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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012891 ID=TCONS_00012891|Name=TCONS_00012891|organism=Clytia hemisphaerica|type=transcript|length=2991bp
GAGTAACATACTTAAAAAAGACAAGGAATAAAACTAGATTCAAAACTCAG
CGGAAAATGAGTACATCCAATAAATCTATCCATGAATGGACAGTATCAGA
TGTTGCTGAATGGCTGGATGAGAATAATTTATCCAAACATAAAGCATTAT
TATGTGATGAACACCAGATTGATGGCAGTGCCTTGATATCGTTGAACGAA
AGTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCTAGGTGATATCAA
GCGTATTACCAGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGGCTA
TGTACAATGACTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGTAGT
GGCCGCAAGAAGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGATGA
AGATAACGAGTCTTTATTTACAACTGATAATCCTGACGGAATCGATCCGC
GCCGTGTGAACCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCAGAA
TACGTTCGCACGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTTGCT
TGCCGCGTTCGTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCAGCA
ACTATCCACCACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATACCA
AGTGCCTTTTATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTTTTG
GTTTTTGATTATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAAGGA
GTTGTGCGATTTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATGTAT
GTGACTTCGATGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTACGaa
atatgCGACATTCTACAATCGTGCGTTTAGAGCATTTGAGATTGTTTCTG
GGGGAGGTATGGCTATGAATGGTGTTCGAACGTGCGGTGATTATATGTTC
AGTGGTCACACTGCAACACTTACCTTGTTAAATTTCTTCGTAACTGAATA
TACACCGAGAAAATGGTATGTTCTCCATACCTTCTGTTGGTTATTAAACG
CCTTTGGTGTCTTCTTCATCCTAGCCGCACACGAACATTATTCCATAGAT
GTCTTGATTGCCTTCTACATTTCGTCTCGATTGTTCTTATATTATCACAC
GTTAGCCAGTACCGTACAATTTCGTACAAGTGATCAGAAGAGAAGACGTA
TTTGGTTTCCTATGTTTTGGTTTTTCGAGTACGGATGCAGGCTAGTTATT
CCAAATGAATTCGAATGGCCGTTCACTTATCGGAAACTACAAGACGTTTT
CCCGTCTTTGAGAAACGACAGTAGTAGTGGCGCTGGTACGCCGGTAAAAA
GTAGTGGTGGCGCTGGTACGCCGGCTAAAAGTGGTAGCACGCCgggaaaa
aagaagaagagatGAAAATTATAAGGTGTCTTCCCGATTATAGGAAAATG
CTGTCTTTTCAAACGCTACAGAtaataaaaatctgcaaaaatatgACCTT
GGACTTGGTTATATTGTCAAAAAATCATTATGATTAATGATAACTAGGAT
ATTTGCGataacagatttttttttgttttagatgTCAATGGTTTAaagtt
ttaatctttttttttaactacCCGGACTCTGGCCATTTCGTCTGGTCATT
TTCGCTAGTGGTGTTTGCCCGAATTGTGAACTTGATAGATATTGGGATAA
TGAAAACCTCTCTATTTTGACTGAAATACTATATCTTCCACTGTGGATAG
TACTGGCTAATATTcttataatattttgaaatgggGTAATTTAGAAATGG
TCTTTAatccctatgttgaggaggtatgCCTTCCaacttggaaaataaaa
aaatcaagggATCGACAATCCAGGGTGGTCCCAAAAATGAAAGGGGtcct
gaaaaatagaaaaaaagtccAGGAGGTTACCTTTTCCAAAAAAGACTTCC
TCAAACAAAGGTGGTAAAAAATTTTCTGCAATAACCCAATGTGACAGAAG
CTTGAATTTTCTTTGTAGGTCGCCcgtaaatttaatttttatgataTAAT
ATATAGTATTTCTTgcatttttatctaatttataTGGCATTTTTTattaa
caatagattttgagTACGTAGGACATTTTGAGCATATTTTAGTAGACAGA
TATTATATTctttgaactttttaaaaaatctttgatatttttgtatatta
CTCGACGCTGCTTACTTAGTTTATACCTCCAGCGCTGACATATCCTTTTA
ATCTTTGGCTTAGCTTTTTGATTGTTcgaaattttcagcctaaaatatcT
TAAAAGATGGTTAATAATTAGTATTTTCTTACATGTGGGGCTCCTAGCTG
TTCCagatctttattttttatttgtttgccTTATCCGCATCAAAAGTGAC
AATTCAGTCCTGTAATCTAAACTCTTTTCTGCCTTATTTTACCCCCTCAC
ACCATTTTTGATTTTACAGTTTTTGAACTTTCTTTCACTCGTCTTGCTCA
GTGGATGGGATGTTTCATCAAGAAAGCTTTTTTAAAGCTACCATCCTCTG
CTCACTGCATTCCCTTAAAAGATTTTACGGAACTTTGATAATACAATTGA
TTCTCCAGGCAATATTTtcaactcgaacacgcacggaaAACGCAAATATT
TTCGAGTTAAGGTGGTTTTAAGTTATGGAGAAATGTTTATGAGGCATTGG
GACCACAAAActggttcgagttaaggagacattcgagttataagATTCCA
GTTAAAGAGACTCTGAAGAAGATGTATATATCCTTCTTTTTAAAGCCAtt
tattaaagttttttttttgtatttttactaTAGATTAGGTATTATTTTAT
AATATTGTACAATACACATAATTGTGACCGTGAAATTTGTCACGTCAATT
ATCGAAAGATAAAGACAAATTTACCAACTTCTAATTTAGCAATATTCagt
gcatttaaaaaaaaaacattttagcaTTGAGAATAAATTGG Run BLAST on NCBI protein sequence of TCONS_00012891-protein >TCONS_00012891-protein ID=TCONS_00012891-protein|Name=TCONS_00012891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
VTYLKKTRNKTRFKTQRKMSTSNKSIHEWTVSDVAEWLDENNLSKHKALL
CDEHQIDGSALISLNESDLRKPPVEMTVLGDIKRITSAVDRLRAFNNAAM
YNDFADGFSPKPGGGSGRKKRRKQRIMSFSDDEDNESLFTTDNPDGIDPR
RVNPLEEEIKNALVSEYVRTAISAVYAFSVFLLAAFVLVVVHDRLPDTSN
YPPLPDVVLETIPVIPSAFYWCEICGGILMSFWFLIIIFHKHRLVVFRRS
CAISGTIFLLRCFTMYVTSMSVPGKHLQCSPTKYATFYNRAFRAFEIVSG
GGMAMNGVRTCGDYMFSGHTATLTLLNFFVTEYTPRKWYVLHTFCWLLNA
FGVFFILAAHEHYSIDVLIAFYISSRLFLYYHTLASTVQFRTSDQKRRRI
WFPMFWFFEYGCRLVIPNEFEWPFTYRKLQDVFPSLRNDSSSGAGTPVKS
SGGAGTPAKSGSTPGKKKKR Run BLAST on NCBI transcript from alignment at sc0000157:18323..26485- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012891 ID=TCONS_00012891|Name=TCONS_00012891|organism=Clytia hemisphaerica|type=transcript|length=8163bp|location=Sequence derived from alignment at sc0000157:18323..26485- (Clytia hemisphaerica)
GAGTAACATACTTAAAAAAGACAAGGAATAAAACTAGATTCAAAACTCAG
CGGAAAATGAGTACATCCAATAAATCTATCCATGAATGGACAGTATCAGA
TGTTGCTGAATGGCTGGATGAGAATAATTTATCCAAACATAAAGCATTAT
TATGTGATGAACACCAGATTGATGGCAGTGCCTTGATATCGTTGAACGAA
AGTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCTAGGTATTCTTCA
CTTTTAGCGATTTTATTTTATTTTTGAATTTGTTTATAATTGTTGAAAAA
CAATCGAAATTTCATTTTTGGTAAGTAAGTAAGTAAGTAATAGTTTATTT
CATGTTGACGCAAAGGTAGCAACAAAGGCTAATAAAAGTCAACGCTACTT
TACAATTAAAAAAGACTAATGTTTTGTTGGCAGCTCATCGTCGCTGCTAC
TGAGGCTAGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAATGAAAAGTAAATAACA
CTCATGATTGATCACGAAACATAAAGGCCTATCTACACTAGTCAATTATA
GATTGTTTTCTTCCTTTGTCGTTCACCCCTGGCTCAGTAGTAAAATTTCG
GTACATCACGAAAGACTTCTTTGAACGTTTTAGGGAGTAGAAATCTCGTG
GCAATCATTGCAAAGTGGAGTGAAGATCGAATTATCAATATTTTAGTTTT
CAGTAAATTTCTTAGGCCCCTTCTGAGAGATTTTTCAAGTTACAAGTCTC
CTGTTTTTCCGTTGGAAAAATATGTGGATGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTTCTATTCTGTAACGCGGAAACCATATTTCTAGACAT
TTCTAGACTATTCTGTTATGCAGAAACCTTTTTTCTGAACATAATCTAAA
CATATTCTGTTATTCAAACACGATTTTTTGAACATTTTCTAGCCTATTCA
GATCATGTCTAGACTATTTTTCTTACATCGAAACCATCTCTTTTGGCTTC
TTCTATGCTATCCTGTAGATACCGTTATTGTGCGTTATTCCAGGTACATC
TATGATGCGTAAGCCATTATTACAAGTATCTATGCTATTCTGTTACGCAG
TAACCACTATTCCAGGTTATTCTGTTATGCGAAACCACTATTCCAGGTTA
TTCTGTTATAGAGAAACCACCATTCCAGGTTATTCTGTTATGCGGAAACC
ATCATTTCATATTATTGTTATACGGAAACCACTATTCCAGGTTATTCTGT
TATAGGGAAACCACCATTCCAGATTATTCTGTTATGCGGAAACCATGATT
CCAGATTATTCTGTTATGCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
ATTCGAATTAGAGAAAGAGTGAGATCGGTATAGAGAATCATTCGAATTAG
AGAGAGCGATCAATAAAGAAAATCATTCGAATTAGAGAGAGAGAGAGAGT
GATCGTTATTGTGATCTCAGGTTGGAAAATCTTAGCACTGAAAAAGTTAG
AGAAAAGCCGTTTTAACCAATATTTCCTCTAACAGGTGGAAAACATGAAA
CAAAAGTGGCGAGTGTGAAAAGAGCTTAAACCAACAATGTTTAAAGAAAC
TGAGAGAGAAAAAAGAAAAAGTATTAGACGATCATGTTTATTTAACGCAT
CAATCATCAATAGCTCTATTTATTTGATTTGATCACGCTATGAATATTAT
AGTGGTTTCCACATTCCAAGACGTTTCCGCATAGCGATATTAACAGAGTC
CATGAATTATGATGTTTTTTCTTTTTGATTCGATGTCTCGTTTTTCTCTC
CTCTCCTCTTCTTTTTGTTCCGCAACAACAGATTTAAGATTTTCCTTGTG
TGCTTTGGTTATATCAGCGTAGGTTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTGTTGATGACTTCTCGGTTTTTGGTCAGTTGT
TTTTTGAGTTTTTTGATTTCGTCGTCTTTTTTAGCAATCTGCTCTTGCAT
CATATGGTACTTGTTTTCTCCGATTTTACTTCTTGAGGATCTCGTTATTC
GCACACAATTGTGACATACATATTGATTATTGTACGTGTTAGCGAATATT
TGCAGTTGGTAAAGTGGCAATTGTGTGCATTCGTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGGTCTTGGGTGTTTTTATCGCGATTTTT
GTTCATATTTAGCGAATTTCGATGCTTCTTTGAGTTTCCACCATTTTTTT
GAAAGCGATGCAGAACACGTCTGGTGGTAAGAAAAATATCCTCAATTCTT
CTATTGATATGGTATTATATCCTATATGAGACTGTTTGTATGAAAAAAAT
TTCTGGTTTTACTAGGTGATTTTATCTAGCTTAGATTTAGGATTAGGAAA
CATGACAGAGTCTGGAATAACTGAATTGAACCGTGACAAAAGAGTTTTAA
AATTTGAATTGACAACATCATAATTTTTTCAACCTTTAGGTGATATCAAG
CGTATTACCAGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGGCTAT
GTACAATGACTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGTAGTG
GCCGCAAGAAGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGATGAA
GATAACGAGTCTTTATTTACAACTGATAATCCTGACGGAATCGATCCGCG
CCGTGTGAACCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCAGAAT
ACGTTCGCACGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTTGCTT
GCCGCGTTCGTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCAGCAA
CTATCCACCACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATACCAA
GTGCCTTTTATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTTTTGG
TTTTTGATTATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAAGGAG
TTGTGCGATTTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATGTATG
TGACTTCGATGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTACGGTA
TGCCTTTTTCTTATTGTGATGAACTTTTTGATTTTTATTCAATTCTCTAC
CTCACTCAAGTTGAAAATCGTAAACAGTAGAGTCTTGAACCTCTATAACT
CGAATGCCTCCTTAAACAAACAAGTTTGCTCGTCCCTTCTGCTAACAATG
GCTTATAAACCTTACTCCATAACTCGAAATTTCTTTAACTCGAAAAAATT
TGTATTCCCATGCGTGTTCGAGTTACGGGGTCTCAATTAAATCAAAACCA
TTTCTTTTTAGAAATATGCGACATTCTACAATCGTGCGTTTAGAGCATTT
GAGATTGTTTCTGGGGGAGGTATGGCTATGAATGGTGTTCGAACGTGCGG
TGATTATATGTTCAGTGGTCACACTGCAACACTTACCTTGTTAAATTTCT
TCGTAACTGAATGTAAGTGTTTTTGATCAATTTCACGTTTCTTTTTTTTT
GTTCTTTTTTGTACAGTAGTGTGTTTTTAACTCGAACGAAGTTTTCTTAA
GTCCCTTTAGTTGACAATGCCTTATAGTCCTTACTCCATAACTCTAAATT
TCCTCAACTTTTTTGTACAGTAGTCTCTTTAACTTGAATAAGTTTTATGG
TCCCTTCAGTTAACAATGCCTTATAAGTTACTCCATATCTAGAGATTTCC
TTAATTTGAACAAATTTGCGTTTTTTTATAATAAGCAGTAAATCTTAGCT
GAAGCACGGCTATTCTTACTTTAGTGATTTTAAAGCTTAATTGTTCCTAG
ATTGTCTTAATATATACTAACTTAATTCACTTATTGACTTAGGTGATTAG
GTAATTTCTAAAAACTGAGGCTGGAATTGTTTCTAGATTTTTGCCAATTG
GGCCTCGTGTTAATTGTTAACTAACAGCAATATACGGGTTGCAAAAGTAT
ATCAATGAAGTCAAAACATGTGATTACTCGAAAAAGTTCACGTGATTTTA
TTCCCATGTTACTTGCTTTACAACTTACAGCTGATAACTTTATTAGTGTC
AATAAATTCGAACCAATCAGAAATAAATGTAACAAGCATATAAGAATTTT
GAGTAAAAGCATGATTTGTCTTCAGACTTTTTATTTTGCAACCTGTGTAT
TAGTTAATTTTGATCTCCTAGAAACACCAGTTTCACGGAACAAGGTCGAG
TGCGAGATTCTTTTTCAATAGAAATTTAGAAACAATTAACATCTTTGGTC
GCAGCTCACGCTTTTGTTTTTACAGAAAGATCAGACCAGAAAAAGGCTGA
TGTTTTTTAGTTTACTTGCATAACAGTATTATGTTCCAATTAGAAGTTCT
GAAGGCTTAACAGTATGAAGCAAGCATCTTTTGAGAGTTCCAGAAAAGCA
AGCAATATTTTCAGGTAAACATTTTATTTTTGTAATTCGACAACCTTTTC
GGCCCCTTTTTAATTGGAGTAAACATCTGCGTTAGTTAAGTAATAATTGT
TATAAAAAGGGCAAAAAATAGGAATGTGAAACGAACCATTTTGCCGCAAC
CTGAAATAATCCATGGCAAAAAAAGAAGTTAAAATTACGCCAGTAAGGGC
CGATGAAAAAAGGGCCGATAAGGTATTTATAAAGGCAAGACTTAAGATTC
ATGTAGCTAATAAGTATTTTACAAGTAAAGAATTAGAAAAGAGTAACAAA
CTTAAGATACAAGTATAAACATTTTGAGATACTCTAGCTTTAGACTTTAT
TTCTACCATCTTTCACTTTAGATACACCGAGAAAATGGTATGTTCTCCAT
ACCTTCTGTTGGTTATTAAACGCCTTTGGTGTCTTCTTCATCCTAGCCGC
ACACGAACATTATTCCATAGATGTCTTGATTGCCTTCTACATTTCGTCTC
GATTGTTCTTATATTATCACACGTTAGCCAGTACCGTACAATTTCGTACA
AGTGATCAGAAGAGAAGACGTATTTGGTTTCCTATGTTTTGGTTTTTCGA
GTACGGATGCAGGCTAGTTATTCCAAATGAATTCGAATGGCCGTTCACTT
ATCGGAAACTACAAGACGTTTTCCCGTCTTTGAGAAACGACAGTAGTAGT
GGCGCTGGTACGCCGGTAAAAAGTAGTGGTGGCGCTGGTACGCCGGCTAA
AAGTGGTAGCACGCCGGGAAAAAAGAAGAAGAGATGAAAATTATAAGGTG
TCTTCCCGATTATAGGAAAATGCTGTCTTTTCAAACGCTACAGATAATAA
AAATCTGCAAAAATATGACCTTGGACTTGGTTATATTGTCAAAAAATCAT
TATGATTAATGATAACTAGGATATTTGCGATAACAGATTTTTTTTTGTTT
TAGATGTCAATGGTTTAAAGTTTTAATCTTTTTTTTTAACTACCCGGACT
CTGGCCATTTCGTCTGGTCATTTTCGCTAGTGGTGTTTGCCCGAATTGTG
AACTTGATAGATATTGGGATAATGAAAACCTCTCTATTTTGACTGAAATA
CTATATCTTCCACTGTGGATAGTACTGGCTAATATTCTTATAATATTTTG
AAATGGGGTAATTTAGAAATGGTCTTTAATCCCTATGTTGAGGAGGTATG
CCTTCCAACTTGGAAAATAAAAAAATCAAGGGATCGACAATCCAGGGTGG
TCCCAAAAATGAAAGGGGTCCTGAAAAATAGAAAAAAAGTCCAGGAGGTT
ACCTTTTCCAAAAAAGACTTCCTCAAACAAAGGTGGTAAAAAATTTTCTG
CAATAACCCAATGTGACAGAAGCTTGAATTTTCTTTGTAGGTCGCCCGTA
AATTTAATTTTTATGATATAATATATAGTATTTCTTGCATTTTTATCTAA
TTTATATGGCATTTTTTATTAACAATAGATTTTGAGTACGTAGGACATTT
TGAGCATATTTTAGTAGACAGATATTATATTCTTTGAACTTTTTAAAAAA
TCTTTGATATTTTTGTATATTACTCGACGCTGCTTACTTAGTTTATACCT
CCAGCGCTGACATATCCTTTTAATCTTTGGCTTAGCTTTTTGATTGTTCG
AAATTTTCAGCCTAAAATATCTTAAAAGATGGTTAATAATTAGTATTTTC
TTACATGTGGGGCTCCTAGCTGTTCCAGATCTTTATTTTTTATTTGTTTG
CCTTATCCGCATCAAAAGTGACAATTCAGTCCTGTAATCTAAACTCTTTT
CTGCCTTATTTTACCCCCTCACACCATTTTTGATTTTACAGTTTTTGAAC
TTTCTTTCACTCGTCTTGCTCAGTGGATGGGATGTTTCATCAAGAAAGCT
TTTTTAAAGCTACCATCCTCTGCTCACTGCATTCCCTTAAAAGATTTTAC
GGAACTTTGATAATACAATTGATTCTCCAGGCAATATTTTCAACTCGAAC
ACGCACGGAAAACGCAAATATTTTCGAGTTAAGGTGGTTTTAAGTTATGG
AGAAATGTTTATGAGGCATTGGGACCACAAAACTGGTTCGAGTTAAGGAG
ACATTCGAGTTATAAGATTCCAGTTAAAGAGACTCTGAAGAAGATGTATA
TATCCTTCTTTTTAAAGCCATTTATTAAAGTTTTTTTTTTGTATTTTTAC
TATAGATTAGGTATTATTTTATAATATTGTACAATACACATAATTGTGAC
CGTGAAATTTGTCACGTCAATTATCGAAAGATAAAGACAAATTTACCAAC
TTCTAATTTAGCAATATTCAGTGCATTTAAAAAAAAAACATTTTAGCATT
GAGAATAAATTGG Coding sequence (CDS) from alignment at sc0000157:18323..26485- >TCONS_00012891 ID=TCONS_00012891|Name=TCONS_00012891|organism=Clytia hemisphaerica|type=CDS|length=5652bp|location=Sequence derived from alignment at sc0000157:18323..26485- (Clytia hemisphaerica)
ATACACCGAGAAAATGGTATGTTCTCCATACCTTCTGTTGGTTATTAAAC
GCCTTTGGTGTCTTCTTCATCCTAGCCGCACACGAACATTATTCCATAGA
TGTCTTGATTGCCTTCTACATTTCGTCTCGATTGTTCTTATATTATCACA
CGTTAGCCAGTACCGTACAATTTCGTACAAGTGATCAGAAGAGAAGACGT
ATTTGGTTTCCTATGTTTTGGTTTTTCGAGTACGGATGCAGGCTAGTTAT
TCCAAATGAATTCGAATGGCCGTTCACTTATCGGAAACTACAAGACGTTT
TCCCGTCTTTGAGAAACGACAGTAGTAGTGGCGCTGGTACGCCGGTAAAA
AGTAGTGGTGGCGCTGGTACGCCGGCTAAAAGTGGTAGCACGCCGGGAAA
AAAGAAGAAGAGATGAAAATATGCGACATTCTACAATCGTGCGTTTAGAG
CATTTGAGATTGTTTCTGGGGGAGGTATGGCTATGAATGGTGTTCGAACG
TGCGGTGATTATATGTTCAGTGGTCACACTGCAACACTTACCTTGTTAAA
TTTCTTCGTAACTGAATGTGATATCAAGCGTATTACCAGTGCAGTTGATC
GCTTACGTGCATTTAACAATGCGGCTATGTACAATGACTTTGCCGATGGG
TTTAGTCCAAAACCGGGTGGTGGTAGTGGCCGCAAGAAGCGGCGTAAACA
ACGCATTATGTCGTTTTCCGATGATGAAGATAACGAGTCTTTATTTACAA
CTGATAATCCTGACGGAATCGATCCGCGCCGTGTGAACCCTTTGGAAGAG
GAAATCAAGAACGCTCTTGTGTCAGAATACGTTCGCACGGCTATCAGTGC
TGTGTACGCCTTTTCTGTATTCTTGCTTGCCGCGTTCGTGTTAGTAGTAG
TCCACGATAGGTTACCAGATACCAGCAACTATCCACCACTTCCTGATGTC
GTCCTCGAAACCATACCAGTCATACCAAGTGCCTTTTATTGGTGTGAAAT
ATGCGGTGGCATTTTGATGAGTTTTTGGTTTTTGATTATCATCTTTCACA
AACATCGATTGGTTGTTTTTAGAAGGAGTTGTGCGATTTCGGGCACGATT
TTCTTGTTGCGTTGTTTCACTATGTATGTGACTTCGATGAGTGTTCCAGG
CAAACATTTGCAATGCTCGCCTACGGTAACATACTTAAAAAAGACAAGGA
ATAAAACTAGATTCAAAACTCAGCGGAAAATGAGTACATCCAATAAATCT
ATCCATGAATGGACAGTATCAGATGTTGCTGAATGGCTGGATGAGAATAA
TTTATCCAAACATAAAGCATTATTATGTGATGAACACCAGATTGATGGCA
GTGCCTTGATATCGTTGAACGAAAGTGATTTACGAAAACCTCCTGTGGAA
ATGACCGTGCTAGATACACCGAGAAAATGGTATGTTCTCCATACCTTCTG
TTGGTTATTAAACGCCTTTGGTGTCTTCTTCATCCTAGCCGCACACGAAC
ATTATTCCATAGATGTCTTGATTGCCTTCTACATTTCGTCTCGATTGTTC
TTATATTATCACACGTTAGCCAGTACCGTACAATTTCGTACAAGTGATCA
GAAGAGAAGACGTATTTGGTTTCCTATGTTTTGGTTTTTCGAGTACGGAT
GCAGGCTAGTTATTCCAAATGAATTCGAATGGCCGTTCACTTATCGGAAA
CTACAAGACGTTTTCCCGTCTTTGAGAAACGACAGTAGTAGTGGCGCTGG
TACGCCGGTAAAAAGTAGTGGTGGCGCTGGTACGCCGGCTAAAAGTGGTA
GCACGCCGGGAAAAAAGAAGAAGAGATGAAAATATGCGACATTCTACAAT
CGTGCGTTTAGAGCATTTGAGATTGTTTCTGGGGGAGGTATGGCTATGAA
TGGTGTTCGAACGTGCGGTGATTATATGTTCAGTGGTCACACTGCAACAC
TTACCTTGTTAAATTTCTTCGTAACTGAATGTGATATCAAGCGTATTACC
AGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGGCTATGTACAATGA
CTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGTAGTGGCCGCAAGA
AGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGATGAAGATAACGAG
TCTTTATTTACAACTGATAATCCTGACGGAATCGATCCGCGCCGTGTGAA
CCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCAGAATACGTTCGCA
CGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTTGCTTGCCGCGTTC
GTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCAGCAACTATCCACC
ACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATACCAAGTGCCTTTT
ATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTTTTGGTTTTTGATT
ATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAAGGAGTTGTGCGAT
TTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATGTATGTGACTTCGA
TGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTACGGTAACATACTTA
AAAAAGACAAGGAATAAAACTAGATTCAAAACTCAGCGGAAAATGAGTAC
ATCCAATAAATCTATCCATGAATGGACAGTATCAGATGTTGCTGAATGGC
TGGATGAGAATAATTTATCCAAACATAAAGCATTATTATGTGATGAACAC
CAGATTGATGGCAGTGCCTTGATATCGTTGAACGAAAGTGATTTACGAAA
ACCTCCTGTGGAAATGACCGTGCTAGATACACCGAGAAAATGGTATGTTC
TCCATACCTTCTGTTGGTTATTAAACGCCTTTGGTGTCTTCTTCATCCTA
GCCGCACACGAACATTATTCCATAGATGTCTTGATTGCCTTCTACATTTC
GTCTCGATTGTTCTTATATTATCACACGTTAGCCAGTACCGTACAATTTC
GTACAAGTGATCAGAAGAGAAGACGTATTTGGTTTCCTATGTTTTGGTTT
TTCGAGTACGGATGCAGGCTAGTTATTCCAAATGAATTCGAATGGCCGTT
CACTTATCGGAAACTACAAGACGTTTTCCCGTCTTTGAGAAACGACAGTA
GTAGTGGCGCTGGTACGCCGGTAAAAAGTAGTGGTGGCGCTGGTACGCCG
GCTAAAAGTGGTAGCACGCCGGGAAAAAAGAAGAAGAGATGAAAATATGC
GACATTCTACAATCGTGCGTTTAGAGCATTTGAGATTGTTTCTGGGGGAG
GTATGGCTATGAATGGTGTTCGAACGTGCGGTGATTATATGTTCAGTGGT
CACACTGCAACACTTACCTTGTTAAATTTCTTCGTAACTGAATGTGATAT
CAAGCGTATTACCAGTGCAGTTGATCGCTTACGTGCATTTAACAATGCGG
CTATGTACAATGACTTTGCCGATGGGTTTAGTCCAAAACCGGGTGGTGGT
AGTGGCCGCAAGAAGCGGCGTAAACAACGCATTATGTCGTTTTCCGATGA
TGAAGATAACGAGTCTTTATTTACAACTGATAATCCTGACGGAATCGATC
CGCGCCGTGTGAACCCTTTGGAAGAGGAAATCAAGAACGCTCTTGTGTCA
GAATACGTTCGCACGGCTATCAGTGCTGTGTACGCCTTTTCTGTATTCTT
GCTTGCCGCGTTCGTGTTAGTAGTAGTCCACGATAGGTTACCAGATACCA
GCAACTATCCACCACTTCCTGATGTCGTCCTCGAAACCATACCAGTCATA
CCAAGTGCCTTTTATTGGTGTGAAATATGCGGTGGCATTTTGATGAGTTT
TTGGTTTTTGATTATCATCTTTCACAAACATCGATTGGTTGTTTTTAGAA
GGAGTTGTGCGATTTCGGGCACGATTTTCTTGTTGCGTTGTTTCACTATG
TATGTGACTTCGATGAGTGTTCCAGGCAAACATTTGCAATGCTCGCCTAC
GGTAACATACTTAAAAAAGACAAGGAATAAAACTAGATTCAAAACTCAGC
GGAAAATGAGTACATCCAATAAATCTATCCATGAATGGACAGTATCAGAT
GTTGCTGAATGGCTGGATGAGAATAATTTATCCAAACATAAAGCATTATT
ATGTGATGAACACCAGATTGATGGCAGTGCCTTGATATCGTTGAACGAAA
GTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCTAGATACACCGAGA
AAATGGTATGTTCTCCATACCTTCTGTTGGTTATTAAACGCCTTTGGTGT
CTTCTTCATCCTAGCCGCACACGAACATTATTCCATAGATGTCTTGATTG
CCTTCTACATTTCGTCTCGATTGTTCTTATATTATCACACGTTAGCCAGT
ACCGTACAATTTCGTACAAGTGATCAGAAGAGAAGACGTATTTGGTTTCC
TATGTTTTGGTTTTTCGAGTACGGATGCAGGCTAGTTATTCCAAATGAAT
TCGAATGGCCGTTCACTTATCGGAAACTACAAGACGTTTTCCCGTCTTTG
AGAAACGACAGTAGTAGTGGCGCTGGTACGCCGGTAAAAAGTAGTGGTGG
CGCTGGTACGCCGGCTAAAAGTGGTAGCACGCCGGGAAAAAAGAAGAAGA
GATGAAAATATGCGACATTCTACAATCGTGCGTTTAGAGCATTTGAGATT
GTTTCTGGGGGAGGTATGGCTATGAATGGTGTTCGAACGTGCGGTGATTA
TATGTTCAGTGGTCACACTGCAACACTTACCTTGTTAAATTTCTTCGTAA
CTGAATGTGATATCAAGCGTATTACCAGTGCAGTTGATCGCTTACGTGCA
TTTAACAATGCGGCTATGTACAATGACTTTGCCGATGGGTTTAGTCCAAA
ACCGGGTGGTGGTAGTGGCCGCAAGAAGCGGCGTAAACAACGCATTATGT
CGTTTTCCGATGATGAAGATAACGAGTCTTTATTTACAACTGATAATCCT
GACGGAATCGATCCGCGCCGTGTGAACCCTTTGGAAGAGGAAATCAAGAA
CGCTCTTGTGTCAGAATACGTTCGCACGGCTATCAGTGCTGTGTACGCCT
TTTCTGTATTCTTGCTTGCCGCGTTCGTGTTAGTAGTAGTCCACGATAGG
TTACCAGATACCAGCAACTATCCACCACTTCCTGATGTCGTCCTCGAAAC
CATACCAGTCATACCAAGTGCCTTTTATTGGTGTGAAATATGCGGTGGCA
TTTTGATGAGTTTTTGGTTTTTGATTATCATCTTTCACAAACATCGATTG
GTTGTTTTTAGAAGGAGTTGTGCGATTTCGGGCACGATTTTCTTGTTGCG
TTGTTTCACTATGTATGTGACTTCGATGAGTGTTCCAGGCAAACATTTGC
AATGCTCGCCTACGGTAACATACTTAAAAAAGACAAGGAATAAAACTAGA
TTCAAAACTCAGCGGAAAATGAGTACATCCAATAAATCTATCCATGAATG
GACAGTATCAGATGTTGCTGAATGGCTGGATGAGAATAATTTATCCAAAC
ATAAAGCATTATTATGTGATGAACACCAGATTGATGGCAGTGCCTTGATA
TCGTTGAACGAAAGTGATTTACGAAAACCTCCTGTGGAAATGACCGTGCT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012891-exon-sc0000157-1575043694:26246..26485 | TCONS_00012891-exon-sc0000157-1575043694:26246..26485 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1575043694:22039..22646 | TCONS_00012891-exon-sc0000157-1575043694:22039..22646 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1575043694:21624..21774 | TCONS_00012891-exon-sc0000157-1575043694:21624..21774 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1575043694:18323..20314 | TCONS_00012891-exon-sc0000157-1575043694:18323..20314 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1510915933:26246..26485 | TCONS_00012891-exon-sc0000157-1510915933:26246..26485 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1510915933:22039..22646 | TCONS_00012891-exon-sc0000157-1510915933:22039..22646 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1510915933:21624..21774 | TCONS_00012891-exon-sc0000157-1510915933:21624..21774 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1510915933:18323..20314 | TCONS_00012891-exon-sc0000157-1510915933:18323..20314 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1491911889:26246..26485 | TCONS_00012891-exon-sc0000157-1491911889:26246..26485 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1491911889:22039..22646 | TCONS_00012891-exon-sc0000157-1491911889:22039..22646 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1491911889:21624..21774 | TCONS_00012891-exon-sc0000157-1491911889:21624..21774 | Clytia hemisphaerica | exon |
| TCONS_00012891-exon-sc0000157-1491911889:18323..20314 | TCONS_00012891-exon-sc0000157-1491911889:18323..20314 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:18323..26485 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00012891 vs. Swiss-Prot (Human)
Match: SAMD8 (Sphingomyelin synthase-related protein 1 OS=Homo sapiens GN=SAMD8 PE=1 SV=2) HSP 1 Score: 365.925 bits (938), Expect = 9.073e-116 Identity = 192/409 (46.94%), Postives = 262/409 (64.06%), Query Frame = 3
Query: 57 MSTSNK-SIHEWTVSDVAEWLDENNLSKHKALLCDEHQIDGSALISLNESDLRKPPVEMTVLGDIKRITSAVDRLRAFNNAAMYN-DFADGFXXXXXXXXXXXXXXXXXIMSFSDDEDNESLFTTDNPDGIDPRRVNPLEEEIKNALVSEYVRTAISXXXXXXXXXXXXXXXXXXHDRLPDTSNYPPLPDVVLETIPVIPSAFYWCEICGGILMSFWFLIIIFHKHRLVVFRRSCAISGTIFLLRCFTMYVTSMSVPGKHLQCSPTKYATFYNRAFRAFEIVSGGGMAMNGVRTCGDYMFSGHTATLTLLNFFVTEYTPRKWYVLHTFCWLLNAFGVFFILAAHEHYSIDVLIAFYISSRLFLYYHTLASTVQFRTSDQKRRRIWFPMFWFFEYGCRLVIPNEFEWPFT 1277
M+ N+ I WT VA WL + ++ +LC++H++DG L++L E DLR PP+E+ VLGDIKR+ +V +L+ + + + + + + D + T N D + +N + L EY +T +S +Y F VF +F++V+VH+R+PD YPPLPD+ L+++P IP AF E+CG IL W L+++ HKHR ++ RR C++ GT+FLLRCFTM+VTS+SVPG+HLQC+ Y + + + RAF I SG GM + GV TCGDYMFSGHT LT+LNFFVTEYTPR W LHT W+LN FG+FFILAAHEHYSIDV IAFYI++RLFLYYHTLA+T ++ S +R RIWFPMF FFE +PNE+ WPF+
Sbjct: 1 MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIKVLGDIKRLMLSVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCDGPITDLNSD--QYQYMNGKNKHSVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPRIPWAFAMTEVCGMILCYIWLLVLLLHKHRSILLRRLCSLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIWSGFGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLFLYYHTLANTRAYQQS--RRARIWFPMFSFFECNVNGTVPNEYCWPFS 405
The following BLAST results are available for this feature:
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