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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012847 ID=TCONS_00012847|Name=TCONS_00012847|organism=Clytia hemisphaerica|type=transcript|length=4292bpRun BLAST on NCBI protein sequence of TCONS_00012847-protein >TCONS_00012847-protein ID=TCONS_00012847-protein|Name=TCONS_00012847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=929bp MSMLLSPKIIPGSLHAANKSACDWGWQGYVAYGCQNYVVVVDPKTSQVLQRun BLAST on NCBI transcript from alignment at sc0000156:370500..399507- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012847 ID=TCONS_00012847|Name=TCONS_00012847|organism=Clytia hemisphaerica|type=transcript|length=29008bp|location=Sequence derived from alignment at sc0000156:370500..399507- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000156:370500..399507- >TCONS_00012847 ID=TCONS_00012847|Name=TCONS_00012847|organism=Clytia hemisphaerica|type=CDS|length=36270bp|location=Sequence derived from alignment at sc0000156:370500..399507- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012847 vs. Swiss-Prot (Human)
Match: WDR11 (WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1) HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0 Identity = 345/947 (36.43%), Postives = 552/947 (58.29%), Query Frame = 1
Query: 52 LSPKIIPGSLHAANKSACDWGWQGYVAYGCQNYVVVVDPKTSQVLQTLQNHAAPICGIKWHQEKFYHDLHSPYDLKLAAANTAGYILIWDIRAGALLNDFVEANKLPVCMEWLTGHDVSHDLLLVLYNPNVMILWNSDTGVKLWKKTFTDTVVQMVIDPFKNTNMTVMSTDWIMLVTDLSLSQAPSEKGRKFYMSNNAASPXXXXXXXXXXXXXXXXXXQTKSTIQRIKSVYGDLRGGKTEEEIEATCDCLQIAYLKASRNHVLILFPREILILDMEIGQSLGSFSIESTSPSFQAVYPCQQRDILFLLHENGSISMRAVRSPPAVPYMEDDDPERVLSQRISLDIIYDIKCHSDVFRLSRASRLMGFCVDPVYECQNVIILGDGRCLFWALSPPAGASSFHKENLKWKSLPDF-------VEIDRFKNEYEQISLNEVIPCLLSFGDDQMKKKYSKP---RFVLEGMSESIALNPVCCRMCPPMTTRNFSTYRPLLAVGCNNGILQIFNLSKGNLVKHLMMTTHSIKGLEWISLSSILVWFQGSSTNN----KSEIVHVDINTGLTKVLPSSRGLKESTVASLKVSQVKNYFLVLFKNKSAELWDATNLCQLREFPGNFPTITAFGWSPAXXXXXXXXXXXXXNAPRDAASAPDLSETVSSKVLDSSV--------NXXXXXXXXXXXXHLVFTDTDGTVYHYVVEGTSLKDGSKVPPEAGMGTVSYITWKQDVLVLGDIDGNVNFWDLKGKVSRVFPTNRGPIKRLKFAPGKGNMRILMLFNDGVEIWDSVEIRSLANIKTSKD-GIAILDADWXXXXXXXXXXXXXXARVMDPVLTSANSNVQEKDLDQALFNPRLLEPAHSLKMKGVLQHQKWREQYKAK----EFSDSRE-ERAVQDSLDNMPEDICDRLENCPLGTAERCSKVARIYGDESDVLFWNVALH 2808
+S + + G+L+A NK+A DWGWQG +AYGC + VVV+D T+Q LQ L+ H A + +KW +E ++H++ SPY L+LA+A+ G I++WD+ AG + E K ++WL D S DLLL ++ PN ++LWN+DTG KLWKK++ D ++ DPF +++T+++++ I+ ++D S S+ PS G+K Y+S+ +SP+ + +T+T K + ++K + + K E DCLQ+AYL + RNH+L+L+PREILILD+E+ Q++G +IE T F V PC QRD LF LHENG I++R RS + +++P+ Q ++ YD++ D R+++ R PV E +++ DGR + W L + + + N P + + + +N+ +SL+ +I G++ + + +F+L G+ + RMCPP+TT+N Y+PLLAVG +NG + +++L+ G L K L + + +KG+EW SL+S L F S+ NN ++E+ VD+ TG + RG ES + +KVS +K Y V+F++K ELWD LRE NFPTITA WSP+ KK+ A R+A + + +++SSV +K + +EH VFTD DG VYH VEG S+KD +++PP+ MG+++ I WK D LVLGD+DGN+NFWDLKG+VSR PT+R +++++FAPGKGN +++ ++NDG E+WD+ E++ ++++++ ++ ILD DW +S +L DG RV++ + SA + E++L + ++ P LL P SL +K L HQ W QY ++ ++ E + +Q+ L+++ DI L + +RC V+R+YGDES++ FW VA H
Sbjct: 10 VSARTLTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQTLQVLEKHKADVVKVKWARENYHHNIGSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILSFSFDPFDPSHLTLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATG---------AKKALNKVKIL---ITQEKPSAEFITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQVIPCFQRDGLFCLHENGCITLRVRRSYNNIFTTSNEEPDPDPVQELT----YDLRSQCDAIRVTKTVRPFSMVCCPVNENAAALVVSDGRVMIWELK--SAVCNRNSRNSSSGVSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKNIKMYQPLLAVGTSNGSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLS-FATSTPNNMGLVRNELQLVDLPTGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDVRTCTLLREMSKNFPTITALEWSPSHNLKSLRKKQL---ATREAMARQTVVSDTELSIVESSVISLLQEAESKSELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSMGSITCIAWKGDTLVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAPGKGNQKLIAMYNDGAEVWDTKEVQMVSSLRSGRNVTFRILDVDWCTSDKVILASDDGCIRVLEMSMKSACFRMDEQELTEPVWCPYLLVPRASLALKAFLLHQPWNGQYSLDISHVDYPENEEIKNLLQEQLNSLSNDIKKLLLDPEFTLLQRCLLVSRLYGDESELHFWTVAAH 934 HSP 2 Score: 266.544 bits (680), Expect = 1.281e-72 Identity = 139/329 (42.25%), Postives = 196/329 (59.57%), Query Frame = 2
Query: 2807 IXRIYGDESDVLFWNVALHYXXXXXXXXXXXDAASVPVKKKSFDLADFELDIDLDVSDDENGEQSQQKESLEDEGTMCTELDSSYDILCDNEFYRRIQLFRVALRDSHRSSYDHTRSCAENLILLGQMDRAVQILLEGEPSDSSYYPDALRACLIATVKTTSNSQSTIKLVATNLIACGKLKEGVELLCLVDKGTDACRYLQTYGAWDLSTWIAKVRLNERDCTDVMSRYCEHLTSS-MNRKMEAILILLSFGQFVKVMELLFKLGQVDRATLLLESCIEFGLLSMNDDANRNLFENVLLDYARLQIKLKNETAVEYYCQLAGGRGKKL 3790
+ R+YGDES++ FW VA HYL +S +++ + KE+ + + LD YD+LC+N ++++ QL RV L++ RS+YDHTR C + L+LLGQ DRAVQ+LLE + YY D+L+ACL+ TV ++ SQSTIKLVATN+IA GKL EGV+LLCL+DK DACRYLQTYG W+ + W+AKVRLN +C DV+ R+ +HL S +N+K +A+L+LLS G F V E L + DRA L +E+C+++G + +D + L + DYAR L + + AG GK L
Sbjct: 916 VSRLYGDESELHFWTVAAHYLH--------------------------------SLSQEKSASTTAPKEAAPRD-KLSNPLDICYDVLCENAYFQKFQLERVNLQEVKRSTYDHTRKCTDQLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVTEDTEK-LITAIYADYARSLKNLGFKQGAVLFASKAGAAGKDL 1210 The following BLAST results are available for this feature:
BLAST of TCONS_00012847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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