TCONS_00012654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012654
Unique NameTCONS_00012654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012654 ID=TCONS_00012654|Name=TCONS_00012654|organism=Clytia hemisphaerica|type=transcript|length=1139bp
acaacatttaaagcaaaaaaaggaAATCGTAGAGAGTGAAAAAAGCACAT
ACCATTTCATTCTTTGGAAAACTGGAGGAAAACGAAAGACTGGCAACGAC
AACAAAATACCAGGAAAAGCTTTGACCGTGATTTATAAATTTGACTTGAC
TACTAACCTTTTCTTCTAATTCTATTCATAATCTAATTTGAATTATCGAG
ATAATTTGTAAATTACAACCTTGGAGACGTTCTGGGCGCGTATGGCGGAT
CGGGCGCAAGAGGCGTATGGTGGTATGACGTCATTTCATTGAGAGGATTT
TCCTTTCTTGAAAATCCGATTCACTGATTGGAGAAAGGAAACAAAATGGC
GATCACGAAGCCGGTTGGTGGGACGAGCTCCTCGGATCATCACAGCAAAA
GTAAACTGTTTGAAGGTTACGAATTTGACAAAGAAgggtttgaaaaactt
tttcacgaGCTTGACGTTAACAAAGATGGTAGGATTGGAGTTGATGAGTT
ATCAGACGGACTCAAAAGATTGGGAATACATCAAATACCAGGACAAGCTC
AGaaaatcaTTGACATTGGGGACATTGATGAAACTGAGGAACTGTCTTTT
GATGAATTTCTGAAATACTGTCACGATCATGAGCAAAAAGTATGGTTGAT
attcaaaaagtttgataccAATAATTCAGGTACCATCAATAAGAGTGAAC
TTGAATCTCAATTCAAGCACCTAGGAGTCAAAGTTTCTGAAAGTGAAATC
GATATGCTACTCAAAAAGATGGATAAGGATGGTTCATTACACATTGATTG
GGATGAATGGCGCAAATTTCATCTATTGAACCCCCATGCTCACAACATGG
CAAACATCATCAGGTTTTGGAGGCATTCTACGTGGTGGTTTAAGTGCTTT
TAGCATGACTACACAGTTTTCAAACGACTTGCTCACCTGCAGTGCACTCA
TCATAATGATTTGCATGCATAGATATCATTTTGTTACCATGGCAATACAT
TCCTTCCTCATAGGAAAATGTGCCTGAGAAAGAATCGGCTTTATATAGTA
AATTGATATTTAATAGAAATGTAATATTTCCAATTACTGCGCTTATTTAA
TGTTCATTTCTATAATCCTTACCCTCGTAGAAATGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00012654-protein

>TCONS_00012654-protein ID=TCONS_00012654-protein|Name=TCONS_00012654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MAITKPVGGTSSSDHHSKSKLFEGYEFDKEGFEKLFHELDVNKDGRIGVD
ELSDGLKRLGIHQIPGQAQKIIDIGDIDETEELSFDEFLKYCHDHEQKVW
LIFKKFDTNNSGTINKSELESQFKHLGVKVSESEIDMLLKKMDKDGSLHI
DWDEWRKFHLLNPHAHNMANIIRFWRHSTWWFKCF
Run BLAST on NCBI

transcript from alignment at sc0000146:460283..465390-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012654 ID=TCONS_00012654|Name=TCONS_00012654|organism=Clytia hemisphaerica|type=transcript|length=5108bp|location=Sequence derived from alignment at sc0000146:460283..465390- (Clytia hemisphaerica)
ACAACATTTAAAGCAAAAAAAGGAAATCGTAGAGAGTGAAAAAAGCACAT ACCATTTCATTCTTTGGAAAACTGGAGGAAAACGAAAGACTGGCAACGAC AACAAAATACCAGGAAAAGCTTTGACCGTGATTTATAAATTTGACTTGAC TACTAACCTTTTCTTCTAATTCTATTCATAATCTAATTTGAATTATCGAG ATAATTTGTAAATTACAACCTTGGAGACGTTCTGGGCGCGTATGGCGGAT CGGGCGCAAGAGGCGTATGGTGGTATGACGTCATTTCATTGAGAGGATTT TCCTTTCTTGAAAATCCGATTCACTGATTGGAGAAAGGAAACAAAATGGC GATCACGAAGCCGGTTGGTGGGACGAGCTCCTCGGATCATCACAGCAAAA GTAAACTGTTTGAAGGTTACGAATTTGACAAAGAAGGGTTTGAAAAACTT TTTCACGAGCTTGACGTTAACAAAGATGGTAGGATTGGAGTTGATGAGTT ATCAGACGGACTCAAAAGATTGGGAATACATCAAATACCAGGACAAGCTC AGGTAAAAAAATGAGTTTTATAATTCTTTATTTTTGAGGGTCCCTCTCTC TAAAAAGGCACTTGTGGCTGCATAAAACTCTTTTACTTTCTCTTGAAAGT TAAGTGTATTGAGTAGAAAATAGAAAAAATGGGACATGTAGCTAGTCTTG CCAAAAGTTTAATTGGTGCGGTGAGATAAAAAAATTGGTTTTTGTACGTG TAAAAAAGAAAGGTGCCATTGTTAACTTTTTTGCAACCTCTCTTTACTAA AAAAAATTCTCAAACATCTGCTGAATTATTCTGACCTGACAGCTTGAGAT ATTTGTCTTGCTTGAGATAAAAATTTTGAAGTAAAATCTGGCTGAAATCT TTATACAGTCTGCGGGAAATCCTCTCAATTGCACGCTTATCAAAGCGCGC CGTAAGCACGCAATTGCACGCTTATCAAAATGGCAGAATTTTTATAAACG CTTATCGAAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTACTCAAAATT TATCGTAGAAGAAGATTCCGTAAAAATGGATCGCCCGTTAAACCATGCCT TCGCCCGAATTAGAGAATTCTGAACCCCTTGAAGTCCCTAAGCAATTTCA ACCAGGGCGGGAGCGGGCGTAAATTATAACCGTGCAATTGCGCGCTTACG CCCTCGGAAGATAAGCGTGCAATTGAGAGGATTTCCCAGACTGTTATACC CCGATCTTCCAAATTTTCTTCAAAAAATCACCGGGGTAATTTTTTCTCCA AAAATCAGAAGGTAGGGGGAAATTTTCAGGAAAAACGAGAAATTCGTCGA GAAAATTTTATCAATCAAATCTTCACCATCCCTATGTATGGATAATGGGT CTTAGTTAGGACTTTATGATACTTAAAATATAGATAGATACCTTGAGGTG GGTAACTTGCACCAGTGGAGGCTAACATGCATAGCCCTCAAATGAATGAC CTGGCTGGTCATTAAAATAGACCTTTTTTCAAAGAGGACGTCCTGTTGAA TAATTATGTAGTCCAGCCATAAAAACAATGATAGAGCTATGCATAATTAC TGTATCATGCATATTGTAATAAATTATGCATGGTTTTAGTATTGTTTTTC TGCTGGACTACATAATTATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCT ATACAACTACTTAGCTCCGCTCGCAGCTCTACTCTACCATTTTTGTTTTG ATTTAACTTTGTATTTTAATGACCAGCCAGGTCTTTCATTTGAGGGCTAT GCATGTTAGCATCCACTGATGCAAGTTACCCAATCTCACGGTAGATAGAT AGACATAATCACAACCAAATGTGTATTTTTAAGTAAATAATTTGAAGAAG AAGAAGTTAAGCTGCTCACATCTTGACGCCATTTTTTGTTTCAATTGTGT TGGTTTTCTCTAGAGACTTTTTTCCAGCATGCGTGATTGAATGACACATC AAAGTTACCCTTACCGAGTGTCAGTAACAGATCTCACAATTTTCCACAGC GGAATGAAGAGCAGACTTTTTTACGTGTTTCTCGTTGCAAAGATTTTTTC CTTTTTTTGTGGTGTGAAAGCCTGCCTGGGTGAGAGTAGTGTATTCACAA TATTTGCTATCTATGATTTGCAGTTATGTTATAACTAGGCAAGGCCAATT TAAAATTTGTTGTTTTACAGGCCAAGCTCAGTTCGGGAAATTGCATATAT CTGCAACATTGCGAAATTTCGCATTTTTTGCATTGTCATATTCCGCAGCG CTGTGAAATTTGGCAGCTTTATCGCATCTTACCACTGTTGGTAAGGGGAA GGGCAGCCATTTGCTAATGAATTGGCTCGATACTGAGCAAAAACTCAACT CTAGCCAAGGTTTTAAAGATAAAGCAGGTAAAGATTCAAAGGTTTAGGGT CAGGCATGGGGCGGTCCACATAGTACGTACACACTAAAATATTGAAAATT GAGTACCCCCTCCCCCCTGTACGCAAGTGATGAGGTTTGCCAGATGTTAT CTTTTAATCCATTTTAGGAAAATAACTGAATATATTTCAATATTTGTTTT GAAACCTTTAAAAACTATTTTAATTTTTTGACTGATGCTTGGCTTGTTTC TAAGGAAGAAGAGCTAAGTTAGGAAAGAATTTTTTTTTTTCAAACAGCAC TCTTCCTATGTTATTCTCTCCTATCTTAGTGGATGACAAAATAATGAACA CAAACATGTTAGCCAGCATAATTCCCACAACAAAAATATTTGTTAATATT TTTTTGCTAGGTACTGTAGTGCTAAGATTGACTAATATAACCTTTTGGAC AGGACTTAAAATTATATTATTTGAAACCTTTCTTTCAACTACAAAGTGTT TGAGCTTGTTCCTGAAAGCATTCTTCATGCCTTTTTAAGCTTCTGATGGT TCATAGTTCGGAAGGGGGTCACTACCCCCCTACCCTAGAGCTACCCCCCT ACCCTCCCTACCCTAGGTTCTTCCCCCTTTTAAAATCTGATGCTACCCCC CTCAAAATTTGCGAAAAAAATAGAATCATTTTGAATCGAATGTTTCAAAC ATACTAAACAATCAATAAAGAAGACGTTGCATTGTAAATTAAAAATAAAA CTTCTAATTTGGGAAAACACAAAAAAAACATACCACTGACATCTTCCCCC CCCTTTCTAGATGAACCCCCCCCTTTCTGAAAACTTCCCCCTTTCTAGAA AAAATTCTCTTCCCCCCCCCCTTTCTGAGATTTTCTGAACATCGCTACCC CCCCTTTATAAAGGGGGGGGGGTGCGAACTATGTTATTGAACCCTGAATA TTCATAAAATTCCTTGAAATCGGAGCAAAAACAGTCTTTGTATTTGATTT TATAAGAGTTTTAAATTTTATTTTTAATGGAAGTTTTGTTTGAGTGATTG ATAATCATTTTAATGCTTCATTTTTTTGTTTTAGAAAATCATTGACATTG GGGACATTGATGAAACTGAGGAACTGTCTTTTGATGAATTTCTGAAATAC TGTCACGATCATGAGCAAAAAGTATGGTTGATATTCAAAAAGTTTGATAC CAATAATTCAGGTAGGATTGAGAATTATATTAAAAATTTAAGGTGTTGGG AAAATTTTTGAAAATAGCATAATGAAATCATATAATATGAAAAAATAAAT TATTCATAAATATCCCGTAGAGTGATTCATCTAATTTATATATATATTAT ATATAAATGTTGTTTTGACCTTTTTAAAAAAAACCCCATGCTCCTATTTT CTGCACAATTTTATTTGATTGCAACAATGAATTTCCCTGTTCATTGATGA CCCAGCTTTACCTTGCACCGTATGCACCTTTGATACAAATTTAGTTTAAA TATTATATGCTTTGTCTTTAGGTACCATCAATAAGAGTGAACTTGAATCT CAATTCAAGCACCTAGGAGTCAAAGTTTCTGAAAGTGAAATCGATATGCT ACTCAAAAAGTATGATCACTTTTCTATCACTTTGCTTCAATTTTTAAACT ACTTTTTAAACAGAGACCAATTTGTAATTTAACACAATAAGATATTTGCC AACTTACCAGAATTGAGTATTGACTGACTTTGTCGGATTAATTTGAAGCA CTGAAAGCTTCCTATATTTTTGTTTTTGACATTTATTAATAGTTTTTTCT ATGCTATAATTTAGGATGGATAAGGATGGTTCATTACACATTGATTGGGA TGAATGGCGCAAATTTCATCTATTGAACCCCCATGCTCACAACATGGCAA ACATCATCAGGTTTTGGAGGCATTCTACGGTGAGTGATTGTCTCATTTTA TTGTCTAAATTTTTAAAGTTTTTTCTAGCCCCCACCTTTCCCCAGTATTG GTCAGACTCTTCTCCTATAACTTGGATCATGTGTTGAAGAAAGAATATTT CAACTTTGACTGGTAATCATAATATGTCGAGAAAACCAAAATATGTGTAG TAAGTATGAGATTTTCAGGCAGAATTTACAACATAATAGAATAATTTGTA ATGAGAGAAGGAGCATCAAAACGACCTCTTTCGATCAAATTCTTTTAATA GTGGTGGTTTAAGTGCTTTTAGCATGACTACACAGTTTTCAAACGACTTG CTCACCTGCAGTGCACTCATCATAATGATTTGCATGCATAGATATCATTT TGTTACCATGGCAATACATTCCTTCCTCATAGGAAAATGTGCCTGAGAAA GAATCGGCTTTATATAGTAAATTGATATTTAATAGAAATGTAATATTTCC AATTACTGCGCTTATTTAATGTTCATTTCTATAATCCTTACCCTCGTAGA AATGTCAT

Coding sequence (CDS) from alignment at sc0000146:460283..465390-

>TCONS_00012654 ID=TCONS_00012654|Name=TCONS_00012654|organism=Clytia hemisphaerica|type=CDS|length=2790bp|location=Sequence derived from alignment at sc0000146:460283..465390- (Clytia hemisphaerica)
TGGTGGTTTAAGTGCTTTTAGGATGGATAAGGATGGTTCATTACACATTG
ATTGGGATGAATGGCGCAAATTTCATCTATTGAACCCCCATGCTCACAAC
ATGGCAAACATCATCAGGTTTTGGAGGCATTCTACGGTACCATCAATAAG
AGTGAACTTGAATCTCAATTCAAGCACCTAGGAGTCAAAGTTTCTGAAAG
TGAAATCGATATGCTACTCAAAAAAAAATCATTGACATTGGGGACATTGA
TGAAACTGAGGAACTGTCTTTTGATGAATTTCTGAAATACTGTCACGATC
ATGAGCAAAAAGTATGGTTGATATTCAAAAAGTTTGATACCAATAATTCA
GATGGCGATCACGAAGCCGGTTGGTGGGACGAGCTCCTCGGATCATCACA
GCAAAAGTAAACTGTTTGAAGGTTACGAATTTGACAAAGAAGGGTTTGAA
AAACTTTTTCACGAGCTTGACGTTAACAAAGATGGTAGGATTGGAGTTGA
TGAGTTATCAGACGGACTCAAAAGATTGGGAATACATCAAATACCAGGAC
AAGCTCAGTGGTGGTTTAAGTGCTTTTAGGATGGATAAGGATGGTTCATT
ACACATTGATTGGGATGAATGGCGCAAATTTCATCTATTGAACCCCCATG
CTCACAACATGGCAAACATCATCAGGTTTTGGAGGCATTCTACGGTACCA
TCAATAAGAGTGAACTTGAATCTCAATTCAAGCACCTAGGAGTCAAAGTT
TCTGAAAGTGAAATCGATATGCTACTCAAAAAAAAATCATTGACATTGGG
GACATTGATGAAACTGAGGAACTGTCTTTTGATGAATTTCTGAAATACTG
TCACGATCATGAGCAAAAAGTATGGTTGATATTCAAAAAGTTTGATACCA
ATAATTCAGATGGCGATCACGAAGCCGGTTGGTGGGACGAGCTCCTCGGA
TCATCACAGCAAAAGTAAACTGTTTGAAGGTTACGAATTTGACAAAGAAG
GGTTTGAAAAACTTTTTCACGAGCTTGACGTTAACAAAGATGGTAGGATT
GGAGTTGATGAGTTATCAGACGGACTCAAAAGATTGGGAATACATCAAAT
ACCAGGACAAGCTCAGTGGTGGTTTAAGTGCTTTTAGGATGGATAAGGAT
GGTTCATTACACATTGATTGGGATGAATGGCGCAAATTTCATCTATTGAA
CCCCCATGCTCACAACATGGCAAACATCATCAGGTTTTGGAGGCATTCTA
CGGTACCATCAATAAGAGTGAACTTGAATCTCAATTCAAGCACCTAGGAG
TCAAAGTTTCTGAAAGTGAAATCGATATGCTACTCAAAAAAAAATCATTG
ACATTGGGGACATTGATGAAACTGAGGAACTGTCTTTTGATGAATTTCTG
AAATACTGTCACGATCATGAGCAAAAAGTATGGTTGATATTCAAAAAGTT
TGATACCAATAATTCAGATGGCGATCACGAAGCCGGTTGGTGGGACGAGC
TCCTCGGATCATCACAGCAAAAGTAAACTGTTTGAAGGTTACGAATTTGA
CAAAGAAGGGTTTGAAAAACTTTTTCACGAGCTTGACGTTAACAAAGATG
GTAGGATTGGAGTTGATGAGTTATCAGACGGACTCAAAAGATTGGGAATA
CATCAAATACCAGGACAAGCTCAGTGGTGGTTTAAGTGCTTTTAGGATGG
ATAAGGATGGTTCATTACACATTGATTGGGATGAATGGCGCAAATTTCAT
CTATTGAACCCCCATGCTCACAACATGGCAAACATCATCAGGTTTTGGAG
GCATTCTACGGTACCATCAATAAGAGTGAACTTGAATCTCAATTCAAGCA
CCTAGGAGTCAAAGTTTCTGAAAGTGAAATCGATATGCTACTCAAAAAAA
AATCATTGACATTGGGGACATTGATGAAACTGAGGAACTGTCTTTTGATG
AATTTCTGAAATACTGTCACGATCATGAGCAAAAAGTATGGTTGATATTC
AAAAAGTTTGATACCAATAATTCAGATGGCGATCACGAAGCCGGTTGGTG
GGACGAGCTCCTCGGATCATCACAGCAAAAGTAAACTGTTTGAAGGTTAC
GAATTTGACAAAGAAGGGTTTGAAAAACTTTTTCACGAGCTTGACGTTAA
CAAAGATGGTAGGATTGGAGTTGATGAGTTATCAGACGGACTCAAAAGAT
TGGGAATACATCAAATACCAGGACAAGCTCAGTGGTGGTTTAAGTGCTTT
TAGGATGGATAAGGATGGTTCATTACACATTGATTGGGATGAATGGCGCA
AATTTCATCTATTGAACCCCCATGCTCACAACATGGCAAACATCATCAGG
TTTTGGAGGCATTCTACGGTACCATCAATAAGAGTGAACTTGAATCTCAA
TTCAAGCACCTAGGAGTCAAAGTTTCTGAAAGTGAAATCGATATGCTACT
CAAAAAAAAATCATTGACATTGGGGACATTGATGAAACTGAGGAACTGTC
TTTTGATGAATTTCTGAAATACTGTCACGATCATGAGCAAAAAGTATGGT
TGATATTCAAAAAGTTTGATACCAATAATTCAGATGGCGATCACGAAGCC
GGTTGGTGGGACGAGCTCCTCGGATCATCACAGCAAAAGTAAACTGTTTG
AAGGTTACGAATTTGACAAAGAAGGGTTTGAAAAACTTTTTCACGAGCTT
GACGTTAACAAAGATGGTAGGATTGGAGTTGATGAGTTATCAGACGGACT
CAAAAGATTGGGAATACATCAAATACCAGGACAAGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007098XLOC_007098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012654-exon-sc0000146-1575043694:464839..465390TCONS_00012654-exon-sc0000146-1575043694:464839..465390Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1575043694:461530..461656TCONS_00012654-exon-sc0000146-1575043694:461530..461656Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1575043694:461132..461219TCONS_00012654-exon-sc0000146-1575043694:461132..461219Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1575043694:460812..460926TCONS_00012654-exon-sc0000146-1575043694:460812..460926Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1575043694:460283..460539TCONS_00012654-exon-sc0000146-1575043694:460283..460539Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1510915933:464839..465390TCONS_00012654-exon-sc0000146-1510915933:464839..465390Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1510915933:461530..461656TCONS_00012654-exon-sc0000146-1510915933:461530..461656Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1510915933:461132..461219TCONS_00012654-exon-sc0000146-1510915933:461132..461219Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1510915933:460812..460926TCONS_00012654-exon-sc0000146-1510915933:460812..460926Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1510915933:460283..460539TCONS_00012654-exon-sc0000146-1510915933:460283..460539Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1491911889:464839..465390TCONS_00012654-exon-sc0000146-1491911889:464839..465390Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1491911889:461530..461656TCONS_00012654-exon-sc0000146-1491911889:461530..461656Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1491911889:461132..461219TCONS_00012654-exon-sc0000146-1491911889:461132..461219Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1491911889:460812..460926TCONS_00012654-exon-sc0000146-1491911889:460812..460926Clytia hemisphaericaexon
TCONS_00012654-exon-sc0000146-1491911889:460283..460539TCONS_00012654-exon-sc0000146-1491911889:460283..460539Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012654-proteinTCONS_00012654-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000146supercontigsc0000146:460283..465390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5641 12.6278 1.76221 1.84729 19.2404 16.1461 14.2722 13.6829 11.2327 12.742 10.2034 8.00303 9.099 8.85298 7.8429 11.2907 8.61993 9.63602 6.1234 9.35884 11.1389 10.4166 15.5277 15.5882 51.1155 38.1258 5.75757 5.30339 15.497 18.2779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00012654 vs. Swiss-Prot (Human)
Match: SCMC1 (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.517e-31
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = 1
Query:  439 FEKLFHELDVNKDGRIGVDELSDGLKRLGIHQIPGQAQKXXXXXXXXXXXXLSFDEFLKYCHDHEQKVWLIFKKFDTNNSGTINKSELESQFKHLGVKVSESEIDMLLKKMDKDGSLHIDWDEWRKFHLLNPHAHNMANIIRFWRHST 882
            +E LF  LD N DG + + EL +GL+ LGI       +KI   GD+++  +L F+EF+KY  DHE+K+ L FK  D NN G I  SE+    + LG+ +SE + +++L+ +D DG++ +DW+EWR + L NP   ++  IIRFW+HST
Sbjct:   24 YETLFQALDRNGDGVVDIGELQEGLRNLGIPLGQDAEEKIFTTGDVNKDGKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQSIDVDGTMTVDWNEWRDYFLFNP-VTDIEEIIRFWKHST 170          
The following BLAST results are available for this feature:
BLAST of TCONS_00012654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCMC12.517e-3142.57Calcium-binding mitochondrial carrier protein SCaM... [more]
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