACCTCCCTCTCCctccccctctccccccttcactgcgtaggTACTA
TGTGGGTGGCCCCTGTGCCAATCTACAAAAGCGTTCATATTGAATTAATT
GTCTTCAAATCAAAGTTATcgtcttttatttatttcagcACAAAAGAAAT
AGAATTACTAAAAAACCATTAACTAACGATTCAGCAAATGGTCAATATAC
AATgagtgaaaaaaactaaaatgacaAATCGAATATGTAATCAGCATATT
AGGAATGTTTGTCCAATGCTATAATCAAGTATCTTCAACATGACATCTAC
GGAGGAGAGCAAGGATGTAGAGTTTGACTATGGTGATGAATTCTTTACCA
AATCAGCCCAAGATACTGTTGAATCTCAAGATGCAGATCCTGCACAGCTG
ACAGAGACAAATACATCCGTCGAGAGCAAAGAAGAGTTGAATCAAAACAG
GATTGAGAATAAATTACCTGAGTTAGAAATTACTGATCATGAACAAGATG
TAATGAAATCTACTGGTGAAAAACAAGCTTCCATCAACGATATCACATCG
GAGCCTGGTGAATCACCAGAAACTGAGGAGGCCAGGGTTGAAACGAATGC
TGAATCTGATGGTGAAGTTGATGAATGGGATGAACTGCAACTGGATCCTA
AAAATTCTGCCGAAAATCCTGAAAACATGACATCTCCAATGGAATTCAAA
GAAGCTTTGCAATTCTTCGAAAACATCGATCTCAACCAATACGCTGATAA
AATACGAACAGCTCCAAAAAGATCTGGGATTTCTTCAGTCTTTCATAACA
TTGTTGGACCACCGAAACTTCACAAATCACTAGTCCCTGAACGCAATTTG
ATATTCACTCTAGCCTTGATACCATTTCAAAATGATGAACTGGTGCACGT
TCGGATATTACAGACATTATATAAATCATTATCCAACAGGAAATTTGATT
GTCCACGTTTTGGCCCTCATTGGGAACTGATCGGGTTTCAAGGTAATGAC
CCTTCAACAGATCTCCGTGGCTGTGGAATGCTTGGCTTGTTAACAACTCT
TCACTTTGTTACATCATCTAACACCAAAACGCTAGCTTCAAACATTTATC
AACTATCACGTCATGAGATTCAAAATTTCCCTTTTTGCGTGATGTCTATC
AATATCACACGCATCTCTTTACAAGTGCTTCGTAGTGGGAAAATTAACAA
aGAGTGCAACCAGCGTTTAAAACAAAGACATAAATCGAAACAGAAATATA
CTAACGACATAGACCTTACGGTTTACGATGTTTTTCAAGAACTTTACGAA
GCCATATTCTACAAATTATATACAGTTTGGAAGAACGAAGGAAAAACAAT
GACAGAGTCTGGTTTCGTCATAAGAGATATTGAAACATTAGCCAAACAAA
AACCAATGGATTTATTGAAAAACTATAGGAAAAGACTTTCTTCTGAAGGA
AGCAAGAAGAAAAATGGTGGAAACCAGAATGAAGAGAAAATCGAATCCTT
TGTAGGAATTGAAGACTTAGGATGAAGAACGCTTTTCACTAGGCAAAAGA
AGGTAATTTAATTAGCACTAACCACTAATGTTTCCTCTGGCAAAGTTACT
TGAGCATGTTAACTGGGTATCTTCATTAGCCAATGGGCTTCTTTTCATTC
GTTACATTATCTTATTACCAAATTAccgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgatataCAGATGCAAGATTTCTATTTT
GCGAGTAAGAGGGTTTTAGAGTCAAATGATCCACTTATAAAGATTTATAA
TGACCAGGCTCATATAACTTGGACGCACCAATGACAATTTGTGACTGCGT
AAATACCCTTCAGTAATTCCTACACTTTactttaaaattattattttgaa
cTAACAGGAAAGTTggattttttaagttttcagGGCTGTATTATTTTagt
agtttttagtttttttaaaaaattttttattttgtacataTGAACTTTGA
ATTTTAACTGCCCACGTGTAAATTATTGATTCCATAAAGATTAGAATTTT
TGAAAGAGAACATTGGTTCGCAAGATGAAGAGCAAACGGTTAAAaagcc
Run BLAST on NCBI

transcript from alignment at sc0000146:145898..150072+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012620 ID=TCONS_00012620|Name=TCONS_00012620|organism=Clytia hemisphaerica|type=transcript|length=4175bp|location=Sequence derived from alignment at sc0000146:145898..150072+ (Clytia hemisphaerica)
ACTAACCTCCCTCTCCctccccctctccccccttcactgcgtaggTACTA
TGTGGGTGGCCCCTGTGCCAATCTACAAAAGCGTTCATATTGAATTAATT
GTCTTCAAATCAAAGTTATcgtcttttatttatttcagcACAAAAGAAAT
AGAATTACTAAAAAACCATTAACTAACGATTCAGCAAATGGTCAATATAC
AATgagtgaaaaaaactaaaatgacaAATCGAATATGTAATCAGCATATT
AGGAATGTTTGTCCAATGCTATAATCAAGTATCTTCAACATGACATCTAC
GGAGGAGAGCAAGGATGTAGAGTTTGACTATGGTGATGAATTCTTTACCA
AATCAGCCCAAGATACTGTTGAATCTCAAGATGCAGATCCTGCACAGCTG
ACAGAGACAAATACATCCGTCGAGAGCAAAGAAGAGTTGAATCAAAACAG
GATTGAGAATAAATTACCTGAGTTAGAAATTACTGATCATGAACAAGATG
TAATGAAATCTACTGGTGAAAAACAAGCTTCCATCAACGATATCACATCG
GAGCCTGGTGAATCACCAGAAACTGAGGAGGCCAGGGTTGAAACGAATGC
TGAATCTGATGGTGAAGTTGATGAATGGGATGAACTGCAACTGGATCCTA
AAAATTGTAGGTGTATAGTTAAACAGAAATTTACTCTTTCAATGAAATCA
GAGTCCAATATcattatttgaaagtttcttagaaatttttcaaaatatca
tatTCCTTTATTCACTAGATAGGCTATAACTGCTCACATGTTTCTGTGTC
AAAATCCACCCGTGCTCATTTATATTTTCCAAAATGACTTTTCAATCAAA
TTACTGCTTTTCTTTCAGCTGCCGAAAATCCTGAAAACATGACATCTCCA
ATGGAATTCAAAGAAGCTTTGCAATTCTTCGAAAACATCGATCTCAACCA
ATACGCTGATAAAATACGAACAGCTCCAAAAAGATCTGGGATTTCTTCAG
TCTTTCATAACATTGTTGGACCACCGAAACTTCACAAATCACTAGTCCCT
GAACGCAATTTGATATTCACTCTAGCCTTGATACCATTTCAAAATGATGA
ACTGGTGCACGTTCGGATATTACAGACATTATATAAATCATTATCCAACA
GGAAATTTGATTGTCCACGTTTTGGCCCTCATTGGGAACTGATCGGGTTT
CAAGGTAAGCGAGTAATAATAATTTtgtaagaacacgaggctgactATGA
TTTCAGGTTATTTTAATCTTcaggtaaaaaaaacaaaactaataaaaacG
TTGTAAGAACGTAGATGACGACGTagtcttttatacggaaacacccgaaa
acacGGGGCATTTGTcaccagttttgaatttaaactaTTAAACTGATGGC
AAAcaccatagtgtcctcccccctggattcaggggggggaatgggttttg
aggtcaaaaggacgtataggggggaaagaattttttttgtagcCAGGGTG
GGGGAAAACGATGGgggggggaatggaaaattttcattctaggcatgggg
gggactcaccaaaatcaattcaaaattgaaaaacatctggttttattcat
ttatttcaaCCAGCAATATTACGGTTTAAAAAcaaccatcctttccattt
attcttgaattagaactaccttagggaaaacaataagcgttaaattcatc
aaattacagctttttatgCGTGAGGGGGGGGGACAGAGAAATTTTTGGAG
GCAGGGGGGGGAAGAATGAGGGGgtgatggaaaattttcattctaggcat
gggggggactcaccaaaatcaattcaaaattgaaaaacatctggttttat
tcatttatttcaaCCAGCAATATTACGGTTTAAAAAcaaccatcctttcc
atttattcttgaattagaactaccttagggaaaacaataagcgttaaatt
catcaaattacagctttttatgCGTGAGGGGGGGGGACAGAGAAATTTTT
GGAGGCAGGGGGGGGAAGAATGAGGGGgtgatggaaaattttcattctag
gcatgggggggactcaccaaaatcaattcaaaattgaaaaacatctggtt
ttattcatttatttcaaCCAGCAATATTACGGTTTAAAAAcaaccatcct
ttccatttattcttgaattagaactaccttagggaaaacaataagcgtta
aattcatcaaattacagctttttatgcgtgagggggggggggacagAGAA
ATTTTTGGAGGCAGGGTGGGGAAGAATGAGGGGgtgatggaaaattttca
ttctaggcatggggggggagacaccctgaaggacactatgaACACTCGCT
GTATTTcgtgtgtttccgtataaaagattacgtcatgaatataaaaaatt
aagaacatcgagCAGCAGTTTTAGTCCTAGACCAGTAGTTAGTGTATTCC
CCTTCTTGAAGTGTATTTTTTAGTATTATCGActcatttctttcaaacct
aGCAAATCAGAGGAAAGGAGAACAGTTGTTacactttgttttttttcacc
ttATAGGTAATGACCCTTCAACAGATCTCCGTGGCTGTGGAATGCTTGGC
TTGTTAACAACTCTTCACTTTGTTACATCATCTAACACCAAAACGCTAGC
TTCAAACATTTATCAACTATCACGTCATGAGATTCAAAATTTCCCTTTTT
GCGTGATGTCTATCAATATCACACGCATCTCTTTACAAGTGCTTCGTAGT
GGGAAAATTAACAAGTAAGTCGTTTGTACGTATCGTCAAATAAAGGTAGT
CTGATGATAGCTCTAgcactttttaacaaaaatggAAATTATTCTTTTCT
ATGTAATTCATGAcatttatgacgtattgttttatacggaagcactcAAA
AAAGACCGAgtgtttgccactaattttgaaCTTGAACAATAAAACTAGTA
GCCAACGCTCAGGCTATTTTCGATgcaaacattacgtaatgaatacCATG
AATCCTGATGAGTGATTTCTTGTTAGGTATCTTTATTTCACTGATAAACG
TACTTGTCCTTAAgttattttcgaaaatcctgGTTATAAATTGTACTTTG
GACATAAACTGGTCTGGCCCAATGATGCGAGAGGAATTTCTGGAAACGTA
GCCAAATGTAAATTTCGTGATTCAAGCAACGATAaccttcaaaaatggtc
taatCATCCttctatttttgtttcagaGAGTGCAACCAGCGTTTAAAACA
AAGACATAAATCGAAACAGAAATATACTAACGACATAGACCTTACGGTTT
ACGATGTTTTTCAAGAACTTTACGAAGCCATATTCTACAAATTATATACA
GTTTGGAAGAACGAAGGAAAAACAATGACAGAGTCTGGTTTCGTCATAAG
AGATATTGAAACATTAGCCAAACAAAAACCAATGGATTTATTGAAAAACT
ATAGGAAAAGACTTTCTTCTGAAGGAAGCAAGAAGAAAAATGGTGGAAAC
CAGAATGAAGAGAAAATCGAATCCTTTGTAGGAATTGAAGACTTAGGATG
AAGAACGCTTTTCACTAGGCAAAAGAAGGTAATTTAATTAGCACTAACCA
CTAATGTTTCCTCTGGCAAAGTTACTTGAGCATGTTAACTGGGTATCTTC
ATTAGCCAATGGGCTTCTTTTCATTCGTTACATTATCTTATTACCAAATT
Accgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattgattgattgattgattgattgattgattg
atataCAGATGCAAGATTTCTATTTTGCGAGTAAGAGGGTTTTAGAGTCA
AATGATCCACTTATAAAGATTTATAATGACCAGGCTCATATAACTTGGAC
GCACCAATGACAATTTGTGACTGCGTAAATACCCTTCAGTAATTCCTACA
CTTTactttaaaattattattttgaacTAACAGGAAAGTTggatttttta
agttttcagGGCTGTATTATTTTagtagtttttagtttttttaaaaaatt
ttttattttgtacataTGAACTTTGAATTTTAACTGCCCACGTGTAAATT
ATTGATTCCATAAAGATTAGAATTTTTGAAAGAGAACATTGGTTCGCAAG
ATGAAGAGCAAACGGTTAAAaagcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007080XLOC_007080Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012620-exon-sc0000146-1491911889:145898..146553TCONS_00012620-exon-sc0000146-1491911889:145898..146553Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1510915933:145898..146553TCONS_00012620-exon-sc0000146-1510915933:145898..146553Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1575043694:145898..146553TCONS_00012620-exon-sc0000146-1575043694:145898..146553Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1491911889:146766..147101TCONS_00012620-exon-sc0000146-1491911889:146766..147101Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1510915933:146766..147101TCONS_00012620-exon-sc0000146-1510915933:146766..147101Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1575043694:146766..147101TCONS_00012620-exon-sc0000146-1575043694:146766..147101Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1491911889:148454..148661TCONS_00012620-exon-sc0000146-1491911889:148454..148661Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1510915933:148454..148661TCONS_00012620-exon-sc0000146-1510915933:148454..148661Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1575043694:148454..148661TCONS_00012620-exon-sc0000146-1575043694:148454..148661Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1491911889:149124..150072TCONS_00012620-exon-sc0000146-1491911889:149124..150072Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1510915933:149124..150072TCONS_00012620-exon-sc0000146-1510915933:149124..150072Clytia hemisphaericaexon
TCONS_00012620-exon-sc0000146-1575043694:149124..150072TCONS_00012620-exon-sc0000146-1575043694:149124..150072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:145898..150072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.17091	7.00771	3.40063	2.03684	68.0231	48.1872	36.7868	36.346	25.9319	22.9707	15.2468	16.2176	8.52682	6.00854	6.67039	5.50042	8.68122	6.29858	3.8172	4.08245	5.25185	4.3555	12.7	12.3182	7.97847	7.1654	10.4543	9.14609	9.56721	8.52661
Blast
[Close]
BLAST of TCONS_00012620 vs. Swiss-Prot (Human)
Match: ELMD3 (ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.981e-63
Identity = 112/273 (41.03%), Postives = 167/273 (61.17%), Query Frame = 2 
Query:  620 DEWDEL-----QLDPKNSAENPENMTSPMEFKEALQFFENIDLNQYADKIRTAPKRSGISSVFHNIVGPPKLHKSLVPERNLIFTLALIPFQNDELVHVRILQTLYKSLSNRKFDCPRFGPHWELIGFQGNDPSTDLRGCGMLGLLTTLHFVTSSNTKTLASNIYQLSRHEIQNFPFCVMSINITRISLQVLRSGKINKECNQRLKQRHKSKQKYTNDIDLTVYDVFQELYEAIFYKLYTVWKNEGKTMTESGFVIRDIETLAKQKPMDLLKN 1423
            +EW+ +     +   + S+E P  + S   F EALQ F+ +DL+ +  +I+   +R+G++++ H + GPPKLH+ L  ER+L+ T+A     + + VH R+LQT+YK L+  KFDC   G HWE +GFQG +P+TDLRG G L LL  L+ V  S T  +A  I++LSRH IQ FPFC+MS+NIT I++Q LR   +++ECN++ K                V  V    Y A F  L  VW+ + KT+++SGFV++++E LAK+ P  LLK 
Sbjct:   77 EEWEAVDTIQPETGSQASSEQPGQLIS---FSEALQHFQTVDLSPFKKRIQPTIRRTGLAALRHYLFGPPKLHQRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYKKLTGSKFDCALHGNHWEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQEIFRLSRHHIQQFPFCLMSVNITHIAIQALREECLSRECNRQQK----------------VIPVVNSFYAATFLHLAHVWRTQRKTISDSGFVLKELEVLAKKSPRRLLKT 330
The following BLAST results are available for this feature:
BLAST of TCONS_00012620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELMD31.981e-6341.03ELMO domain-containing protein 3 OS=Homo sapiens G... [more]
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