TCONS_00012891 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012891
Unique Name	TCONS_00012891
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2991

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000157:18323..26485-
coding sequence from alignment at sc0000157:18323..26485-

transcript sequence

>TCONS_00012891 ID=TCONS_00012891|Name=TCONS_00012891|organism=Clytia hemisphaerica|type=transcript|length=2991bp
GAGTAACATACTTAAAAAAGACAAGGAATAAAACTAGATTCAAAACTCAG
CGGAAAATGAGTACATCCAATAAATCTATCCATGAATGGACAGTATCAGA
TGTTGCTGAATGGCTGGATGAGAATAATTTATCCAAACATAAAGCATTAT
TATGTGATGAACACCAGATTGATGGCAGTGCCTTGATATCGTTGAACGAA
AGTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCTAGGTGATATCAA
GCGTATTACCAGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGGCTA
TGTACAATGACTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGTAGT
GGCCGCAAGAAGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGATGA
AGATAACGAGTCTTTATTTACAACTGATAATCCTGACGGAATCGATCCGC
GCCGTGTGAACCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCAGAA
TACGTTCGCACGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTTGCT
TGCCGCGTTCGTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCAGCA
ACTATCCACCACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATACCA
AGTGCCTTTTATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTTTTG
GTTTTTGATTATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAAGGA
GTTGTGCGATTTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATGTAT
GTGACTTCGATGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTACGaa
atatgCGACATTCTACAATCGTGCGTTTAGAGCATTTGAGATTGTTTCTG
GGGGAGGTATGGCTATGAATGGTGTTCGAACGTGCGGTGATTATATGTTC
AGTGGTCACACTGCAACACTTACCTTGTTAAATTTCTTCGTAACTGAATA
TACACCGAGAAAATGGTATGTTCTCCATACCTTCTGTTGGTTATTAAACG
CCTTTGGTGTCTTCTTCATCCTAGCCGCACACGAACATTATTCCATAGAT
GTCTTGATTGCCTTCTACATTTCGTCTCGATTGTTCTTATATTATCACAC
GTTAGCCAGTACCGTACAATTTCGTACAAGTGATCAGAAGAGAAGACGTA
TTTGGTTTCCTATGTTTTGGTTTTTCGAGTACGGATGCAGGCTAGTTATT
CCAAATGAATTCGAATGGCCGTTCACTTATCGGAAACTACAAGACGTTTT
CCCGTCTTTGAGAAACGACAGTAGTAGTGGCGCTGGTACGCCGGTAAAAA
GTAGTGGTGGCGCTGGTACGCCGGCTAAAAGTGGTAGCACGCCgggaaaa
aagaagaagagatGAAAATTATAAGGTGTCTTCCCGATTATAGGAAAATG
CTGTCTTTTCAAACGCTACAGAtaataaaaatctgcaaaaatatgACCTT
GGACTTGGTTATATTGTCAAAAAATCATTATGATTAATGATAACTAGGAT
ATTTGCGataacagatttttttttgttttagatgTCAATGGTTTAaagtt
ttaatctttttttttaactacCCGGACTCTGGCCATTTCGTCTGGTCATT
TTCGCTAGTGGTGTTTGCCCGAATTGTGAACTTGATAGATATTGGGATAA
TGAAAACCTCTCTATTTTGACTGAAATACTATATCTTCCACTGTGGATAG
TACTGGCTAATATTcttataatattttgaaatgggGTAATTTAGAAATGG
TCTTTAatccctatgttgaggaggtatgCCTTCCaacttggaaaataaaa
aaatcaagggATCGACAATCCAGGGTGGTCCCAAAAATGAAAGGGGtcct
gaaaaatagaaaaaaagtccAGGAGGTTACCTTTTCCAAAAAAGACTTCC
TCAAACAAAGGTGGTAAAAAATTTTCTGCAATAACCCAATGTGACAGAAG
CTTGAATTTTCTTTGTAGGTCGCCcgtaaatttaatttttatgataTAAT
ATATAGTATTTCTTgcatttttatctaatttataTGGCATTTTTTattaa
caatagattttgagTACGTAGGACATTTTGAGCATATTTTAGTAGACAGA
TATTATATTctttgaactttttaaaaaatctttgatatttttgtatatta
CTCGACGCTGCTTACTTAGTTTATACCTCCAGCGCTGACATATCCTTTTA
ATCTTTGGCTTAGCTTTTTGATTGTTcgaaattttcagcctaaaatatcT
TAAAAGATGGTTAATAATTAGTATTTTCTTACATGTGGGGCTCCTAGCTG
TTCCagatctttattttttatttgtttgccTTATCCGCATCAAAAGTGAC
AATTCAGTCCTGTAATCTAAACTCTTTTCTGCCTTATTTTACCCCCTCAC
ACCATTTTTGATTTTACAGTTTTTGAACTTTCTTTCACTCGTCTTGCTCA
GTGGATGGGATGTTTCATCAAGAAAGCTTTTTTAAAGCTACCATCCTCTG
CTCACTGCATTCCCTTAAAAGATTTTACGGAACTTTGATAATACAATTGA
TTCTCCAGGCAATATTTtcaactcgaacacgcacggaaAACGCAAATATT
TTCGAGTTAAGGTGGTTTTAAGTTATGGAGAAATGTTTATGAGGCATTGG
GACCACAAAActggttcgagttaaggagacattcgagttataagATTCCA
GTTAAAGAGACTCTGAAGAAGATGTATATATCCTTCTTTTTAAAGCCAtt
tattaaagttttttttttgtatttttactaTAGATTAGGTATTATTTTAT
AATATTGTACAATACACATAATTGTGACCGTGAAATTTGTCACGTCAATT
ATCGAAAGATAAAGACAAATTTACCAACTTCTAATTTAGCAATATTCagt
gcatttaaaaaaaaaacattttagcaTTGAGAATAAATTGG

Run BLAST on NCBI

protein sequence of TCONS_00012891-protein

>TCONS_00012891-protein ID=TCONS_00012891-protein|Name=TCONS_00012891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
VTYLKKTRNKTRFKTQRKMSTSNKSIHEWTVSDVAEWLDENNLSKHKALL
CDEHQIDGSALISLNESDLRKPPVEMTVLGDIKRITSAVDRLRAFNNAAM
YNDFADGFSPKPGGGSGRKKRRKQRIMSFSDDEDNESLFTTDNPDGIDPR
RVNPLEEEIKNALVSEYVRTAISAVYAFSVFLLAAFVLVVVHDRLPDTSN
YPPLPDVVLETIPVIPSAFYWCEICGGILMSFWFLIIIFHKHRLVVFRRS
CAISGTIFLLRCFTMYVTSMSVPGKHLQCSPTKYATFYNRAFRAFEIVSG
GGMAMNGVRTCGDYMFSGHTATLTLLNFFVTEYTPRKWYVLHTFCWLLNA
FGVFFILAAHEHYSIDVLIAFYISSRLFLYYHTLASTVQFRTSDQKRRRI
WFPMFWFFEYGCRLVIPNEFEWPFTYRKLQDVFPSLRNDSSSGAGTPVKS
SGGAGTPAKSGSTPGKKKKR

Run BLAST on NCBI

transcript from alignment at sc0000157:18323..26485-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012891 ID=TCONS_00012891|Name=TCONS_00012891|organism=Clytia hemisphaerica|type=transcript|length=8163bp|location=Sequence derived from alignment at sc0000157:18323..26485- (Clytia hemisphaerica)
GAGTAACATACTTAAAAAAGACAAGGAATAAAACTAGATTCAAAACTCAG
CGGAAAATGAGTACATCCAATAAATCTATCCATGAATGGACAGTATCAGA
TGTTGCTGAATGGCTGGATGAGAATAATTTATCCAAACATAAAGCATTAT
TATGTGATGAACACCAGATTGATGGCAGTGCCTTGATATCGTTGAACGAA
AGTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCTAGGTATTCTTCA
CTTTTAGCGATTTTATTTTATTTTTGAATTTGTTTATAATTGTTGAAAAA
CAATCGAAATTTCATTTTTGGTAAGTAAGTAAGTAAGTAATAGTTTATTT
CATGTTGACGCAAAGGTAGCAACAAAGGCTAATAAAAGTCAACGCTACTT
TACAATTAAAAAAGACTAATGTTTTGTTGGCAGCTCATCGTCGCTGCTAC
TGAGGCTAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATGAAAAGTAAATAACA
CTCATGATTGATCACGAAACATAAAGGCCTATCTACACTAGTCAATTATA
GATTGTTTTCTTCCTTTGTCGTTCACCCCTGGCTCAGTAGTAAAATTTCG
GTACATCACGAAAGACTTCTTTGAACGTTTTAGGGAGTAGAAATCTCGTG
GCAATCATTGCAAAGTGGAGTGAAGATCGAATTATCAATATTTTAGTTTT
CAGTAAATTTCTTAGGCCCCTTCTGAGAGATTTTTCAAGTTACAAGTCTC
CTGTTTTTCCGTTGGAAAAATATGTGGATGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTTCTATTCTGTAACGCGGAAACCATATTTCTAGACAT
TTCTAGACTATTCTGTTATGCAGAAACCTTTTTTCTGAACATAATCTAAA
CATATTCTGTTATTCAAACACGATTTTTTGAACATTTTCTAGCCTATTCA
GATCATGTCTAGACTATTTTTCTTACATCGAAACCATCTCTTTTGGCTTC
TTCTATGCTATCCTGTAGATACCGTTATTGTGCGTTATTCCAGGTACATC
TATGATGCGTAAGCCATTATTACAAGTATCTATGCTATTCTGTTACGCAG
TAACCACTATTCCAGGTTATTCTGTTATGCGAAACCACTATTCCAGGTTA
TTCTGTTATAGAGAAACCACCATTCCAGGTTATTCTGTTATGCGGAAACC
ATCATTTCATATTATTGTTATACGGAAACCACTATTCCAGGTTATTCTGT
TATAGGGAAACCACCATTCCAGATTATTCTGTTATGCGGAAACCATGATT
CCAGATTATTCTGTTATGCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ATTCGAATTAGAGAAAGAGTGAGATCGGTATAGAGAATCATTCGAATTAG
AGAGAGCGATCAATAAAGAAAATCATTCGAATTAGAGAGAGAGAGAGAGT
GATCGTTATTGTGATCTCAGGTTGGAAAATCTTAGCACTGAAAAAGTTAG
AGAAAAGCCGTTTTAACCAATATTTCCTCTAACAGGTGGAAAACATGAAA
CAAAAGTGGCGAGTGTGAAAAGAGCTTAAACCAACAATGTTTAAAGAAAC
TGAGAGAGAAAAAAGAAAAAGTATTAGACGATCATGTTTATTTAACGCAT
CAATCATCAATAGCTCTATTTATTTGATTTGATCACGCTATGAATATTAT
AGTGGTTTCCACATTCCAAGACGTTTCCGCATAGCGATATTAACAGAGTC
CATGAATTATGATGTTTTTTCTTTTTGATTCGATGTCTCGTTTTTCTCTC
CTCTCCTCTTCTTTTTGTTCCGCAACAACAGATTTAAGATTTTCCTTGTG
TGCTTTGGTTATATCAGCGTAGGTTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTGTTGATGACTTCTCGGTTTTTGGTCAGTTGT
TTTTTGAGTTTTTTGATTTCGTCGTCTTTTTTAGCAATCTGCTCTTGCAT
CATATGGTACTTGTTTTCTCCGATTTTACTTCTTGAGGATCTCGTTATTC
GCACACAATTGTGACATACATATTGATTATTGTACGTGTTAGCGAATATT
TGCAGTTGGTAAAGTGGCAATTGTGTGCATTCGTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGGTCTTGGGTGTTTTTATCGCGATTTTT
GTTCATATTTAGCGAATTTCGATGCTTCTTTGAGTTTCCACCATTTTTTT
GAAAGCGATGCAGAACACGTCTGGTGGTAAGAAAAATATCCTCAATTCTT
CTATTGATATGGTATTATATCCTATATGAGACTGTTTGTATGAAAAAAAT
TTCTGGTTTTACTAGGTGATTTTATCTAGCTTAGATTTAGGATTAGGAAA
CATGACAGAGTCTGGAATAACTGAATTGAACCGTGACAAAAGAGTTTTAA
AATTTGAATTGACAACATCATAATTTTTTCAACCTTTAGGTGATATCAAG
CGTATTACCAGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGGCTAT
GTACAATGACTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGTAGTG
GCCGCAAGAAGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGATGAA
GATAACGAGTCTTTATTTACAACTGATAATCCTGACGGAATCGATCCGCG
CCGTGTGAACCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCAGAAT
ACGTTCGCACGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTTGCTT
GCCGCGTTCGTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCAGCAA
CTATCCACCACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATACCAA
GTGCCTTTTATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTTTTGG
TTTTTGATTATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAAGGAG
TTGTGCGATTTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATGTATG
TGACTTCGATGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTACGGTA
TGCCTTTTTCTTATTGTGATGAACTTTTTGATTTTTATTCAATTCTCTAC
CTCACTCAAGTTGAAAATCGTAAACAGTAGAGTCTTGAACCTCTATAACT
CGAATGCCTCCTTAAACAAACAAGTTTGCTCGTCCCTTCTGCTAACAATG
GCTTATAAACCTTACTCCATAACTCGAAATTTCTTTAACTCGAAAAAATT
TGTATTCCCATGCGTGTTCGAGTTACGGGGTCTCAATTAAATCAAAACCA
TTTCTTTTTAGAAATATGCGACATTCTACAATCGTGCGTTTAGAGCATTT
GAGATTGTTTCTGGGGGAGGTATGGCTATGAATGGTGTTCGAACGTGCGG
TGATTATATGTTCAGTGGTCACACTGCAACACTTACCTTGTTAAATTTCT
TCGTAACTGAATGTAAGTGTTTTTGATCAATTTCACGTTTCTTTTTTTTT
GTTCTTTTTTGTACAGTAGTGTGTTTTTAACTCGAACGAAGTTTTCTTAA
GTCCCTTTAGTTGACAATGCCTTATAGTCCTTACTCCATAACTCTAAATT
TCCTCAACTTTTTTGTACAGTAGTCTCTTTAACTTGAATAAGTTTTATGG
TCCCTTCAGTTAACAATGCCTTATAAGTTACTCCATATCTAGAGATTTCC
TTAATTTGAACAAATTTGCGTTTTTTTATAATAAGCAGTAAATCTTAGCT
GAAGCACGGCTATTCTTACTTTAGTGATTTTAAAGCTTAATTGTTCCTAG
ATTGTCTTAATATATACTAACTTAATTCACTTATTGACTTAGGTGATTAG
GTAATTTCTAAAAACTGAGGCTGGAATTGTTTCTAGATTTTTGCCAATTG
GGCCTCGTGTTAATTGTTAACTAACAGCAATATACGGGTTGCAAAAGTAT
ATCAATGAAGTCAAAACATGTGATTACTCGAAAAAGTTCACGTGATTTTA
TTCCCATGTTACTTGCTTTACAACTTACAGCTGATAACTTTATTAGTGTC
AATAAATTCGAACCAATCAGAAATAAATGTAACAAGCATATAAGAATTTT
GAGTAAAAGCATGATTTGTCTTCAGACTTTTTATTTTGCAACCTGTGTAT
TAGTTAATTTTGATCTCCTAGAAACACCAGTTTCACGGAACAAGGTCGAG
TGCGAGATTCTTTTTCAATAGAAATTTAGAAACAATTAACATCTTTGGTC
GCAGCTCACGCTTTTGTTTTTACAGAAAGATCAGACCAGAAAAAGGCTGA
TGTTTTTTAGTTTACTTGCATAACAGTATTATGTTCCAATTAGAAGTTCT
GAAGGCTTAACAGTATGAAGCAAGCATCTTTTGAGAGTTCCAGAAAAGCA
AGCAATATTTTCAGGTAAACATTTTATTTTTGTAATTCGACAACCTTTTC
GGCCCCTTTTTAATTGGAGTAAACATCTGCGTTAGTTAAGTAATAATTGT
TATAAAAAGGGCAAAAAATAGGAATGTGAAACGAACCATTTTGCCGCAAC
CTGAAATAATCCATGGCAAAAAAAGAAGTTAAAATTACGCCAGTAAGGGC
CGATGAAAAAAGGGCCGATAAGGTATTTATAAAGGCAAGACTTAAGATTC
ATGTAGCTAATAAGTATTTTACAAGTAAAGAATTAGAAAAGAGTAACAAA
CTTAAGATACAAGTATAAACATTTTGAGATACTCTAGCTTTAGACTTTAT
TTCTACCATCTTTCACTTTAGATACACCGAGAAAATGGTATGTTCTCCAT
ACCTTCTGTTGGTTATTAAACGCCTTTGGTGTCTTCTTCATCCTAGCCGC
ACACGAACATTATTCCATAGATGTCTTGATTGCCTTCTACATTTCGTCTC
GATTGTTCTTATATTATCACACGTTAGCCAGTACCGTACAATTTCGTACA
AGTGATCAGAAGAGAAGACGTATTTGGTTTCCTATGTTTTGGTTTTTCGA
GTACGGATGCAGGCTAGTTATTCCAAATGAATTCGAATGGCCGTTCACTT
ATCGGAAACTACAAGACGTTTTCCCGTCTTTGAGAAACGACAGTAGTAGT
GGCGCTGGTACGCCGGTAAAAAGTAGTGGTGGCGCTGGTACGCCGGCTAA
AAGTGGTAGCACGCCGGGAAAAAAGAAGAAGAGATGAAAATTATAAGGTG
TCTTCCCGATTATAGGAAAATGCTGTCTTTTCAAACGCTACAGATAATAA
AAATCTGCAAAAATATGACCTTGGACTTGGTTATATTGTCAAAAAATCAT
TATGATTAATGATAACTAGGATATTTGCGATAACAGATTTTTTTTTGTTT
TAGATGTCAATGGTTTAAAGTTTTAATCTTTTTTTTTAACTACCCGGACT
CTGGCCATTTCGTCTGGTCATTTTCGCTAGTGGTGTTTGCCCGAATTGTG
AACTTGATAGATATTGGGATAATGAAAACCTCTCTATTTTGACTGAAATA
CTATATCTTCCACTGTGGATAGTACTGGCTAATATTCTTATAATATTTTG
AAATGGGGTAATTTAGAAATGGTCTTTAATCCCTATGTTGAGGAGGTATG
CCTTCCAACTTGGAAAATAAAAAAATCAAGGGATCGACAATCCAGGGTGG
TCCCAAAAATGAAAGGGGTCCTGAAAAATAGAAAAAAAGTCCAGGAGGTT
ACCTTTTCCAAAAAAGACTTCCTCAAACAAAGGTGGTAAAAAATTTTCTG
CAATAACCCAATGTGACAGAAGCTTGAATTTTCTTTGTAGGTCGCCCGTA
AATTTAATTTTTATGATATAATATATAGTATTTCTTGCATTTTTATCTAA
TTTATATGGCATTTTTTATTAACAATAGATTTTGAGTACGTAGGACATTT
TGAGCATATTTTAGTAGACAGATATTATATTCTTTGAACTTTTTAAAAAA
TCTTTGATATTTTTGTATATTACTCGACGCTGCTTACTTAGTTTATACCT
CCAGCGCTGACATATCCTTTTAATCTTTGGCTTAGCTTTTTGATTGTTCG
AAATTTTCAGCCTAAAATATCTTAAAAGATGGTTAATAATTAGTATTTTC
TTACATGTGGGGCTCCTAGCTGTTCCAGATCTTTATTTTTTATTTGTTTG
CCTTATCCGCATCAAAAGTGACAATTCAGTCCTGTAATCTAAACTCTTTT
CTGCCTTATTTTACCCCCTCACACCATTTTTGATTTTACAGTTTTTGAAC
TTTCTTTCACTCGTCTTGCTCAGTGGATGGGATGTTTCATCAAGAAAGCT
TTTTTAAAGCTACCATCCTCTGCTCACTGCATTCCCTTAAAAGATTTTAC
GGAACTTTGATAATACAATTGATTCTCCAGGCAATATTTTCAACTCGAAC
ACGCACGGAAAACGCAAATATTTTCGAGTTAAGGTGGTTTTAAGTTATGG
AGAAATGTTTATGAGGCATTGGGACCACAAAACTGGTTCGAGTTAAGGAG
ACATTCGAGTTATAAGATTCCAGTTAAAGAGACTCTGAAGAAGATGTATA
TATCCTTCTTTTTAAAGCCATTTATTAAAGTTTTTTTTTTGTATTTTTAC
TATAGATTAGGTATTATTTTATAATATTGTACAATACACATAATTGTGAC
CGTGAAATTTGTCACGTCAATTATCGAAAGATAAAGACAAATTTACCAAC
TTCTAATTTAGCAATATTCAGTGCATTTAAAAAAAAAACATTTTAGCATT
GAGAATAAATTGG

Coding sequence (CDS) from alignment at sc0000157:18323..26485-

>TCONS_00012891 ID=TCONS_00012891|Name=TCONS_00012891|organism=Clytia hemisphaerica|type=CDS|length=5652bp|location=Sequence derived from alignment at sc0000157:18323..26485- (Clytia hemisphaerica)
ATACACCGAGAAAATGGTATGTTCTCCATACCTTCTGTTGGTTATTAAAC
GCCTTTGGTGTCTTCTTCATCCTAGCCGCACACGAACATTATTCCATAGA
TGTCTTGATTGCCTTCTACATTTCGTCTCGATTGTTCTTATATTATCACA
CGTTAGCCAGTACCGTACAATTTCGTACAAGTGATCAGAAGAGAAGACGT
ATTTGGTTTCCTATGTTTTGGTTTTTCGAGTACGGATGCAGGCTAGTTAT
TCCAAATGAATTCGAATGGCCGTTCACTTATCGGAAACTACAAGACGTTT
TCCCGTCTTTGAGAAACGACAGTAGTAGTGGCGCTGGTACGCCGGTAAAA
AGTAGTGGTGGCGCTGGTACGCCGGCTAAAAGTGGTAGCACGCCGGGAAA
AAAGAAGAAGAGATGAAAATATGCGACATTCTACAATCGTGCGTTTAGAG
CATTTGAGATTGTTTCTGGGGGAGGTATGGCTATGAATGGTGTTCGAACG
TGCGGTGATTATATGTTCAGTGGTCACACTGCAACACTTACCTTGTTAAA
TTTCTTCGTAACTGAATGTGATATCAAGCGTATTACCAGTGCAGTTGATC
GCTTACGTGCATTTAACAATGCGGCTATGTACAATGACTTTGCCGATGGG
TTTAGTCCAAAACCGGGTGGTGGTAGTGGCCGCAAGAAGCGGCGTAAACA
ACGCATTATGTCGTTTTCCGATGATGAAGATAACGAGTCTTTATTTACAA
CTGATAATCCTGACGGAATCGATCCGCGCCGTGTGAACCCTTTGGAAGAG
GAAATCAAGAACGCTCTTGTGTCAGAATACGTTCGCACGGCTATCAGTGC
TGTGTACGCCTTTTCTGTATTCTTGCTTGCCGCGTTCGTGTTAGTAGTAG
TCCACGATAGGTTACCAGATACCAGCAACTATCCACCACTTCCTGATGTC
GTCCTCGAAACCATACCAGTCATACCAAGTGCCTTTTATTGGTGTGAAAT
ATGCGGTGGCATTTTGATGAGTTTTTGGTTTTTGATTATCATCTTTCACA
AACATCGATTGGTTGTTTTTAGAAGGAGTTGTGCGATTTCGGGCACGATT
TTCTTGTTGCGTTGTTTCACTATGTATGTGACTTCGATGAGTGTTCCAGG
CAAACATTTGCAATGCTCGCCTACGGTAACATACTTAAAAAAGACAAGGA
ATAAAACTAGATTCAAAACTCAGCGGAAAATGAGTACATCCAATAAATCT
ATCCATGAATGGACAGTATCAGATGTTGCTGAATGGCTGGATGAGAATAA
TTTATCCAAACATAAAGCATTATTATGTGATGAACACCAGATTGATGGCA
GTGCCTTGATATCGTTGAACGAAAGTGATTTACGAAAACCTCCTGTGGAA
ATGACCGTGCTAGATACACCGAGAAAATGGTATGTTCTCCATACCTTCTG
TTGGTTATTAAACGCCTTTGGTGTCTTCTTCATCCTAGCCGCACACGAAC
ATTATTCCATAGATGTCTTGATTGCCTTCTACATTTCGTCTCGATTGTTC
TTATATTATCACACGTTAGCCAGTACCGTACAATTTCGTACAAGTGATCA
GAAGAGAAGACGTATTTGGTTTCCTATGTTTTGGTTTTTCGAGTACGGAT
GCAGGCTAGTTATTCCAAATGAATTCGAATGGCCGTTCACTTATCGGAAA
CTACAAGACGTTTTCCCGTCTTTGAGAAACGACAGTAGTAGTGGCGCTGG
TACGCCGGTAAAAAGTAGTGGTGGCGCTGGTACGCCGGCTAAAAGTGGTA
GCACGCCGGGAAAAAAGAAGAAGAGATGAAAATATGCGACATTCTACAAT
CGTGCGTTTAGAGCATTTGAGATTGTTTCTGGGGGAGGTATGGCTATGAA
TGGTGTTCGAACGTGCGGTGATTATATGTTCAGTGGTCACACTGCAACAC
TTACCTTGTTAAATTTCTTCGTAACTGAATGTGATATCAAGCGTATTACC
AGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGGCTATGTACAATGA
CTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGTAGTGGCCGCAAGA
AGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGATGAAGATAACGAG
TCTTTATTTACAACTGATAATCCTGACGGAATCGATCCGCGCCGTGTGAA
CCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCAGAATACGTTCGCA
CGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTTGCTTGCCGCGTTC
GTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCAGCAACTATCCACC
ACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATACCAAGTGCCTTTT
ATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTTTTGGTTTTTGATT
ATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAAGGAGTTGTGCGAT
TTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATGTATGTGACTTCGA
TGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTACGGTAACATACTTA
AAAAAGACAAGGAATAAAACTAGATTCAAAACTCAGCGGAAAATGAGTAC
ATCCAATAAATCTATCCATGAATGGACAGTATCAGATGTTGCTGAATGGC
TGGATGAGAATAATTTATCCAAACATAAAGCATTATTATGTGATGAACAC
CAGATTGATGGCAGTGCCTTGATATCGTTGAACGAAAGTGATTTACGAAA
ACCTCCTGTGGAAATGACCGTGCTAGATACACCGAGAAAATGGTATGTTC
TCCATACCTTCTGTTGGTTATTAAACGCCTTTGGTGTCTTCTTCATCCTA
GCCGCACACGAACATTATTCCATAGATGTCTTGATTGCCTTCTACATTTC
GTCTCGATTGTTCTTATATTATCACACGTTAGCCAGTACCGTACAATTTC
GTACAAGTGATCAGAAGAGAAGACGTATTTGGTTTCCTATGTTTTGGTTT
TTCGAGTACGGATGCAGGCTAGTTATTCCAAATGAATTCGAATGGCCGTT
CACTTATCGGAAACTACAAGACGTTTTCCCGTCTTTGAGAAACGACAGTA
GTAGTGGCGCTGGTACGCCGGTAAAAAGTAGTGGTGGCGCTGGTACGCCG
GCTAAAAGTGGTAGCACGCCGGGAAAAAAGAAGAAGAGATGAAAATATGC
GACATTCTACAATCGTGCGTTTAGAGCATTTGAGATTGTTTCTGGGGGAG
GTATGGCTATGAATGGTGTTCGAACGTGCGGTGATTATATGTTCAGTGGT
CACACTGCAACACTTACCTTGTTAAATTTCTTCGTAACTGAATGTGATAT
CAAGCGTATTACCAGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGG
CTATGTACAATGACTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGT
AGTGGCCGCAAGAAGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGA
TGAAGATAACGAGTCTTTATTTACAACTGATAATCCTGACGGAATCGATC
CGCGCCGTGTGAACCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCA
GAATACGTTCGCACGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTT
GCTTGCCGCGTTCGTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCA
GCAACTATCCACCACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATA
CCAAGTGCCTTTTATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTT
TTGGTTTTTGATTATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAA
GGAGTTGTGCGATTTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATG
TATGTGACTTCGATGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTAC
GGTAACATACTTAAAAAAGACAAGGAATAAAACTAGATTCAAAACTCAGC
GGAAAATGAGTACATCCAATAAATCTATCCATGAATGGACAGTATCAGAT
GTTGCTGAATGGCTGGATGAGAATAATTTATCCAAACATAAAGCATTATT
ATGTGATGAACACCAGATTGATGGCAGTGCCTTGATATCGTTGAACGAAA
GTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCTAGATACACCGAGA
AAATGGTATGTTCTCCATACCTTCTGTTGGTTATTAAACGCCTTTGGTGT
CTTCTTCATCCTAGCCGCACACGAACATTATTCCATAGATGTCTTGATTG
CCTTCTACATTTCGTCTCGATTGTTCTTATATTATCACACGTTAGCCAGT
ACCGTACAATTTCGTACAAGTGATCAGAAGAGAAGACGTATTTGGTTTCC
TATGTTTTGGTTTTTCGAGTACGGATGCAGGCTAGTTATTCCAAATGAAT
TCGAATGGCCGTTCACTTATCGGAAACTACAAGACGTTTTCCCGTCTTTG
AGAAACGACAGTAGTAGTGGCGCTGGTACGCCGGTAAAAAGTAGTGGTGG
CGCTGGTACGCCGGCTAAAAGTGGTAGCACGCCGGGAAAAAAGAAGAAGA
GATGAAAATATGCGACATTCTACAATCGTGCGTTTAGAGCATTTGAGATT
GTTTCTGGGGGAGGTATGGCTATGAATGGTGTTCGAACGTGCGGTGATTA
TATGTTCAGTGGTCACACTGCAACACTTACCTTGTTAAATTTCTTCGTAA
CTGAATGTGATATCAAGCGTATTACCAGTGCAGTTGATCGCTTACGTGCA
TTTAACAATGCGGCTATGTACAATGACTTTGCCGATGGGTTTAGTCCAAA
ACCGGGTGGTGGTAGTGGCCGCAAGAAGCGGCGTAAACAACGCATTATGT
CGTTTTCCGATGATGAAGATAACGAGTCTTTATTTACAACTGATAATCCT
GACGGAATCGATCCGCGCCGTGTGAACCCTTTGGAAGAGGAAATCAAGAA
CGCTCTTGTGTCAGAATACGTTCGCACGGCTATCAGTGCTGTGTACGCCT
TTTCTGTATTCTTGCTTGCCGCGTTCGTGTTAGTAGTAGTCCACGATAGG
TTACCAGATACCAGCAACTATCCACCACTTCCTGATGTCGTCCTCGAAAC
CATACCAGTCATACCAAGTGCCTTTTATTGGTGTGAAATATGCGGTGGCA
TTTTGATGAGTTTTTGGTTTTTGATTATCATCTTTCACAAACATCGATTG
GTTGTTTTTAGAAGGAGTTGTGCGATTTCGGGCACGATTTTCTTGTTGCG
TTGTTTCACTATGTATGTGACTTCGATGAGTGTTCCAGGCAAACATTTGC
AATGCTCGCCTACGGTAACATACTTAAAAAAGACAAGGAATAAAACTAGA
TTCAAAACTCAGCGGAAAATGAGTACATCCAATAAATCTATCCATGAATG
GACAGTATCAGATGTTGCTGAATGGCTGGATGAGAATAATTTATCCAAAC
ATAAAGCATTATTATGTGATGAACACCAGATTGATGGCAGTGCCTTGATA
TCGTTGAACGAAAGTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCT
AG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007232	XLOC_007232	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012891-exon-sc0000157-1575043694:26246..26485	TCONS_00012891-exon-sc0000157-1575043694:26246..26485	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1575043694:22039..22646	TCONS_00012891-exon-sc0000157-1575043694:22039..22646	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1575043694:21624..21774	TCONS_00012891-exon-sc0000157-1575043694:21624..21774	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1575043694:18323..20314	TCONS_00012891-exon-sc0000157-1575043694:18323..20314	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1510915933:26246..26485	TCONS_00012891-exon-sc0000157-1510915933:26246..26485	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1510915933:22039..22646	TCONS_00012891-exon-sc0000157-1510915933:22039..22646	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1510915933:21624..21774	TCONS_00012891-exon-sc0000157-1510915933:21624..21774	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1510915933:18323..20314	TCONS_00012891-exon-sc0000157-1510915933:18323..20314	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1491911889:26246..26485	TCONS_00012891-exon-sc0000157-1491911889:26246..26485	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1491911889:22039..22646	TCONS_00012891-exon-sc0000157-1491911889:22039..22646	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1491911889:21624..21774	TCONS_00012891-exon-sc0000157-1491911889:21624..21774	Clytia hemisphaerica	exon
TCONS_00012891-exon-sc0000157-1491911889:18323..20314	TCONS_00012891-exon-sc0000157-1491911889:18323..20314	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012891-protein	TCONS_00012891-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000157	supercontig	sc0000157:18323..26485 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2062	2.20114	0.880788	0.522679	17.9371	12.5705	10.903	13.5073	10.9398	13.178	11.5764	6.72659	5.1397	4.35114	6.46653	6.88517	7.18957	5.59304	2.73837	4.76639	4.94431	5.64725	9.56271	9.45162	4.13496	5.65772	12.6251	11.8876	13.6024	11.8974

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR025749	Sphingomyelin_synth-like_dom
IPR013761	SAM/pointed

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00012891 vs. Swiss-Prot (Human)
Match: SAMD8 (Sphingomyelin synthase-related protein 1 OS=Homo sapiens GN=SAMD8 PE=1 SV=2)

HSP 1 Score: 365.925 bits (938), Expect = 9.073e-116
Identity = 192/409 (46.94%), Postives = 262/409 (64.06%), Query Frame = 3

Query:   57 MSTSNK-SIHEWTVSDVAEWLDENNLSKHKALLCDEHQIDGSALISLNESDLRKPPVEMTVLGDIKRITSAVDRLRAFNNAAMYN-DFADGFXXXXXXXXXXXXXXXXXIMSFSDDEDNESLFTTDNPDGIDPRRVNPLEEEIKNALVSEYVRTAISXXXXXXXXXXXXXXXXXXHDRLPDTSNYPPLPDVVLETIPVIPSAFYWCEICGGILMSFWFLIIIFHKHRLVVFRRSCAISGTIFLLRCFTMYVTSMSVPGKHLQCSPTKYATFYNRAFRAFEIVSGGGMAMNGVRTCGDYMFSGHTATLTLLNFFVTEYTPRKWYVLHTFCWLLNAFGVFFILAAHEHYSIDVLIAFYISSRLFLYYHTLASTVQFRTSDQKRRRIWFPMFWFFEYGCRLVIPNEFEWPFT 1277
            M+  N+  I  WT   VA WL +    ++  +LC++H++DG  L++L E DLR PP+E+ VLGDIKR+  +V +L+  +   +    +                +    + +     D +   T  N D    + +N   +     L  EY +T +S +Y F VF   +F++V+VH+R+PD   YPPLPD+ L+++P IP AF   E+CG IL   W L+++ HKHR ++ RR C++ GT+FLLRCFTM+VTS+SVPG+HLQC+   Y + + +  RAF I SG GM + GV TCGDYMFSGHT  LT+LNFFVTEYTPR W  LHT  W+LN FG+FFILAAHEHYSIDV IAFYI++RLFLYYHTLA+T  ++ S  +R RIWFPMF FFE      +PNE+ WPF+
Sbjct:    1 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIKVLGDIKRLMLSVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCDGPITDLNSD--QYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLFLYYHTLANTRAYQQS--RRARIWFPMFSFFECNVNGTVPNEYCWPFS 405

The following BLAST results are available for this feature:

BLAST of TCONS_00012891 vs. Swiss-Prot (Human)

BLAST of TCONS_00012891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SAMD8	9.073e-116	46.94	Sphingomyelin synthase-related protein 1 OS=Homo s...	[more]

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TCONS_00012891 (transcript) - C. hemisphaerica