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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012637 ID=TCONS_00012637|Name=TCONS_00012637|organism=Clytia hemisphaerica|type=transcript|length=1187bp
ATTTTGCAGTCgattgaaaatgcttcattcGGAGAAAGAAGATAAAAATC
TGCCTGAGCAAAGCGATTGTCAAAAGAATGCACAGGCTATGGAAGACCAA
TTCCTAAAGAATGCCACAAATTATATCTACTTATCAGACAAGAAAAATAG
ATCTCATTTGATAGCAGCAATGCGTTGGACCAGATTCTTTTATTTCTTGC
AAATTTCTTTGATCGTGTTAACGTCAGTAATGACCGTCCTGGCAGCTGTG
GAAGATAGACTTGGTGATAAGTTACCTAATCTTGTTCTGCCAATCATTGC
AGGTATTGCAACTCTGTTTTCGAGTTTTTTGGGCGTCCTAAAGCCTCAGG
AAAGACAAAATGCTCATTTAGAAAGTGCAAATAAATTCCGAGTGATGATG
TTGCGATTGGTTTCATGTGAGCATATGGATGAATATAAAGAAGTGAAACA
AGAAATCCAGAAAGAGTTGATGAATGCTCCTTGTGTATACCAGTATAATG
AGTCCAAAAAACAACGCAAAAAGCAAGAAGAGTGGAGTAAAAGGATGTGG
GCATTGAACCCTCTTTTGAAGATTCAATTGTATCGAGATGAAAAGATGTG
GGAAGATTATCATGATAAGACAAATGATAAACTGACTGATGATGAGGTTG
ATAAGATTCTGGCGGAGAGAAAGGCAGAAAGATTGAAGCTTGAATTGTAC
AAAGATGAAAAGCTTCgtgaatattatcaaaatggAAAGCTTACCGATAA
AGAAATTGACGAGATATTGGCAAAGAAAAAAGCGGGAAAGATATGGACAT
CTGAGTTGAGTGGACGTCCAAAGGAGGTTCAAGTCGATGAGAAACCATGG
AAAGATATCATGTCCAAATTTGAGGGCAAGGATCAATCTACCAGCACAGC
AACACCCGCTACTAAAGGTGGCGGAAAGGGAATCGGTTCACGGTCAGAAC
CAACGGGTTCGTCCCAAGGAGATCGTGGGAAAACACCACTAGTCGAAAAG
GAAAAACCTGATGATATAACGGTTCTTATTCACTCTGATCaccaatttca
aaatggtagccgaaATTCTTCAACTTCTCCTAACTCGATGGAGATGGATG
AATTAGCAAGAAAAGACACTTCCTCTGATGGTGAAAGCAATAGAGGTGAG
AAAGATGGACTTTTACCAAGCTCCTCTGCATCGTGAG Run BLAST on NCBI protein sequence of TCONS_00012637-protein >TCONS_00012637-protein ID=TCONS_00012637-protein|Name=TCONS_00012637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
FCSRLKMLHSEKEDKNLPEQSDCQKNAQAMEDQFLKNATNYIYLSDKKNR
SHLIAAMRWTRFFYFLQISLIVLTSVMTVLAAVEDRLGDKLPNLVLPIIA
GIATLFSSFLGVLKPQERQNAHLESANKFRVMMLRLVSCEHMDEYKEVKQ
EIQKELMNAPCVYQYNESKKQRKKQEEWSKRMWALNPLLKIQLYRDEKMW
EDYHDKTNDKLTDDEVDKILAERKAERLKLELYKDEKLREYYQNGKLTDK
EIDEILAKKKAGKIWTSELSGRPKEVQVDEKPWKDIMSKFEGKDQSTSTA
TPATKGGGKGIGSRSEPTGSSQGDRGKTPLVEKEKPDDITVLIHSDHQFQ
NGSRNSSTSPNSMEMDELARKDTSSDGESNRGEKDGLLPSSSAS Run BLAST on NCBI transcript from alignment at sc0000146:324251..325510+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012637 ID=TCONS_00012637|Name=TCONS_00012637|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at sc0000146:324251..325510+ (Clytia hemisphaerica)
ATTTTGCAGTCgattgaaaatgcttcattcGGAGAAAGAAGATAAAAATC
TGCCTGAGCAAAGCGATTGTCAAAAGAATGCACAGGCTATGGAAGACCAA
TTCCTAAAGAATGCCACAAATTATATCTACTTATCAGACAAGAAAAATAG
ATCTCATTTGATAGCAGCAATGCGTTGGACCAGGTTCTTTTATTTCTTGC
AAATTTCTTTGATCGTGTTAACGTCNTCATTTGATAGCAGCAATGCGCTG
GACCAGATTCTTTTATTTCTTGCAAATTTCTTTGATCGTGTTAACGTCAG
TAATGACCGTCCTGGCAGCTGTGGAAGATAGACTTGGTGATAAGTTACCT
AATCTTGTTCTGCCAATCATTGCAGGTATTGCAACTCTGTTTTCGAGTTT
TTTGGGCGTCCTAAAGCCTCAGGAAAGACAAAATGCTCATTTAGAAAGTG
CAAATAAATTCCGAGTGATGATGTTGCGATTGGTTTCATGTGAGCATATG
GATGAATATAAAGAAGTGAAACAAGAAATCCAGAAAGAGTTGATGAATGC
TCCTTGTGTATACCAGTATAATGAGTCCAAAAAACAACGCAAAAAGCAAG
AAGAGTGGAGTAAAAGGATGTGGGCATTGAACCCTCTTTTGAAGATTCAA
TTGTATCGAGATGAAAAGATGTGGGAAGATTATCATGATAAGACAAATGA
TAAACTGACTGATGATGAGGTTGATAAGATTCTGGCGGAGAGAAAGGCAG
AAAGATTGAAGCTTGAATTGTACAAAGATGAAAAGCTTCgtgaatattat
caaaatggAAAGCTTACCGATAAAGAAATTGACGAGATATTGGCAAAGAA
AAAAGCGGGAAAGATATGGACATCTGAGTTGAGTGGACGTCCAAAGGAGG
TTCAAGTCGATGAGAAACCATGGAAAGATATCATGTCCAAATTTGAGGGC
AAGGATCAATCTACCAGCACAGCAACACCCGCTACTAAAGGTGGCGGAAA
GGGAATCGGTTCACGGTCAGAACCAACGGGTTCGTCCCAAGGAGATCGTG
GGAAAACACCACTAGTCGAAAAGGAAAAACCTGATGATATAACGGTTCTT
ATTCACTCTGATCaccaatttcaaaatggtagccgaaATTCTTCAACTTC
TCCTAACTCGATGGAGATGGATGAATTAGCAAGAAAAGACACTTCCTCTG
ATGGTGAAAGCAATAGAGGTGAGAAAGATGGACTTTTACCAAGCTCCTCT
GCATCGTGAG Coding sequence (CDS) from alignment at sc0000146:324251..325510+ >TCONS_00012637 ID=TCONS_00012637|Name=TCONS_00012637|organism=Clytia hemisphaerica|type=CDS|length=2370bp|location=Sequence derived from alignment at sc0000146:324251..325510+ (Clytia hemisphaerica)
TTTTGCAGTCgattgaaaatgcttcattcGGAGAAAGAAGATAAAAATCT
GCCTGAGCAAAGCGATTGTCAAAAGAATGCACAGGCTATGGAAGACCAAT
TCCTAAAGAATGCCACAAATTATATCTACTTATCAGACAAGAAAAATAGA
TCTCATTTGATAGCAGCAATGCGTTGGACCAGATTCTTTTATTTCTTGCA
AATTTCTTTGATCGTGTTAACGTCAGTAATGACCGTCCTGGCAGCTGTGG
AAGATAGACTTGGTGATAAGTTACCTAATCTTGTTCTGCCAATCATTGCA
GGTATTGCAACTCTGTTTTCGAGTTTTTTGGGCGTCCTAAAGCCTCAGGA
AAGACAAAATGCTCATTTAGAAAGTGCAAATAAATTCCGAGTGATGATGT
TGCGATTGGTTTCATGTGAGCATATGGATGAATATAAAGAAGTGAAACAA
GAAATCCAGAAAGAGTTGATGAATGCTCCTTGTGTATACCAGTATAATGA
GTCCAAAAAACAACGCAAAAAGCAAGAAGAGTGGAGTAAAAGGATGTGGG
CATTGAACCCTCTTTTGAAGATTCAATTGTATCGAGATGAAAAGATGTGG
GAAGATTATCATGATAAGACAAATGATAAACTGACTGATGATGAGGTTGA
TAAGATTCTGGCGGAGAGAAAGGCAGAAAGATTGAAGCTTGAATTGTACA
AAGATGAAAAGCTTCgtgaatattatcaaaatggAAAGCTTACCGATAAA
GAAATTGACGAGATATTGGCAAAGAAAAAAGCGGGAAAGATATGGACATC
TGAGTTGAGTGGACGTCCAAAGGAGGTTCAAGTCGATGAGAAACCATGGA
AAGATATCATGTCCAAATTTGAGGGCAAGGATCAATCTACCAGCACAGCA
ACACCCGCTACTAAAGGTGGCGGAAAGGGAATCGGTTCACGGTCAGAACC
AACGGGTTCGTCCCAAGGAGATCGTGGGAAAACACCACTAGTCGAAAAGG
AAAAACCTGATGATATAACGGTTCTTATTCACTCTGATCaccaatttcaa
aatggtagccgaaATTCTTCAACTTCTCCTAACTCGATGGAGATGGATGA
ATTAGCAAGAAAAGACACTTCCTCTGATGGTGAAAGCAATAGAGGTGAGA
AAGATGGACTTTTACCAAGCTCCTCTGCATCGTGATTTTGCAGTCgattg
aaaatgcttcattcGGAGAAAGAAGATAAAAATCTGCCTGAGCAAAGCGA
TTGTCAAAAGAATGCACAGGCTATGGAAGACCAATTCCTAAAGAATGCCA
CAAATTATATCTACTTATCAGACAAGAAAAATAGATCTCATTTGATAGCA
GCAATGCGTTGGACCAGATTCTTTTATTTCTTGCAAATTTCTTTGATCGT
GTTAACGTCAGTAATGACCGTCCTGGCAGCTGTGGAAGATAGACTTGGTG
ATAAGTTACCTAATCTTGTTCTGCCAATCATTGCAGGTATTGCAACTCTG
TTTTCGAGTTTTTTGGGCGTCCTAAAGCCTCAGGAAAGACAAAATGCTCA
TTTAGAAAGTGCAAATAAATTCCGAGTGATGATGTTGCGATTGGTTTCAT
GTGAGCATATGGATGAATATAAAGAAGTGAAACAAGAAATCCAGAAAGAG
TTGATGAATGCTCCTTGTGTATACCAGTATAATGAGTCCAAAAAACAACG
CAAAAAGCAAGAAGAGTGGAGTAAAAGGATGTGGGCATTGAACCCTCTTT
TGAAGATTCAATTGTATCGAGATGAAAAGATGTGGGAAGATTATCATGAT
AAGACAAATGATAAACTGACTGATGATGAGGTTGATAAGATTCTGGCGGA
GAGAAAGGCAGAAAGATTGAAGCTTGAATTGTACAAAGATGAAAAGCTTC
gtgaatattatcaaaatggAAAGCTTACCGATAAAGAAATTGACGAGATA
TTGGCAAAGAAAAAAGCGGGAAAGATATGGACATCTGAGTTGAGTGGACG
TCCAAAGGAGGTTCAAGTCGATGAGAAACCATGGAAAGATATCATGTCCA
AATTTGAGGGCAAGGATCAATCTACCAGCACAGCAACACCCGCTACTAAA
GGTGGCGGAAAGGGAATCGGTTCACGGTCAGAACCAACGGGTTCGTCCCA
AGGAGATCGTGGGAAAACACCACTAGTCGAAAAGGAAAAACCTGATGATA
TAACGGTTCTTATTCACTCTGATCaccaatttcaaaatggtagccgaaAT
TCTTCAACTTCTCCTAACTCGATGGAGATGGATGAATTAGCAAGAAAAGA
CACTTCCTCTGATGGTGAAAGCAATAGAGGTGAGAAAGATGGACTTTTAC
CAAGCTCCTCTGCATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012637-exon-sc0000146-1491911889:324251..324433 | TCONS_00012637-exon-sc0000146-1491911889:324251..324433 | Clytia hemisphaerica | exon |
| TCONS_00012637-exon-sc0000146-1510915933:324251..324433 | TCONS_00012637-exon-sc0000146-1510915933:324251..324433 | Clytia hemisphaerica | exon |
| TCONS_00012637-exon-sc0000146-1575043694:324251..324433 | TCONS_00012637-exon-sc0000146-1575043694:324251..324433 | Clytia hemisphaerica | exon |
| TCONS_00012637-exon-sc0000146-1491911889:324507..325510 | TCONS_00012637-exon-sc0000146-1491911889:324507..325510 | Clytia hemisphaerica | exon |
| TCONS_00012637-exon-sc0000146-1510915933:324507..325510 | TCONS_00012637-exon-sc0000146-1510915933:324507..325510 | Clytia hemisphaerica | exon |
| TCONS_00012637-exon-sc0000146-1575043694:324507..325510 | TCONS_00012637-exon-sc0000146-1575043694:324507..325510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:324251..325510 + |
Blast
The following BLAST results are available for this feature:
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