TCONS_00012850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012850
Unique NameTCONS_00012850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012850 ID=TCONS_00012850|Name=TCONS_00012850|organism=Clytia hemisphaerica|type=transcript|length=1091bp
AGGAAAATGTTGGAATAATTATCGAGGTCAAGCAGAGGACAAACCATGTG
GGCTGTGTGGGTGGAAGCTCGGTATAAGAGGAAAAATACTGAAATCTGAA
AATCATATTCCCCCTATGTTCACACATTCTACGGACAAATCACCAAAGAC
ATAAATAAGCAGAGAGAATCAATACAGGAGCCATGATTATGGACGAGAAG
AACATCTTCAATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTA
TCCTCAACAAATGATGCCTGCAACAACACAACAAGACTTCACCCAAGACA
ACAATCAAATCGTCACAGAATCAATATGTTACTCTCCGGACATCATAAGG
TCTAATCAAAACCAAACTGCATCCACAGGCAGCGCCTTCTCTCACATCGA
AACGTATACAAGCAGTGCATGCAGCTTCCCAACAACTACACAAACCAACA
GCAACGACTGTAGCTCTTTCACAACCAGCCTCACAGCAATGACAACCTCG
ACAACAAACACCAACAAAGAGGTCAACGAGCAAGATATTCTTCNTAGACA
CAACAAACACACCATCATTTCACAGCGATTCTACCAATTTCTCTTTCTCA
CAAAGCGATACTTCAGACGACGACCACGAGACCAAGAAAGTCAAACGTTT
ATACAAATTCAACCCCAAACCTCTCGTTTCCAAGCCCTCCATGCGTCGCC
ATCGCTACACCAACACGCAAGCACACGAGGACCCCGAATACTTCGAACGA
CGTCGCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCAAGAAGGTA
CAAAGAATGTCTCATCGTTGAAGAGAtggaaaaattgaagaaagaaaacG
AAGAGCTCAAAGAACAGATTCAAAAACTGAAAGAAGAACAACAGAACAAT
CTTTAACAAAACGTCAATCGGGTAAACGTCTCATCAAAACAGAAGAGATG
TTTAACCATCAAACACATCCCCCTTTTTGAAAAGCCAATGTATATAATTT
TTAACTAATTTGTAggattttgtaaaaaagaaaacatttttcctgtaaat
aaacaaagatgaaaagaaGCAAACAAATACCTTGCTTTAAT
Run BLAST on NCBI

protein sequence of TCONS_00012850-protein

>TCONS_00012850-protein ID=TCONS_00012850-protein|Name=TCONS_00012850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MIMDEKNIFNGEMSMEDFVSQSYPQQMMPATTQQDFTQDNNQIVTESICY
SPDIIRSNQNQTASTGSAFSHIETYTSSACSFPTTTQTNSNDCSSFTTSL
TAMTTSTTNTNKEVNEQDILXRHNKHTIISQRFYQFLFLTKRYFRRRPRD
QESQTFIQIQPQTSRFQALHASPSLHQHASTRGPRILRTTSQKQRSFKKI
TVSKKVQRMSHR
Run BLAST on NCBI

transcript from alignment at sc0000156:504160..505765-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012850 ID=TCONS_00012850|Name=TCONS_00012850|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at sc0000156:504160..505765- (Clytia hemisphaerica)
AGGAAAATGTTGGAATAATTATCGAGGTCAAGCAGAGGACAAACCATGTG
GGCTGTGTGGGTGGAAGCTCGGTATAAGAGGAAAAATACTGAAATCTGAA
AATCATATTCCCCCTATGTTCACACATTCTACGGACAAATCACCAAAGAC
ATAAATAAGCAGAGAGAATCAATACAGGAGCCATGATTATGGGTGAGTAT
ATTTTATCTTATTTTCTTATGATTCTTTCCAATGCTTTAAATTCACCAAT
ACCTTTTTACTCACGTCTTGGATAACCTGGATAACCTGGCAACAGACATT
GCAATGGTTCAATCCACGTGGTTCCACACATGTCACGAAAATTTGAAGCA
AATCTACATTATTACACGAATATTACTAGGCAAGTATTCAACGGCCTTGA
AATTCGGATGATCTGAAATTAACACGAACTTTCTGCTTTTTCAAGGAAAC
AACGGCTGGTTTTAATTAAGAGGGATTTTATTAACAGGAAATTTTCACTT
CGTGCTAATAAAACGACTAAAAATATTTGTGTAATAAAGAATGTCATTAA
CTAAGGCGTACAACAAGAACTGACACCTTCCTCTAACCAAAAGTCTCATC
ATAAACATACAATCATAACGACCATAAGACAAAGAAACCAATAAAGATTT
GATTCCTATCCAGATAACATCTAGAACTAACTTTCTTCATTTCTCTATTT
CATTCAGACGAGAAGAACATCTTCAATGGTGAGATGAGTATGGAAGACTT
CGTTTCACAATCCTATCCTCAACAAATGATGCCTGCAACAACACAACAAG
ACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTACTCT
CCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAGCGC
CTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAACAA
CTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTCACA
GCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCAAGA
TATTCTTCNTAGACACAACAAACACACCATCATTTCACAGCGATTCTACC
AATTTCTCTTTCTCACAAAGCGATACTTCAGACGACGACCACGAGACCAA
GAAAGTCAAACGTTTATACAAATTCAACCCCAAACCTCTCGTTTCCAAGC
CCTCCATGCGTCGCCATCGCTACACCAACACGCAAGCACACGAGGACCCC
GAATACTTCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAGATCACG
GTTAGCAAGAAGGTACAAAGAATGTCTCATCGTTGAAGAGATGGAAAAAT
TGAAGAAAGAAAACGAAGAGCTCAAAGAACAGATTCAAAAACTGAAAGAA
GAACAACAGAACAATCTTTAACAAAACGTCAATCGGGTAAACGTCTCATC
AAAACAGAAGAGATGTTTAACCATCAAACACATCCCCCTTTTTGAAAAGC
CAATGTATATAATTTTTAACTAATTTGTAGGATTTTGTAAAAAAGAAAAC
ATTTTTCCTGTAAATAAACAAAGATGAAAAGAAGCAAACAAATACCTTGC
TTTAAT

Coding sequence (CDS) from alignment at sc0000156:504160..505765-

>TCONS_00012850 ID=TCONS_00012850|Name=TCONS_00012850|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000156:504160..505765- (Clytia hemisphaerica)
ACGAGAAGAACATCTTCAATGGTGAGATGAGTATGGAAGACTTCGTTTCA
CAATCCTATCCTCAACAAATGATGCCTGCAACAACACAACAAGACTTCAC
CCAAGACAACAATCAAATCGTCACAGAATCAATATGTTACTCTCCGGACA
TCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAGCGCCTTCTCT
CACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAACAACTACACA
AACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTCACAGCAATGA
CAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCAAGATATTCTT
CNTAGACACAACAAACACACCATCATTTCACAGCGATTCTACCAATTTCT
CTTTCTCACAAAGCGATACTTCAGACGACGACCACGAGACCAAGAAAGTC
AAACGTTTATACAAATTCAACCCCAAACCTCTCGTTTCCAAGCCCTCCAT
GCGTCGCCATCGCTACACCAACACGCAAGCACACGAGGACCCCGAATACT
TCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCA
AGAAGGTACAAAGAATGTCTCATCGTTGAATGATTATGGACGAGAAGAAC
ATCTTCAATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCC
TCAACAAATGATGCCTGCAACAACACAACAAGACTTCACCCAAGACAACA
ATCAAATCGTCACAGAATCAATATGTTACTCTCCGGACATCATAAGGTCT
AATCAAAACCAAACTGCATCCACAGGCAGCGCCTTCTCTCACATCGAAAC
GTATACAAGCAGTGCATGCAGCTTCCCAACAACTACACAAACCAACAGCA
ACGACTGTAGCTCTTTCACAACCAGCCTCACAGCAATGACAACCTCGACA
ACAAACACCAACAAAGAGGTCAACGAGCAAGATATTCTTCNTAGACACAA
CAAACACACCATCATTTCACAGCGATTCTACCAATTTCTCTTTCTCACAA
AGCGATACTTCAGACGACGACCACGAGACCAAGAAAGTCAAACGTTTATA
CAAATTCAACCCCAAACCTCTCGTTTCCAAGCCCTCCATGCGTCGCCATC
GCTACACCAACACGCAAGCACACGAGGACCCCGAATACTTCGAACGACGT
CGCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCAAGAAGGTACAA
AGAATGTCTCATCGTTGAATGATTATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007202XLOC_007202Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012850-proteinTCONS_00012850-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012850-exon-sc0000156-1575043694:505574..505765TCONS_00012850-exon-sc0000156-1575043694:505574..505765Clytia hemisphaericaexon
TCONS_00012850-exon-sc0000156-1575043694:504160..505058TCONS_00012850-exon-sc0000156-1575043694:504160..505058Clytia hemisphaericaexon
TCONS_00012850-exon-sc0000156-1510915933:505574..505765TCONS_00012850-exon-sc0000156-1510915933:505574..505765Clytia hemisphaericaexon
TCONS_00012850-exon-sc0000156-1510915933:504160..505058TCONS_00012850-exon-sc0000156-1510915933:504160..505058Clytia hemisphaericaexon
TCONS_00012850-exon-sc0000156-1491911889:505574..505765TCONS_00012850-exon-sc0000156-1491911889:505574..505765Clytia hemisphaericaexon
TCONS_00012850-exon-sc0000156-1491911889:504160..505058TCONS_00012850-exon-sc0000156-1491911889:504160..505058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:504160..505765 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0517168	0.113857	0.173924	0.336101	0.139401	0.120353	0	0.0968291	0.120682	0.175813	0.0407525	1.08808	2.67691	1.71583	0.201393	0.736364	0.150981	2.66669	0.115918	0.800006	0.038891	0.0696294	0	0.04193	0	0.154173	0.42908	0.477862	0.0770046	0.136461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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