TCONS_00012868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012868
Unique NameTCONS_00012868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012868 ID=TCONS_00012868|Name=TCONS_00012868|organism=Clytia hemisphaerica|type=transcript|length=679bp
ttaggaTGCACCACCGCCTGGCTCATACGAAGTCGCAAAATCGTTTGACA
AAACTCAAGGGAAAGTGTTGTACGGGGATACACACAAGATCACTGAAAGT
AAAAAGAAGATCAATGGAGGTTTCTTGTCGTCAACCAAACGTTTCTCACA
ACCAAGGGATGTCAGACATAAGAAAGCTGATCTTGAACTACCTGGTCCTG
GTCATTATGATATCAAAGAGCCAGATGTCCCTGGTGGTAACTTGGTCACC
AAAGAATCACGTTTCAAACAACATGATAACAATGTCCCTGGACCAGGCTC
TTATCAGTTGAGTCCACTTCTACAACATTCAGTATTGAAGAGTACTTTCA
ACGCAACACTGACCAATCCTGTTGCAAAAGCGCTTGAAGAATTAAACGAA
CAAAAGATGAATTCCATGCCGCTTTCTGTTTTCCTTTGAAGAGAAGAATC
TCATCACAAATCatatcttttttaatttcaatattttcaagttttgtaaa
ttttatgtAGTAAAATAGTAATGAATTgtaaatcttttttgatttgtata
cttttttaatttcaaccaTATATCTCCGAGTGATTTTGATTTGTAACCAA
AAAACCGACAGTATTTCCTTTTTTTGTATGTATATTAGTGAAGGATTaat
atatttgatttttgtATAAAGAAACCAAC
Run BLAST on NCBI

transcript from alignment at sc0000157:55759..67494+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012868 ID=TCONS_00012868|Name=TCONS_00012868|organism=Clytia hemisphaerica|type=transcript|length=11736bp|location=Sequence derived from alignment at sc0000157:55759..67494+ (Clytia hemisphaerica)
ttaggaTGCACCACCGCCTGGCTCATACGAAGTCGCAAAATCGTTTGACA
AAACTCAAGGTTCGAAATGTTTATATTGAAAATATGGTTGTGGTGGTTGC
GATCCTCCTGGACATAGGGCCCGCATAAAAATAATGATTCTTTTGTTCTC
CAATAAAAGATCCTTAAGCCTGTGCTTGGTTaggaaaatatgtaaaattg
aCTTGCTTCACGTTAACAAGGAAGCCTGAACAAGTGACGTGATGGGAAAG
AAATTCTGGGGTTgccaagcaaaaatttgacgctctttcaaagatatttt
gtttgtagatattttattttttcgccaTTTTTGTAATAAATGAGCGCCTT
TTCACGTTTAGATGAGCACTGCCTAAACTTGGTTTACGAAATTATTACGA
TTTTCCTTATTGGTACCCCTCACCTTTTTGTTGCCTCCTTGAAATAGCTC
TGTTGGGGGGGGGGTATCCTCTGACACCACGCAACTGGGAGAACTGCAGA
CCGATCCAAGTTTCTGCAACTTTGCTAATTCAATAACTTACTTTTATAGG
GAAAGTGTTGTACGGGGATACACACAAGATCACTGAAAGTAAAAAGAAGA
TCAATGGAGGTTTCTTGTCGTCAACCAAACGTTTCTCACAACCAAGGGAT
GTCAGACATAAGAAAGCTGATCTTGAACTACCTGGTAAGGCAGAGTGCAA
AGTTCACTATTTCTATTTGAAGTTCATTTTCGAATAATCTGGGTACTTTC
AATATATCAATTTAAGTGAATCCAAGATTGgccttttccagaaatagtcc
tcAACGGGgggttgaggatatcggatatccagggggttaacgattttttt
tcaaaagtggatatccagtgggttaaatatctacaagggagcggatatcc
agggggtgaagtgtcttttcaagtaaaaaatacgatatccagggtaAGCA
TCTTTACAAGAGAGGATATCTAGGGAGTTGAGCATATTTCTAAGAGTGGA
TATTCAGGTAGTCTacactaataaagtaggatatccagggggttcgatac
ttcgaaaaatcaatatcctcaaaaGTGGGGGTAataaatttttctggaaa
agcccattgccCGGCATGGAATAAGACGGAAAACCAATTTTTGATATGTC
TAATAATAACCTTAAAATCTACCGAAACAACACTGTGGTTAAATCATTGA
CATTCGGGGCTCGCGCCATACTTTTAATGGCTACAATTCTGGCAAAATCA
GTCTTGAAATTGGGCCATTTTAAGGCACATACAAAATTGAAACCATGGCT
GCGCCTCCTTTAGTCGCTATATTTTTTNAAACAACACTGTGGTTAAATCA
TTGACATTCGGGGCTCGCGCCATACTTTTAATGGCTACAATTCTGGCAAA
ATCAGTCTTGAAATTGGGCCATTTTAAGGCACATACAAAATTGAAACCAT
GGCTGCGCCTCCTTTATTCGCTATATTTTTTGCCTATCCGCTTACAAAAT
CATGCCGTGGCATGAATTTTTAGTTATTCTTTTGTTGAATGGGAAATCGT
CCTctgaaatctttgttttctctaACTCCATCAAGGTCCTGGTCATTATG
ATATCAAAGAGCCAGATGTCCCTGGTGGTAACTTGGTCACCAAAGAATCA
CGTTTCAAACAACATGATAACAATGTCCCTGGACCAGGCTCTTATCAGGT
AAATACatatgtttttttgatttttgtttttcttaggTCCCAAATATAAC
GGAGAGTTAAGAAAGTCCTAAATTTCTGTCTAATCGAGGATCCTTTCTTG
CCTATTAGTCAATTTAATGTTGTTGGATAAAaatcaatgataaaatgttt
tccaaacatGTAATACTTTAGGTCCTTTAGCTTTCTGTTAATCAAAAATT
ATCTAAATTATCTAAAACGATAATAGACGTTTGAGCATCTTTGCAAATAT
TCGAGGGAGACTGTCTTTGAAAGGTTCAGGGGTTagctttttctctttct
tagaTTTCTTAGATTCTTATAATTGGTAATTTTTGCTCCAAAATTCTTCT
ATCATTCCTTGTGAAACCTTCAATAATGAACATGGGTTGGAAATGCCTTA
GTCTAAATAAtatacagctccaggctttttgGCCTTACTTAAAGTTTACG
CTCGAAACGTAAGAAGATATGACATAGCTTAGAAATGCCTGGGCCTAAAG
AGGATTATTCATGTGACTACATGTGACTACAAAACGCTCAATCAAGAGAA
CCGTTTATTCTTTTAAGATACTCTCTATCAACTTATATCCACTGAACTTT
GTAAATACCTGAAGTTTCATGACCAATTAAAATCATGCTATCATGTATTG
TTATCACCTAATGTTAAATGGTCCCATAcataatttgttcttttaattgC
GTCATGACTTATTATTATAGATTAAGGTAATTTAGCATACATTACTTACT
GCATCTCAATaagtaggcttctgctcatcctcttaCGAAAacgtttctta
taggaagtacAGTATATCTATAGAAGTCTGCGAATAAGACTTCTCAATAA
GTTTTAACTACAAGGTTAATAAGCTTACCATTTCCTCTGCATCTTTGCTT
GACCTTTCATTcgagtttattttttttatcgtTTTATCTATTGCGTTTGG
TCTGCCTTCACCTGCTTTTATAAACCCGCAAcaaagccattgcagtgtta
aaactTTGCCTAACGCCAAAGCCAAACGGCGACAATTCttcaaccctagt
accccccccctccgTATTACACCGCTATCATATTAAAGGGCTGCCATTAC
AATAGACTCTCCAACCTTATCGGGCTCTAAgggttcatgaaaatttctca
TAGTGGCTTAAAAATTCCCACTGAGAGATGGGACAGGAGCTTTGATGGTT
TATACACCCCATGATATTTATTGCTTAATAAATTTTCACATAGAAAAATC
TATGATATAAGGATAAACGAATGAAAATCTGGGATAATACTCCATCCAAT
ATCaaagttatgaaaaaaagagaaaattagtAATCGATATATCTTAGTAC
GCGATATCTATTaggatcaattttttttttagctattGATTAAAATAAAC
CTCGGTCTAAATCAAAGCTTATCTCCTCACGATGAAAAATTTgcactttt
ttttttagatttcgtATGTTATTAGTTTTAATGGGCTCCATTATCACCCC
CTTCCCTTTTTCACAGCCCCTCCTTTATACCTCCCTTGTTGAAAGAAACT
TCCTTGATATACATgctgttttatataagaacaaaagctTCCtggccaaa
aaaaataaaaatattctaagaCCATTTTAAGTCTTTGTTAGCTCTAAAAC
GTGTAATTTTCTATAtatcatttttaggcttcagactcgcaaaattaaga
acacccgaagattctcaatgttcttataaaaaactagtAATTTTTCCTCC
TTTACTAGTTCTTCTCATAATTTATTTAGTAGGTTTTCTTCAAAACATAA
TCCATCATTCCCTTGTTTTCAGTACTTCCTAGTACGacctttttattaga
acacattaattttgaaagaggtttcagctattcttaatttttcaaaatat
tcaagctTTATAATGCTCTTTACGTATTGTCTTAATGCATTTAAGCTATA
AAAAAGCTATAAAAGCtataaaagttaaaataaattTCTGGTAACTTAGT
CTAAGGTTCAGAATGTTCCtgatttgttcttaggtttaggccaaatttca
gccttgtgttcttataacaaaGAGCCTTTGCCTTCGCATGAGACTGTCCC
TAAATTTTCTAGCTCCAAAATTCAGAAGGATTAGGACATATTTTCTAGGC
CTCTTAACACAATTCCTTTCCTCACAACATCAGTTTCGGTCATCaagaaa
atgattgaaaacCGATTAAGATGAATGAGAGAAAGGGGTTGGGTCACACA
ATCTTCTTTTCTGAAGAGGAATACGAATTTCTTTTTGATCCTTATTACGA
GAATCTTATATCGTCAAaagtttaaccctattcgtactagggggacTGTT
TCTGCTCAGGGGTGAAACTAatgttaatagctcctgaaataatggAACTT
TTGGCATGAAGTTTTccgtaaattcctaacttttccaaagttaaggggtg
gttttgaaccgcccctaaaagttAAGTATGAATAGTATGAAGGCGACCCT
aaagctcctctttcgatagctatctacccaggATTCCTTGATCTTTTTCA
TTACAGTAGTTNGAAAGtgtaaccctattcgtactagggggacTGTTTCT
GCTCAGGGGGGAAACTAatgttaatagctcctgaaataatggAACTTTTG
GCATGaagttttctgtaaattcctaacttttcaaaagttaaggggtggtt
ttgaaccgcccctaaaagcttAGTATGAATAGTATGAAGGTGACCCTaaa
gctcctctttcgatagctatctacccaggATTCCTTGATCTTTTTCATTA
CAGTAGTTGAACAGTCTTAAtaaagcctattctgagctccacacgGGGTT
TCGCTGGTTTcaaatggtcgtaaacctccaTGGATCATACGATAATGTTT
GAATTGAAGGCTGATCACCATGTAACATACAAAATAACACCTTTCACAGC
AATTAGCATTCAACTGTAAATTGGAATGATAGCTGTGTATTCTTGCCTGT
AACAGATCAAGTTTCAACAATCACAGCATGCAGCAGCGTAAATCAGTCAT
GATTTTTCTTTAGGTCGAatgtttgcaaattttttttccttttttcggCT
AATTCACCACTTTCACGGGTGTTCAAATGGTAAATCAATTGCAGTGATCT
TACATATTCTTTACAGTCCATAAAGAGATCTCAAGAAACGTGCCTGATGT
AATCACTGATTAGATCAGTATTGTCTGGGGgagttgaaaattgaatagac
cttttttcaaagaggacatcctgttgaataattatgtagtccaacCATAT
GGTAgggccatgcataattactgtatcatgcatattgtaatgaTTATGCA
CGGTTTTATCATtctttttctgctggactacataattattcaacaggatg
tcctctttgaaaaaaggtctatttactGAATGTATTGAAATCAAATAACG
CCAATATctcgaaaaatgaatcaacaATTTAAAACTTCTTCCCTGTTTGC
AAATCCAGGAATTCCTGCGAcaaattgagtttgaaaatgCTAAATCTATA
GACCTATTGTTAATTTGAGGGTATCATTTTAGTTACGCGGTCTTCTCGAG
GTGCCCCGCAAGCTTAGCACCAATTTAATGCGTTATCTCTTAAATCAACA
CATACAGTTTACCATCTTGTATAACTAGTATCACGACAGCCATATCATTC
ATCTAAAGTAAACATGTTTTTAATTGACACAACTCAAATCTTGACAGTAA
GTTTTATAAGAGGATTATTCTACTAtcactttttaagaaaatcaaacaaa
agcaTAAAACTGTGATCCTCTTGCCTTATATTTTTTCGATCCACTTAGAA
AATGGATTTATTATTCTTACGCTAAATTCACTCTGTGTGTGTTTACTTAT
CATAAAAGTAGATTAGACAACGCTTCGGGTTTCCGAATATTCTGTAGGTT
TTTACAGCTTTGGGTTTTTTGAAGATGCCTAACTACACCAGCGTGTACTA
GACCTGAAAACAATTgtattttttggcaaaattattggCATCGAGGGATA
AATAGACTTGCTGCAGagttcagaaattttcaaaatttactgcTTTTAAA
TTCTCTGTCACTCATTATGAACTTTTAGTGCTTTAAAAGAAACACCAACC
AGAAGTTTGAAAACCTTAATTTTTATACTAACAAtgagctcttccagaaa
aatgaggggggggggtggaggatatagtgtccggaggtagtgaaaaatct
acaaaatttgccctatccgggggtaaacttgctctatCTGGGGGGTCAGA
CCTGCTCggggggtcaaaattcacaatgtccggggggtaaatttctaaAA
GATAAATATAACTATCCTCCACCctccatattcaattttttttttgaaaa
gcccAATCTTGACCATggtaaaaaataaggaaaatttcagcaaatcaaAA
CTGCAAGTTCTTATgttattttgaccagttttgaCCAGACAAACCCTTCG
CCTTATTTCTAATcatatacacctttttttataagaacatccaaaatttt
tgatgcCTTCGGATgttgttaactttttgagttttaaaccgtaaagttct
taacatgttcttaacttgttcttaatattgtggccatcgaagccttatgt
tcttatatagtttgttcttatataaaaaaacgtggtGTAACAGATCATTC
ATTCTACCCTTTAGTGTGAATACTTGCCATACATGCAGTTATCAGAACCT
GCTCGACTGAGATTACATTATTTCTATTTCCATTTTAGTTGAGTCCACTT
CTACAACATTCAGTATTGAAGAGTACTTTCAACGCAACACTGACCAATCC
TGTTGCAAAAGCGCTTGAAGAATTAAACGAACAAAAGATGAATTCCATGC
CGCTTTCTGTTTTCCTTTGAAGAGAAGAATCTCATCACAAATCatatctt
ttttaatttcaatattttcaagttttgtaaattttatgtANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATGAATAGTATG
AAGGCGACCCTaaagctcctctttcgatagctatctacccaggATTCCTT
GATCTTTTTCATTACAGTAGTTGAACAGTCTTAAtaaagcctattctgag
ctccacacgGGGTTTCGCTGGTTTcaaatggtcgtaaacctccaTGGATC
ATACGATAATGTTTGAATTGAAGGCTGATCACCATGTAACATACAAAATA
ACACCTTTCACAGCAATTAGCATTCAACTGTAAATTGGAATGATAGCTGT
GTATTCTTGCCTGTAACAGATCAAGTTTCAACAATCACAGCATGCAGCAG
CGTAAATCAGTCATGATTTTTCTTTAGGTCGAatgtttgcaaattttttt
tccttttttcggCTAATTCACCACTTTCACGGGTGTTCAAATGGTAAATC
AATTGCAGTGATCTTACATATTCTTTACAGTCCATAAAGAGATCTCAAGA
AACGTGCCTGATGTAATCACTGATTAGATCAGTATTGTCTGGGGgagttg
aaaattgaatagaccttttttcaaagaggacatcctgttgaataattatg
tagtccaacCATATGGTAgggccatgcataattactgtatcatgcatatt
gtaatgaTTATGCACGGTTTTATCATtctttttctgctggactacataat
tattcaacaggatgtcctctttgaaaaaaggtctatttactGAATGTATT
GAAATCAAATAACGCCAATATctcgaaaaatgaatcaacaATTTAAAACT
TCTTCCCTGTTTGCAAATCCAGGAATTCCTGCGAcaaattgagtttgaaa
atgCTAAATCTATAGACCTATTGTTAATTTGAGGGTATCATTTTAGTTAC
GCGGTCTTCTCGAGGTGCCCCGCAAGCTTAGCACCAATTTAATGCGTTAT
CTCTTAAATCAACACATACAGTTTACCATCTTGTATAACTAGTATCACGA
CAGCCATATCATTCATCTAAAGTAAACATGTTTTTAATTGACACAACTCA
AATCTTGACAGTAAGTTTTATAAGAGGATTATTCTACTAtcactttttaa
gaaaatcaaacaaaagcaTAAAACTGTGATCCTCTTGCCTTATATTTTTT
CGATCCACTTAGAAAATGGATTTATTATTCTTACGCTAAATTCACTCTGT
GTGTGTTTACTTATCATAAAAGTAGATTAGACAACGCTTCGGGTTTCCGA
ATATTCTGTAGGTTTTTACAGCTTTGGGTTTTTTGAAGATGCCTAACTAC
ACCAGCGTGTACTAGACCTGAAAACAATTgtattttttggcaaaattatt
ggCATCGAGGGATAAATAGACTTGCTGCAGagttcagaaattttcaaaat
ttactgcTTTTAAATTCTCTGTCACTCATTATGAACTTTTAGTGCTTTAA
AAGAAACACCAACCAGAAGTTTGAAAACCTTAATTTTTATACTAACAAtg
agctcttccagaaaaatgaggggggggggggggggatatagtgtccggag
gtagtgaaaaatatacaaaatttgCCCTATCCGGGGGTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATATAACTATCCTCCACCc
tccatattcaattttttttttgaaaagcccAATCTTGACCATggtaaaaa
ataaggaaaatttcagcaaatcaaAACTGCAAGTTCTTATgttattttga
ccagttttgaCCAGACAAACCCTTCGCCTTATTTCTAATcatatacacct
ttttttataagaacatccaaaatttttgatgcCTTCGGATgttgttaact
ttttgagttttaaaccgtaaagttcttaacatgttcttaacttgttctta
atattgtggccatcgaagccttatgttcttatatagtttgttcttatata
aaaaaacgtggtGTAACAGATCATTCATTCTACCCTTTAGTGTGAATACT
TGCCATACATGCAGTTATCAGAACCTGCTCGACTGAGATTACATTATTTC
TATTTCCATTTTAGTTGAGTCCACTTCTACAACATTCAGTATTGAAGAGT
ACTTTCAACGCAACACTGACCAATCCTGTTGCAAAAGCGCTTGAAGAATT
AAACGAACAAAAGATGAATTCCATGCCGCTTTCTGTTTTCCTTTGAAGAG
AAGAATCTCATCACAAATCatatcttttttaatttcaatattttcaagtt
ttgtaaattttatgtAGTAAAATAGTAATGAATTgtaaatcttttttgat
ttgtatacttttttaatttcaaccaTATATCTCCGAGTGATTTTGATTTG
TAACCAAAAAACCGACAGTATTTCCTTTTTTTGTATGTATATTAGTGAAG
GATTaatatatttgatttttgtATAAAGAAACCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007219XLOC_007219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012868-exon-sc0000157-1491911889:55759..55817TCONS_00012868-exon-sc0000157-1491911889:55759..55817Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1510915933:55759..55817TCONS_00012868-exon-sc0000157-1510915933:55759..55817Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1575043694:55759..55817TCONS_00012868-exon-sc0000157-1575043694:55759..55817Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1491911889:56308..56442TCONS_00012868-exon-sc0000157-1491911889:56308..56442Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1510915933:56308..56442TCONS_00012868-exon-sc0000157-1510915933:56308..56442Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1575043694:56308..56442TCONS_00012868-exon-sc0000157-1575043694:56308..56442Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1491911889:57344..57456TCONS_00012868-exon-sc0000157-1491911889:57344..57456Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1510915933:57344..57456TCONS_00012868-exon-sc0000157-1510915933:57344..57456Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1575043694:57344..57456TCONS_00012868-exon-sc0000157-1575043694:57344..57456Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1491911889:67123..67494TCONS_00012868-exon-sc0000157-1491911889:67123..67494Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1510915933:67123..67494TCONS_00012868-exon-sc0000157-1510915933:67123..67494Clytia hemisphaericaexon
TCONS_00012868-exon-sc0000157-1575043694:67123..67494TCONS_00012868-exon-sc0000157-1575043694:67123..67494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:55759..67494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.644	12.3664	5.04258	4.0136	32.5236	24.5342	16.7407	16.8081	11.3861	14.2217	11.3567	9.37578	1.05425	0.860239	1.13586	1.65593	2.60663	2.14899	2.00604	2.14116	1.97053	2.3495	4.7602	4.48509	62.7689	37.901	5.74449	7.06961	3.97964	3.0303
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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