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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012815 ID=TCONS_00012815|Name=TCONS_00012815|organism=Clytia hemisphaerica|type=transcript|length=707bp
AAGGATAAGACTTAGGTCTGTAGATTTTCTTAGAATTAAAGAATGCGTTT
AACGGATGTTACCTACGAAGCTTCACTAGAAACAAATCACAACAACGAAA
ATATGACTTCTTTAAGCTGGAATGAATACTGTGTGTTTTGAAAGATGTTT
GTTGTGAAGGGAAACTGACAATGAATTCATTAATTGAAAATGGCTGCTCC
AGAGGATAATGATCATTTAATACCAGaaactgGTGCAGTATTTACATTTG
GTAGAAGTCGGTTTGCTGATaatttagcaaacaaattttgGATAAAGAAT
GATAAGTGTGTAAAGATAGCATGTGGTGACCAACATTCTGCTGTTGTTAC
AGAACGTGGCAGAGTTTATGTATTTGGAAATAATGAGTGGGGACAATTGG
GGTTAGGACACACTAAGGCAAGCAATAAACCATCTTTTATCAAAGttttg
aagcCAGAGAAATGTTTATCAGTATCATGTGGAAGAAGTCACACTTTGCT
TTATACTCAATCAGGGAAACTTTTTAGTTTGGGTGGAAACGAAGATGGCC
AACTTGGACACGGTGACCGAAATaatGAGACTTCACCCAAACAAGTTGAA
GAATTAGAATCAGTcaaattgaaagaaatctctTGTGGAGCAAATCATTC
TGNCGATTTTTCATGCATGGAAACACATCACTTGGGTGGATTTCCAGATC
TTATTGT Run BLAST on NCBI protein sequence of TCONS_00012815-protein >TCONS_00012815-protein ID=TCONS_00012815-protein|Name=TCONS_00012815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MAAPEDNDHLIPETGAVFTFGRSRFADNLANKFWIKNDKCVKIACGDQHS
AVVTERGRVYVFGNNEWGQLGLGHTKASNKPSFIKVLKPEKCLSVSCGRS
HTLLYTQSGKLFSLGGNEDGQLGHGDRNNETSPKQVEELESVKLKEISCG
ANHSXDFSCMETHHLGGFPDLI Run BLAST on NCBI transcript from alignment at sc0000156:115330..125616- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012815 ID=TCONS_00012815|Name=TCONS_00012815|organism=Clytia hemisphaerica|type=transcript|length=10287bp|location=Sequence derived from alignment at sc0000156:115330..125616- (Clytia hemisphaerica)
AAGGATAAGACTTAGGTCTGTAGATTTTCTTAGAATTAAAGAATGCGTTT
AACGGATGTTACCTACGAAGCTTCACTAGAAACAAATCACAACAACGAAA
ATATGACTTCTTTAAGCTGGAATGAATACTGTGTGTTTTGAAAGATGTTT
GTTGTGAAGGGAAACTGACAATGAATTCATTAATTGAAAATGGCTGCTCC
AGAGGATAATGATCATTTAATACCAGGTTTCTATTTTTAATGCACTATTT
TTTTTTTTCAAGTACTTTCGACAACATGCTAATTTTTCATTTCTTTTGTC
TTTCTTTCCCTAAAAAGTTTTATTCATATTAGTCATAGCATAGGCAATGG
TCATTTGCAAATCACAAGTAGGGAAAATATTGAATCTACCCTTTGATTGC
GGTTACTGTGATAGCCTGATTGGGTTCTTTCTTTCCGTCAGTCAGGCACA
TCCCCAGACGATGTCGATGTCAATCGAACAGAATCGAACGAAAATTCCAA
TCGAACGCAATCGAATGATTGCGATTCGATTGCCGAACACAATCGAATAT
CAATCAAACATCAAATTCTGGGTAAAATTCGATTACGTTCGATTGATATT
TCGATTACGTTCGATTGATATTCGATTACGTTCGATTGATATTCGATTGT
CATTTCGATTGATGTTCGATTAGGTTCGATTGATATTACGTTTGACAGGT
GGTCGATTTAATTAGATTCCAATTTACCTCAATATTCCTTTCAATTTCGA
GCGCCTCTTATCCAGACCCCCGCGCTCGATAGGATCGATCATCGGAACGG
CTCGATGACGGATCGATATGTGATCGATGGATTACTTATCGATCCGGATA
GGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCATCGATCATTAA
TCGATTCGTCATCGATCATTAATCGAGTATGCATCGATTATAAATCGATT
ATAAATCGAGCTAGGGCTCAGGTGAAATTCCGTAATCTAAACCTTCCAGC
AGATGTTGAAAGTTTCCCCGACCTTTTCCCAGAGCTTTCTTAGCGTGTCG
GAAGAAAATTTCTACATCGGGTGCCAGATAAGTACCGATAAGTAAATCCG
GTTTGACGCCATTAGATCGATTAATCAATATAAAAACGGTTGATATTTTG
ATTGGATCGATAGAGGTGTCGATAGGTAATCGATAGGTATCGATAGGTGT
CGATAGGTAATCGATAGGTGTCGATAGGTAATCGATAGGCGTCGATAGGT
AATCGATAGGTGTCGATAGATAATCGTTAGCAAGAAAGATCGATTATTAT
TATTATTAGAGCTCGATTTTTAGAAAGAGTCGATAGGGTTGATAAGATCG
ATAAAAGATCGATGATAGATCGATGATAGATCGATAACTAATCATAAGCT
TAAAAAAATCTTGAGTATCGATCCTCTATCGATCTCTTATCCGGATCGAT
AAGTAATCCATCGATCACATATCGATCCGTCATCGAGCCGTTCCGATGAT
CGATCCTATCGAGCGCGGGGGTCTGGTCTTATTAGGGAGGTTAAGTATCG
ATACAATAGGTAAATCAACGCAACGAACGGGCTTTGACACACAACCTGCA
GTAAACATGTGGGCCTGCATGACCTGCATTTTCTAGAATCCAGGCTAAGA
TGATTTATATCATCTCGTTTAACTCTTCAAATGTTGAACGAGAATCAACG
TTAACCAACAGAATCAATTAGTCGAACCAGTCGAATGCATAATATAAGCC
AACCGAACGTTAGTCGAACACAATCGAATCAATCGAATCCAGGCACTAAT
CGAACGCAATCGAATCAATTGAGAAAATTGCGGTAATATTCAATTGGCAT
TCGATTACGTTCAGCAATCGAATTTCAATCATTCGATTGCGTTCGATTGC
GTTCAATTGATTCGGCGTTCGATTCGTTCGATTGGCATCGTCTGGACATC
CTGGCAAATGAACCGGGTGAGCATTTGCATGGGGTATTCGCCACCCAGTG
TAAATGAGATAGGACGTCTCAGGCTAAAAGCGTGAAAATGAATAAAAATG
AACTTCAAACTGAAAAAGGGAAAAAATAAAAGGAAGAAAACTGGGAACTT
TATTTTTTCGTTAAAAGTTTCTTCAATCTTCAAAGACAAAATTGACCCAT
GGAAAAAAAAATTTCATCTATGCAGTTCTTTGAAATGAAGCAAAATATTT
CCAACCCGGTTCAATTAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCGCTATTACGTCACTTTCATTTTCGACCCC
GTTCATTTGCCAATGGTCGCAAGTGAAAAATACCCCGTTCATTTGCCAGG
ATGTGCCTGACTGTCCGTGAATGGTCCTAAGAAGGCGAGGCCGAGAGGGG
AATTTTATGTTCTGTTTAGGCGAGGGGAATTTAATGTTCTGTTTACCGTC
GCGTTGCAAAAAATATTTGATGCGGCAAAATTTCATTATTCATTATTCAT
TATTCCTACCTGGTGCTTCCCATCTCCAACGAAGTTGAATTCCACCGTGA
AATCGAGCTGCTTTCACTTTCGGAATCAAAATGACATGCGCGAAAATTCA
AACGTGTTCGAGACGCGTCTCTAAAACGCGAATTTCTACAACACCCTTTT
AGCCGCCCACTGCTTAAAAAAATACCTGCCCCATTCGCGGACGTGATTGG
AACCATTTTTTTACTTGAGGCGCACATTTTGTTAGCGAAGATGTTATTTT
TTATTCACTTTGAGTGTTTTGGATAGCTTGGCACAGGATGCTGGCAGTTG
ACGGTAAACAGAACATCAAATTCCCCTTGCCTTACCGTCGACCGCCCGTC
GAGTAAGAGTTTGGCCATAACGAATAATTGCAATTCGATTGTCGAACGCA
ATCGAATCGCAATCGAATCGCAATCGAATATTACCCAGGATTTGCCGTTC
GATTGCTTCGATCACGTTCAATTGTATTCGATTATGTTCGATTGATTTAG
ATATTATTCGCTTTCGTACAATACTTAATAAGCGCTCGGCCGCCCACGCT
AAAAAGCTCTAACAGAGTGATCCAATTTAATTTAATCGCAATCAAACTCA
TCAAACATAATTGTAATCGAACCAATAGAACATAGTCAACTGTTAATCGA
ACCAATCTAACCTTATTCGAACGCAATCGAACACAATCGAATATTACCCG
GAAATTGGCCGTTCGATTGGGATTCGATAAGCAAATCACAATTATTCGAT
CGCGTTCGATTACGTTCGATTGGTTCGATTGCGATTTTTGTTCGAAGTTG
TTTGATTGACACCGTCTGGCTTTACGTCTTGCCTATCCAAAAGAAAAGTA
CAAAAAGTTATTCAATTCTTTCTTGGAAAAAGTCCTTTTTAAGGATCTTA
GGTTTACTCCCCGGCATTAAGACAAAGATGTTATGAAATTTCAACCTTTT
TTTCACAAGATAAGAAAAAGAAATATGTTATATTCATTGGCACTCTGCTG
GCTTTTTAAGCTCAAAAGTTAGAGGTTAGCAAGATTTTTGAGAAATCGCA
AAGTTTTGTTTACAAAATTGAAACATCCACGATGGCTTGTAGAAATATGC
TCTCCATCCGTGTTGCTCCATTTTTCAATCTCACCATTCTGGTCTGTAAA
ATGCATAATTTTGAGAAAAAAATAAATAAATAAAAACTTTATCTCAGGAA
CCTTCCTACCAAGTTTCAATGCTGCAGCATTAATAGAAATAAAATTAAAT
TAATAAAAGTGTGTTTTTTGACATAACACACAGATTTTTTGTTTTAAAAC
TATGATTTTTTCAAAAACCTTCAAAAATTGTTCTTAATAAAAGTGGTATT
TTCATGAGATAAAAATTTTTATATCTCACAAACGGCTTGACCAATTTTGA
TGTTAATGACCCCTCATTTTTTTTCTTTTTTGAAGCTCTTTCAAATGAAC
ATACTCTCAACAGGTAGAAAAGGTCCCTACTTTAATCAAATACTCTTAAA
TTCTTCAAAATATATAAAGTTCGATTAAGTTCGACTAAAGAAATCGAACT
TAATCGAACTTTTTTACAAATCAAAATAGACCTTAAAATATAATAGTTTA
ATAATAGCTTTTATTGGACCTAACCCGGTGGAGGTCCTATAAATTAACCT
TTGTCCGTTCGTTCGTCTGTTCGTTCGTTCGTTCGTCTGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTTGTTCGTTCGTTATTAGCTTTCC
TCATGATTGGCTCGTTAGTTTTTTCTGATTTTTTGCACAAAGATGCATAA
CTATAAACCCTCGAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAAAAAAAAATT
TTGGGGCAAATTTGGGCCAAAAAACGGCTAAAAAACTGGTTTTTTGGACT
TTGTGAAAAATTAGGTCGTTAATTTTTTCTGATTTCTTGCATGAAAGTAG
GTAAAAGATGGCTTAAGCAAATTTTTGCAAAAAAATTTTGTTGGCTCAAA
AAACGCATGTTTATCTGTAAGAATCACTATTAATAAGCATACATCAATGT
TCTTGGTTAAATTACTCAATTTTTTTATGAGATAGATGTTTTTTTGCTCA
TTAAGTTAATATTTCAGGAGTATGAAATGACGTTTTTTTAATAAGAAACA
AACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTT
AATGGTCACGCTCACGTAAATCAATTTTATATGTGTTAAATGCATAACCA
GGTAGGTCCATAAAAGTATCACTTGTTATTAATGATACACCCATGCTACC
CATACGCTCCATCTCATAAATTATTCAAATTGGCAAAACTTAACTTTTGA
ATAATGTTATTGTACACAACATGATATTGTATTTCTTCACCACAAATATA
AAGAGAGTGTTTGTTTATTATACGAATGGCGCCCTGTCAAGTGCTAACCA
ATTCATCCCAAAACTAGTTAAAGCGATTGTCTTGTATTCAATTGAAGTTC
CTCGTAGAAACACTCGCGAATTAGACCCCACTTGTAGAGTCCTACATTTT
ATTTACACGATAGGTTCCATTTGGAAGATTATTTATTTTAAAATCATTCT
AAATCTTTCCAATTCACCCCGTCTTTAAATAAGGTATATATATTCATAGA
ACTCAACGAAAATGCTTTTTAGTATATAAAAAAAACAAAGCTCAATGATA
TTCATGGATTTCCATATTATATAATAATTTGATATTTTTGATTTCAAATT
TATTAGCAGAATTTCTGTTGAAGCTGTCGAACTTGGCCAAACAGAATTTT
TGTCGAATTTTCATTTGTTGAACGTTTTTGTCGTTGAACTTTGTTGAAAG
AAGTTTTTGCCGACTTTGTCAAACCTTTCTTGTTTTCAACTTTGTCAAAC
GTAGATTTTAATTGAATTTGTTAAAAAAAATTTTGCTGTCAAACTTTGTC
GAAAAGATTACTAAGTTTTTTTAAGATTGCAAAAAAATGCCACATAGAAG
AATTCACTATGTCAATAGAGCAGTAAAAAATAAACTTTCTTATTTTTCCA
TTTCTTTGCAAAAGTTCCAGAAAGGAAAATAAAGGAATAATAATGATAAT
TGAATACTCACACTTATCAAGTGTTTGATTATTCACAGATATAATCGATT
GATTAACAATTCAATTGGCAAGTTTGCTAAATTGTGTGTGTAAAGAGGGT
GTACGTGGGTTGCATGGGTCAAAAAATCTTTTGTGCGGGTCAATTTTTTT
TGTGGGTCAAATTTTTTGCGTTGGTCAATTTTTCATGTTAGTCAATTTTT
TTACATGGGTTAATTTTTTTTGCATGTATTAGTATAGTTATTGAAAAACG
TTTGCAGCAGGTATTTCACCTCATCAAATTAATTTGCAAGTTGGAAGCAA
AAAGAGGATTGGTTCTTGGTGATCAGACGACTTGCTGCAACAGAATTCCT
GAGTTAGAATACTTCAATTTGAAGATGAAAAGGCCCAATATTAGACCTTT
GGGCAAACGTGACGGTCTATTTAATAACAAATTACTACAGCATACATCCA
TTACTTGCCTTCCTTTTGACAAATATAATATATACAGGATAATTTTGTCT
CCAGGTAACTAACCGTTGTCTCGTTAATTCACAGTTAGATGGCATTACCA
TTGAAAAAAATTATTTTTTTAGAAACTGGTGCAGTATTTACATTTGGTAG
AAGTCGGTTTGCTGATAATTTAGCAAACAAATTTTGGATAAAGAATGATA
AGTGTGTAAAGATAGCATGTGGTGACCAACATTCTGCTGTTGTTACAGGT
GAGTCCAGCACTATCTTTATTTATAAAATTTCTCCTTATGATTTATGTAC
ATTTCGCACTCCACACTGTATAGACAGTTTTGAAAAGAACTAAACAACTG
CCTAAATTTGGAGTGATTTTATTTGCTTTTAAACTTTTCTATCTTTAAAC
CCTATTAGCCCCAAGCTTTTTTGACTTAATTGTATCCCCAGGGGGGGTAG
AATCTACCACCCTCGATTATTTTCGATCTAGAAGAGCTACGGCCATGAAA
TTTGGTACAGATGTTCTCCATCATGATACAATTTTCCAGGAAGAAAAAAA
AATTGATGACGTCATTCAAAAACTGATGACGTCATCACAAAATTTCCACC
TGTCGGAAAAAAGCCCAAATATATGGTTTACAAAAATGTCTATTACAGAC
GAACCAATAAAGATATTTCGATTCTGTTTGAAGATTCTGAAAGGTAAAAG
ACTGTTCTTTAACATAATTGCCGGTTTTGCAATTTCCAATATTTCTTAAA
ATCTATGCTGAAGATGAGTAAAATTTTCAAAATTTGATGACGTCATAAAT
GATGACGTCATCATTTTCAAAAATTTTCTTTAGATTTTTTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCCCCCCCTGGGGCTAATAGGGTTTAAATGGATAACATGCGGGG
TTCCGTTCAGATTTTTTGAAAAATAAGGGGCATTTATGGTGTCAAAGGTG
ATTGTATATTGCTTGTAAATTGTTGTTCTAAAGATATGATCAATTAAAGA
GAATGTGTCAAGAAAGGTGGACACATACTTACCTTAAACAGCTTACTTTT
TTGATTTTGAGGTACAAAAGGTTGTTGTTACTCGCTAAGGATTTTTGGAA
ATCCCTAAATGTTTATTTTGAAAAGATATTTGTGCAGTGGTAAGAATTAC
TTATAGTAGATAATATTATATGTTGGTGAATTTGAATTTAATTTTAAATT
AAAACAAAACTTTCTTTTCTTTGTAGAACGTGGCAGAGTTTATGTATTTG
GAAATAATGAGTGGGGACAATTGGGGTTAGGACACACTAAGGCAAGCAAT
AAACCATCTTTTATCAAAGGTAAACCGATTTTTCATGCATGGAAACACAT
CACTTGGGTGGATTTCCAGATCTTATTGTAAAGATCAGTACCTTAAAGGA
AGAAATTTTGGCGAGAATTTAATTTGGCGGGTGGCCGAAAAAGTTTTTTT
AGAGGGAATTTAATTTGGCAGTTAACTTGAAAAATTAAATTTGGCAGGAA
TTTAATTTGGCGGATGAAGGAAATTTTTTTGTCCAAAAAACGCCATTAAA
AAAAGAAAAACCTGCTTTAAAGCCTGGAATAGCACANTTTGGCGGATGAA
GGATATTTTTGTCCAAAAAACGCCATTAAAAAAGGAAAAACCTGCTTTAA
AGCCTGGAATAGCACACATTTGGGGGAGTAAATAGAGCAATTTAAATTTG
GCGGGAATTTCATTTGGCAGATGACAGAAAAAAATAAATATGGTAGGAAC
TTATTTTCCTCCTAAAATCTGCCAAATTAAGTTCCCGTCAGTTCCCGCCA
AAATTTCTTCCCTTAAGGTATGCTTTTCATGATGTTTGAGGCTTTTTGGA
CGAATTATTATTTTTATGATTTTATTAAAATAAAATTTGATTGTCATTTT
TTTAGTTTTGAAGCCAGAGAAATGTTTATCAGTATCATGTGGAAGAAGTC
ACACTTTGCTTTATACTCGTGAGTGAAAAATTATTGTAAACGTCTTCAAT
TAAAATTCAAATTTAGCCTCAAATATCAACATTAACTAAGCTTAGCCTTG
ATTGTACCTTTTAAGCCATTGGATGTATAATTCAAACCAGGTTCAAACAC
ATAATATGAGACAATCAATAATCTAGGTGTTTTATGTTTTTGGTACTTGT
CTCAAACTTAGTTGCTTTACTGTGTACTTTTAAATTTCTCTTAGAATCAG
GGAAACTTTTTAGTTTGGGTGGAAACGAAGATGGCCAACTTGGACACGGT
GACCGAAATGTAAGTAATTTCTTTTTTCAAGTCGCAGGGAGGATTATTCT
TTTGTAAGCTCGGGTGAGCATTTTCTTTTTTATTTTGTTTGCCCACTCGA
GAGAATGCTTTTTAACTTTTAGGAAACATATACATCATGTAGATTGTTGT
AAGTATAGTGATATTGGGAGTATTCACATATTTCTTTTTAATTTTCTTTT
TAGAATGAGACTTCACCCAAACAAGTTGAAGAATTAGAATCAGTCAAATT
GAAAGAAATCTCTTGTGGAGCAAATCATTCTGNCGATTTTTCATGCATGG
AAACACATCACTTGGGTGGATTTCCAGATCTTATTGT Coding sequence (CDS) from alignment at sc0000156:115330..125616- >TCONS_00012815 ID=TCONS_00012815|Name=TCONS_00012815|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000156:115330..125616- (Clytia hemisphaerica)
AATGAGACTTCACCCAAACAAGTTGAAGAATTAGAATCAGTCAAATTGAA
AGAAATCTCTTGTGGAGCAAATCATTCTGNCGATTTTTCATGCATGGAAA
CACATCACTTGGGTGGATTTCCAGATCTTATTAATCAGGGAAACTTTTTA
GTTTGGGTGGAAACGAAGATGGCCAACTTGGACACGGTGACCGAAATTTT
TGAAGCCAGAGAAATGTTTATCAGTATCATGTGGAAGAAGTCACACTTTG
CTTTATACTCAACGTGGCAGAGTTTATGTATTTGGAAATAATGAGTGGGG
ACAATTGGGGTTAGGACACACTAAGGCAAGCAATAAACCATCTTTTATCA
AAGAAACTGGTGCAGTATTTACATTTGGTAGAAGTCGGTTTGCTGATAAT
TTAGCAAACAAATTTTGGATAAAGAATGATAAGTGTGTAAAGATAGCATG
TGGTGACCAACATTCTGCTGTTGTTACAGATGGCTGCTCCAGAGGATAAT
GATCATTTAATACCAGAATGAGACTTCACCCAAACAAGTTGAAGAATTAG
AATCAGTCAAATTGAAAGAAATCTCTTGTGGAGCAAATCATTCTGNCGAT
TTTTCATGCATGGAAACACATCACTTGGGTGGATTTCCAGATCTTATTAA
TCAGGGAAACTTTTTAGTTTGGGTGGAAACGAAGATGGCCAACTTGGACA
CGGTGACCGAAATTTTTGAAGCCAGAGAAATGTTTATCAGTATCATGTGG
AAGAAGTCACACTTTGCTTTATACTCAACGTGGCAGAGTTTATGTATTTG
GAAATAATGAGTGGGGACAATTGGGGTTAGGACACACTAAGGCAAGCAAT
AAACCATCTTTTATCAAAGAAACTGGTGCAGTATTTACATTTGGTAGAAG
TCGGTTTGCTGATAATTTAGCAAACAAATTTTGGATAAAGAATGATAAGT
GTGTAAAGATAGCATGTGGTGACCAACATTCTGCTGTTGTTACAGATGGC
TGCTCCAGAGGATAATGATCATTTAATACCAGAATGAGACTTCACCCAAA
CAAGTTGAAGAATTAGAATCAGTCAAATTGAAAGAAATCTCTTGTGGAGC
AAATCATTCTGNCGATTTTTCATGCATGGAAACACATCACTTGGGTGGAT
TTCCAGATCTTATTAATCAGGGAAACTTTTTAGTTTGGGTGGAAACGAAG
ATGGCCAACTTGGACACGGTGACCGAAATTTTTGAAGCCAGAGAAATGTT
TATCAGTATCATGTGGAAGAAGTCACACTTTGCTTTATACTCAACGTGGC
AGAGTTTATGTATTTGGAAATAATGAGTGGGGACAATTGGGGTTAGGACA
CACTAAGGCAAGCAATAAACCATCTTTTATCAAAGAAACTGGTGCAGTAT
TTACATTTGGTAGAAGTCGGTTTGCTGATAATTTAGCAAACAAATTTTGG
ATAAAGAATGATAAGTGTGTAAAGATAGCATGTGGTGACCAACATTCTGC
TGTTGTTACAGATGGCTGCTCCAGAGGATAATGATCATTTAATACCAGAA
TGAGACTTCACCCAAACAAGTTGAAGAATTAGAATCAGTCAAATTGAAAG
AAATCTCTTGTGGAGCAAATCATTCTGNCGATTTTTCATGCATGGAAACA
CATCACTTGGGTGGATTTCCAGATCTTATTAATCAGGGAAACTTTTTAGT
TTGGGTGGAAACGAAGATGGCCAACTTGGACACGGTGACCGAAATTTTTG
AAGCCAGAGAAATGTTTATCAGTATCATGTGGAAGAAGTCACACTTTGCT
TTATACTCAACGTGGCAGAGTTTATGTATTTGGAAATAATGAGTGGGGAC
AATTGGGGTTAGGACACACTAAGGCAAGCAATAAACCATCTTTTATCAAA
GAAACTGGTGCAGTATTTACATTTGGTAGAAGTCGGTTTGCTGATAATTT
AGCAAACAAATTTTGGATAAAGAATGATAAGTGTGTAAAGATAGCATGTG
GTGACCAACATTCTGCTGTTGTTACAGATGGCTGCTCCAGAGGATAATGA
TCATTTAATACCAGAATGAGACTTCACCCAAACAAGTTGAAGAATTAGAA
TCAGTCAAATTGAAAGAAATCTCTTGTGGAGCAAATCATTCTGNCGATTT
TTCATGCATGGAAACACATCACTTGGGTGGATTTCCAGATCTTATTAATC
AGGGAAACTTTTTAGTTTGGGTGGAAACGAAGATGGCCAACTTGGACACG
GTGACCGAAATTTTTGAAGCCAGAGAAATGTTTATCAGTATCATGTGGAA
GAAGTCACACTTTGCTTTATACTCAACGTGGCAGAGTTTATGTATTTGGA
AATAATGAGTGGGGACAATTGGGGTTAGGACACACTAAGGCAAGCAATAA
ACCATCTTTTATCAAAGAAACTGGTGCAGTATTTACATTTGGTAGAAGTC
GGTTTGCTGATAATTTAGCAAACAAATTTTGGATAAAGAATGATAAGTGT
GTAAAGATAGCATGTGGTGACCAACATTCTGCTGTTGTTACAGATGGCTG
CTCCAGAGGATAATGATCATTTAATACCAGAATGAGACTTCACCCAAACA
AGTTGAAGAATTAGAATCAGTCAAATTGAAAGAAATCTCTTGTGGAGCAA
ATCATTCTGNCGATTTTTCATGCATGGAAACACATCACTTGGGTGGATTT
CCAGATCTTATTAATCAGGGAAACTTTTTAGTTTGGGTGGAAACGAAGAT
GGCCAACTTGGACACGGTGACCGAAATTTTTGAAGCCAGAGAAATGTTTA
TCAGTATCATGTGGAAGAAGTCACACTTTGCTTTATACTCAACGTGGCAG
AGTTTATGTATTTGGAAATAATGAGTGGGGACAATTGGGGTTAGGACACA
CTAAGGCAAGCAATAAACCATCTTTTATCAAAGAAACTGGTGCAGTATTT
ACATTTGGTAGAAGTCGGTTTGCTGATAATTTAGCAAACAAATTTTGGAT
AAAGAATGATAAGTGTGTAAAGATAGCATGTGGTGACCAACATTCTGCTG
TTGTTACAGATGGCTGCTCCAGAGGATAATGATCATTTAATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012815-exon-sc0000156-1575043694:125391..125616 | TCONS_00012815-exon-sc0000156-1575043694:125391..125616 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1575043694:118869..118994 | TCONS_00012815-exon-sc0000156-1575043694:118869..118994 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1575043694:116598..116690 | TCONS_00012815-exon-sc0000156-1575043694:116598..116690 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1575043694:115949..116011 | TCONS_00012815-exon-sc0000156-1575043694:115949..116011 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1575043694:115658..115722 | TCONS_00012815-exon-sc0000156-1575043694:115658..115722 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1575043694:115330..115463 | TCONS_00012815-exon-sc0000156-1575043694:115330..115463 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1510915933:125391..125616 | TCONS_00012815-exon-sc0000156-1510915933:125391..125616 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1510915933:118869..118994 | TCONS_00012815-exon-sc0000156-1510915933:118869..118994 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1510915933:116598..116690 | TCONS_00012815-exon-sc0000156-1510915933:116598..116690 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1510915933:115949..116011 | TCONS_00012815-exon-sc0000156-1510915933:115949..116011 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1510915933:115658..115722 | TCONS_00012815-exon-sc0000156-1510915933:115658..115722 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1510915933:115330..115463 | TCONS_00012815-exon-sc0000156-1510915933:115330..115463 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1491911889:125391..125616 | TCONS_00012815-exon-sc0000156-1491911889:125391..125616 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1491911889:118869..118994 | TCONS_00012815-exon-sc0000156-1491911889:118869..118994 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1491911889:116598..116690 | TCONS_00012815-exon-sc0000156-1491911889:116598..116690 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1491911889:115949..116011 | TCONS_00012815-exon-sc0000156-1491911889:115949..116011 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1491911889:115658..115722 | TCONS_00012815-exon-sc0000156-1491911889:115658..115722 | Clytia hemisphaerica | exon |
| TCONS_00012815-exon-sc0000156-1491911889:115330..115463 | TCONS_00012815-exon-sc0000156-1491911889:115330..115463 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000156 | supercontig | sc0000156:115330..125616 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012815 vs. Swiss-Prot (Human)
Match: RPGR (X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2) HSP 1 Score: 155.221 bits (391), Expect = 2.070e-42 Identity = 76/155 (49.03%), Postives = 107/155 (69.03%), Query Frame = 1
Query: 190 MAAPEDNDHLIPETGAVFTFGRSRFADNLANKFWIKNDKCVKIACGDQHSAVVTERGRVYVFGNNEWGQLGLGHTKASNKPSFIKVLKPEKCLSVSCGRSHTLLYTQSGKLFSLGGNEDGQLGHGDRNNETSPKQVEELESV-KLKEISCGANHS 651
M PE+ L+P++GAVFTFG+S+FA+N KFW KND V ++CGD+HSAVVT ++Y+FG+N WGQLGLG A +KP+ +K LKPEK +CGR+HTL+ T+ G +++ GGN +GQLG GD + + S K+K++S G+N S
Sbjct: 1 MREPEE---LMPDSGAVFTFGKSKFAENNPGKFWFKNDVPVHLSCGDEHSAVVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTSEHKIKQLSAGSNTS 152
The following BLAST results are available for this feature:
|
