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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012645 ID=TCONS_00012645|Name=TCONS_00012645|organism=Clytia hemisphaerica|type=transcript|length=1198bp
TCTCGCCAAAGTTCGaaagctgaaaatttcaaaacattcgaaattttaaa
ctttaaaatcaAACAGAACAAAAAGATGTGGCTGGGAACATGCAATGTTG
ACAGTGTTCAGCCAGTGGAAATAAACTACGTAGAGTTTAAGCCAAAGAAT
GTAACTAAAATTGATGTTAAACCTGCACAAGAAACTATTTGCAGAGTCAA
TTCTAACTCTTTGTATAGGGGTACTTCATATTTACCAGAAGATTTGAGCA
ATAACTGTTCAGATTCTGAAAAGAGTGATGAGaagaaaatgaactttttg
CAGCCCAGAGAACGACCCTCTTCTCAACTACGTCAGAGGAAAAATGTTTC
ACAATCAGTTCaacaagaagaaaagaaaacgagACGAGCTTCCACAACCA
CTCCCACTTCTGGTGCTTCTGATTCCGCGAAAGAAGCCTACGATAAGTTG
TTCAATAATGGAACCAAACAAAGACCAGCAGCTAGCAACAGGAAGATAAG
ACTTAGCTACTCTGGTTCCAGTATTGCAGAAAAATCGCCAAAAGAAAGTC
GTTCACGTCACAGCGTGATTTCCATTGGAGAACAGGAGGGAAACGTTGGC
TCAAACAACTTAAAGGAATACCGAGCTTTCAATCCTACACCAAGTGAACA
ACCTATCAACCAACAATCAGATGGCAGTAGTGGTTCTAGATCAGTCTCCT
CATCGACAAGTTCCGTCAAATCAATGGTTAGCTCTGGCTTCAATAGATTC
TCGAATGCTATTCAAAATACTAATCCATATTCTCGCCATTCACGTTACTC
ATCTTCAAGAAATGACGATGAAAATCCAATGGATATCCCTTTAGTGGAAA
TGGCTGGTGATCCAGGAGATCATGATcagagaagaagaagaaaaattgga
CCAGAACTGGTTTGAAACAAAGGCTTTCAGATTTTTACCAAGAGATATGT
AAAATTAATTAGTCTCGGTATCTATGGCGGGATAGtggaaatttctaaaa
aacacCATCAAGTTCGTCAAGTTTcccatttttatttattttaaacaGAA
CCCAGTAAAAGAAAAATTGCCAGTCGAAGGTTATTAAGTTTCATTCGaaa
gagttttgatttttccatTTCATAAGAAGCCTGTACTGAGTGAAACCCAA
TTAATTTTTGCCTTGTTTTGCATTTTAGTCTATTTGAGAGATAAGCGA Run BLAST on NCBI protein sequence of TCONS_00012645-protein >TCONS_00012645-protein ID=TCONS_00012645-protein|Name=TCONS_00012645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
SRQSSKAENFKTFEILNFKIKQNKKMWLGTCNVDSVQPVEINYVEFKPKN
VTKIDVKPAQETICRVNSNSLYRGTSYLPEDLSNNCSDSEKSDEKKMNFL
QPRERPSSQLRQRKNVSQSVQQEEKKTRRASTTTPTSGASDSAKEAYDKL
FNNGTKQRPAASNRKIRLSYSGSSIAEKSPKESRSRHSVISIGEQEGNVG
SNNLKEYRAFNPTPSEQPINQQSDGSSGSRSVSSSTSSVKSMVSSGFNRF
SNAIQNTNPYSRHSRYSSSRNDDENPMDIPLVEMAGDPGDHDQRRRRKIG
PELV Run BLAST on NCBI transcript from alignment at sc0000146:41078..45629- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012645 ID=TCONS_00012645|Name=TCONS_00012645|organism=Clytia hemisphaerica|type=transcript|length=4552bp|location=Sequence derived from alignment at sc0000146:41078..45629- (Clytia hemisphaerica)
TCTCGCCAAAGTTCGAAAGCTGAAAATTTCAAAACATTCGAAATTTTAAA
CTTTAAAATCAAACAGAACAAAAAGATGTGGCTGGGAACATGCAATGTTG
ACAGTGTTCAGCCAGTGGAAATAAACTACGTAGAGTTTAAGCCAAAGAAT
GTAACTAAAATTGATGTTAAACCTGCACAAGAAACTATTTGCAGAGTCAA
TTCTAACTCTTTGTATAGGGGTACTTCATATTTACCAGAAGATTTGAGCA
ATAACTGTTCAGATTCTGAAAAGAGTGATGAGAAGAAAATGAACTTTTTG
CAGCCCAGAGAACGACCCTCTTCTCAACTACGTCAGGTATATATTCACTT
TCTGAGGGCATCCTTTGGGGGCAGATTCTAATGCTTGCATACTGTTGAAA
ATTAATTGTTTGTGACAAGGAAAGGTGGAGATGACAGTCTTTTTTCATGA
AATTTTCAAATAAGAATATCCTAACTGTACAGAGCTATTTTTTCCATCCT
CTCGAATTTTCTGACTTGAAAGCAATTGGATTCAAATACCCAGCCATAAA
AAACATATGGGGAATATTAATACCATAGAGTGTCAGTCCGCTATTTTTAC
CCCCACTGGCAGAAAAAATCCTACCGGGTACCACCCGCTAGTCGATTTTT
TCCAACCACCCCCCATCAACTGTTTATTAATTTTTGAAGAACTTTTTTCA
GCTGACGGCCAGGTTTTTAGCCTATAATAAGTAACTATACTATAGTTACT
TGTTTTAAGTAACTATACTATAGTTACTTATTTTGGAGGTACATTTCCAA
ACCCCAAGGTAATTAGCTACCCCTCTCCCCATTTATTATTAAAATTTGAC
GATTTTTCTCACCCCCTCATTTATTCCAATCCCCTGTTTATTAAATTTGT
ATAATGTATTTGTAAAATGTTAGTTATAGCACTTATAGTAGAGGTCATTT
TGTAAAATCGCTTGACTGTTTTATTAGAAGCACTTGTTATACATTTTTGG
AAAGCTAAGGGGTAGGGGAATCGAAATTACTATGTTTCCAATTTTTTTTC
GGACACTTTGGTGTGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTAGATCTTCATTTTTAGAATTTTTTTAAAGATTTTTTTATTTCAAA
TTTTTCCACTCACTAATATCTTTCCAATGATACCAAATTTGTAAAGATTG
AGGAATTCCTTCAAAAACTATAGGTAAAAGAAAAAAGAGTGCATACTTAT
CGTGAACAGACTTTAATCACGCATAACTTTTAGATTCAACCCGGGGTGAA
AAAGAAATTGTGTATACATGTTAGACTGGAGTCGTTTATAATGGATGTAA
TACTAATAATAGGGAGGTTAAGTATCAAAGATAAATCTACGCGACGAACG
GACCTTTTCTCTGAAAGTTTTTAAGGGTAGCAAAGTAGATGTTATATCTT
CTTTGTTCAACAATGAAGATTTTGACGGTTTTTCGTTCTTAAGCTGTTTT
AGCCTGGATTCAAGAAAATGCAGGTCCACATGTTTACTGCAGGTTGCGGG
TCCAAACCCGTTCGTTCGTCGCGTTGATTTATCTTAGATACTTAACCTCC
CTAATAAACACAAATAATGATACGGGATTTAGTTTGTATAAACGACTGGA
AGAATCCGGTGTTCCAGCCTTATAGATACCGGGGCTAGCTACGCAGAAAC
TTGCGTAGCGAGAAAACAATTTATCAAGCAACAACAAACATTCAAAATAA
AATCAACTCAAATGAAAAAACTTTTAACACACAAATCCACACACATTTAA
ATTTTTTTTGAGCGGGAAAAATTTTAATAGCGATATTGACACTTTTTTTT
TGTTTGGAGTTAGTGCACAAAGGTTTCTAGACGACTAAAATTTACTTTTT
TGCTTTATTTCTACTATGTCTGAATTAGTCGTCTAGCTTGCTAGACTATA
TACATGTAAAAATCTGCAAAAATTTGCAAAAAAAAATTCTCAAAAAAATT
TTCACTCCGGTCCTCAGGACCGGGGTGAAATCAACCCCGGGGTGAGTTCA
ACCCGCCTAAAAACGATTTCACCCCGCCTAAACATGTGTATACAGAAACA
GTTCTTTATAGACCGGAGTGAATTTCACCCCGGGTGATTTTTTTTTAATT
TCTACTTATGAAAGGGCGTTGAAAATTTCTGAGAAAAAATTATAAATTGA
TCTGTTTCAGATAAAATAGATACATTAGAATTTCTTTTTCGACAGAGGAA
AAATGTTTCACAATCAGTTCAACAAGAAGAAAAGAAAACGAGACGAGCTT
CCACAACCACTCCCACTTCTGGTGCTTCTGATTCCGCGAAAGAAGCCTAC
GATAAGTTGTTCAATAATGGAACCAAACAAAGACCAGCAGCTAGCAACAG
GAAGATAAGACTTAGCTACTCTGGTTCCAGTATTGCAGGTAATGACATAT
TGGGCCGATCAGCACAATGGTATTCAAATATGCGAATACTACACTTTAAC
AAGAAAGTATAGTCCAGGAAAAATACTCTTAAAAATCTTCATGGTGAAAT
TCACCAAAAATATGCCAATATATTATCATCAGAATTTTACAACTGAATCT
AAAAGATTACAATTTTTAGAGAGTTTTATTTGTAAATTACTGGCTTTTCT
CAAAATTACCCGACACCCCTTTCTCACAGCCCCAGTAGATGTTTTGCCTC
AGTGGTGATAAAAATTTCTATCGAAATTCCAATGGGGATAGAAATTCTAT
TGTTCCAAGTCCAAAAAGTCAAGTTTTGTAAATGCAAGCTTTTCCATTGA
ATTTTAAGTGGAGATGAAATCAAAAATAATTTCCCAGTGGGGCTGAAAAT
ACCCTACGTATTTTTTTCCACCGTGGGTAAATTTTTGGAAAATTTTCCAG
TGGAGCTGGGGTCGCAGCAGGTCTGTGACACATGGGTGTGCCATTCACTG
ACCTGATTTTATCTTCATTCTTTGCACTCGCAGAAAAATCGCCAAAAGAA
AGTCGTTCACGTCACAGCGTGATTTCCATTGGAGAACAGGAGGGAAACGT
TGGCTCAAACAACTTAAAGGAATACCGAGCTTTCAATCCTACACCAAGTG
AACAACCTATCAACCAACAATCAGATGGCAGTAGTGGTTCTAGATCAGTC
TCCTCATCGACAAGTTCCGTCAAATCAATGGTTAGCTCTGGCTTCAATAG
ATTCTCGAATGCTATTCAAAATACTAATCCATATTCTCGCCATTCACGTT
ACTCATCTTCAAGAAATGACGATGAAAATCCAATGGATATCCCTTTAGTG
GAAATGGCTGGTGATCCAGGAGATCATGATCAGAGAAGAAGAAGAAAAAT
TGGACCAGAACTGGTTTGAAACAAAGGCTTTCAGATTTTTACCAAGAGAT
ATGTAAAATTAATTAGTCTCGGTATCTATGGCGGGATAGTGGAAATTTCT
AAAAAACACCATCAAGTTCGTCAAGTTTCCCATTTTTATTTATTTTAAAC
AGAACCCAGTAAAAGAAAAATTGCCAGTCGAAGGTTATTAAGTTTCATTC
GAAAGAGTTTTGATTTTTCCATTTCATAAGAAGCCTGTACTGAGTGAAAC
CCAATTAATTTTTGCCTTGTTTTGCATTTTAGTCTATTTGAGAGATAAGC
GA Coding sequence (CDS) from alignment at sc0000146:41078..45629- >TCONS_00012645 ID=TCONS_00012645|Name=TCONS_00012645|organism=Clytia hemisphaerica|type=CDS|length=2745bp|location=Sequence derived from alignment at sc0000146:41078..45629- (Clytia hemisphaerica)
AAAAATCGCCAAAAGAAAGTCGTTCACGTCACAGCGTGATTTCCATTGGA
GAACAGGAGGGAAACGTTGGCTCAAACAACTTAAAGGAATACCGAGCTTT
CAATCCTACACCAAGTGAACAACCTATCAACCAACAATCAGATGGCAGTA
GTGGTTCTAGATCAGTCTCCTCATCGACAAGTTCCGTCAAATCAATGGTT
AGCTCTGGCTTCAATAGATTCTCGAATGCTATTCAAAATACTAATCCATA
TTCTCGCCATTCACGTTACTCATCTTCAAGAAATGACGATGAAAATCCAA
TGGATATCCCTTTAGTGGAAATGGCTGGTGATCCAGGAGATCATGATCAG
AGAAGAAGAAGAAAAATTGGACCAGAACTGGTTTGAAGGAAAAATGTTTC
ACAATCAGTTCAACAAGAAGAAAAGAAAACGAGACGAGCTTCCACAACCA
CTCCCACTTCTGGTGCTTCTGATTCCGCGAAAGAAGCCTACGATAAGTTG
TTCAATAATGGAACCAAACAAAGACCAGCAGCTAGCAACAGGAAGATAAG
ACTTAGCTACTCTGGTTCCAGTATTGCAGTCTCGCCAAAGTTCGAAAGCT
GAAAATTTCAAAACATTCGAAATTTTAAACTTTAAAATCAAACAGAACAA
AAAGATGTGGCTGGGAACATGCAATGTTGACAGTGTTCAGCCAGTGGAAA
TAAACTACGTAGAGTTTAAGCCAAAGAATGTAACTAAAATTGATGTTAAA
CCTGCACAAGAAACTATTTGCAGAGTCAATTCTAACTCTTTGTATAGGGG
TACTTCATATTTACCAGAAGATTTGAGCAATAACTGTTCAGATTCTGAAA
AGAGTGATGAGAAGAAAATGAACTTTTTGCAGCCCAGAGAACGACCCTCT
TCTCAACTACGTCAGAAAAATCGCCAAAAGAAAGTCGTTCACGTCACAGC
GTGATTTCCATTGGAGAACAGGAGGGAAACGTTGGCTCAAACAACTTAAA
GGAATACCGAGCTTTCAATCCTACACCAAGTGAACAACCTATCAACCAAC
AATCAGATGGCAGTAGTGGTTCTAGATCAGTCTCCTCATCGACAAGTTCC
GTCAAATCAATGGTTAGCTCTGGCTTCAATAGATTCTCGAATGCTATTCA
AAATACTAATCCATATTCTCGCCATTCACGTTACTCATCTTCAAGAAATG
ACGATGAAAATCCAATGGATATCCCTTTAGTGGAAATGGCTGGTGATCCA
GGAGATCATGATCAGAGAAGAAGAAGAAAAATTGGACCAGAACTGGTTTG
AAGGAAAAATGTTTCACAATCAGTTCAACAAGAAGAAAAGAAAACGAGAC
GAGCTTCCACAACCACTCCCACTTCTGGTGCTTCTGATTCCGCGAAAGAA
GCCTACGATAAGTTGTTCAATAATGGAACCAAACAAAGACCAGCAGCTAG
CAACAGGAAGATAAGACTTAGCTACTCTGGTTCCAGTATTGCAGTCTCGC
CAAAGTTCGAAAGCTGAAAATTTCAAAACATTCGAAATTTTAAACTTTAA
AATCAAACAGAACAAAAAGATGTGGCTGGGAACATGCAATGTTGACAGTG
TTCAGCCAGTGGAAATAAACTACGTAGAGTTTAAGCCAAAGAATGTAACT
AAAATTGATGTTAAACCTGCACAAGAAACTATTTGCAGAGTCAATTCTAA
CTCTTTGTATAGGGGTACTTCATATTTACCAGAAGATTTGAGCAATAACT
GTTCAGATTCTGAAAAGAGTGATGAGAAGAAAATGAACTTTTTGCAGCCC
AGAGAACGACCCTCTTCTCAACTACGTCAGAAAAATCGCCAAAAGAAAGT
CGTTCACGTCACAGCGTGATTTCCATTGGAGAACAGGAGGGAAACGTTGG
CTCAAACAACTTAAAGGAATACCGAGCTTTCAATCCTACACCAAGTGAAC
AACCTATCAACCAACAATCAGATGGCAGTAGTGGTTCTAGATCAGTCTCC
TCATCGACAAGTTCCGTCAAATCAATGGTTAGCTCTGGCTTCAATAGATT
CTCGAATGCTATTCAAAATACTAATCCATATTCTCGCCATTCACGTTACT
CATCTTCAAGAAATGACGATGAAAATCCAATGGATATCCCTTTAGTGGAA
ATGGCTGGTGATCCAGGAGATCATGATCAGAGAAGAAGAAGAAAAATTGG
ACCAGAACTGGTTTGAAGGAAAAATGTTTCACAATCAGTTCAACAAGAAG
AAAAGAAAACGAGACGAGCTTCCACAACCACTCCCACTTCTGGTGCTTCT
GATTCCGCGAAAGAAGCCTACGATAAGTTGTTCAATAATGGAACCAAACA
AAGACCAGCAGCTAGCAACAGGAAGATAAGACTTAGCTACTCTGGTTCCA
GTATTGCAGTCTCGCCAAAGTTCGAAAGCTGAAAATTTCAAAACATTCGA
AATTTTAAACTTTAAAATCAAACAGAACAAAAAGATGTGGCTGGGAACAT
GCAATGTTGACAGTGTTCAGCCAGTGGAAATAAACTACGTAGAGTTTAAG
CCAAAGAATGTAACTAAAATTGATGTTAAACCTGCACAAGAAACTATTTG
CAGAGTCAATTCTAACTCTTTGTATAGGGGTACTTCATATTTACCAGAAG
ATTTGAGCAATAACTGTTCAGATTCTGAAAAGAGTGATGAGAAGAAAATG
AACTTTTTGCAGCCCAGAGAACGACCCTCTTCTCAACTACGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012645-exon-sc0000146-1575043694:45294..45629 | TCONS_00012645-exon-sc0000146-1575043694:45294..45629 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1575043694:42292..42484 | TCONS_00012645-exon-sc0000146-1575043694:42292..42484 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1575043694:41078..41746 | TCONS_00012645-exon-sc0000146-1575043694:41078..41746 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1510915933:45294..45629 | TCONS_00012645-exon-sc0000146-1510915933:45294..45629 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1510915933:42292..42484 | TCONS_00012645-exon-sc0000146-1510915933:42292..42484 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1510915933:41078..41746 | TCONS_00012645-exon-sc0000146-1510915933:41078..41746 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1491911889:45294..45629 | TCONS_00012645-exon-sc0000146-1491911889:45294..45629 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1491911889:42292..42484 | TCONS_00012645-exon-sc0000146-1491911889:42292..42484 | Clytia hemisphaerica | exon |
| TCONS_00012645-exon-sc0000146-1491911889:41078..41746 | TCONS_00012645-exon-sc0000146-1491911889:41078..41746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000146 | supercontig | sc0000146:41078..45629 - |
Blast
The following BLAST results are available for this feature:
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