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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012945 ID=TCONS_00012945|Name=TCONS_00012945|organism=Clytia hemisphaerica|type=transcript|length=2308bp
TNAGAAAGAGAAGAATCTTCAACCAACACTCTCCACCATAATGGAGTTCA
CGATGAAGagcTGGAACAGAAGTTTGAATCTGAAAGACTATCATACCAAG
AAAAGATCGAAAATCTCGAAAACGAAATAGCAGAACTACGGAGCAATCAA
GAAACTAATGGCTCTCGTAAACAAGCTGAAAGCACAAGAAATGGAAGCGG
TGACGCCCGCGCGGCTGATTTTGAACGTTCGTTCGTCGATGTTTCGTCCG
AGGCGGATGCTATACAGGAAGACGCTCGACATACAGGTCTCTATGTTAAT
AACAACGAAAAGTGCGACGATTTTGAAGTCATTGATGATGGCTCACAAGC
AGGTGGAATCAGGAACTTTGAAGATAAATCGTTTGAAAAATCTGGTCGGT
CCTCTCTTTTATCATCAATGCGGACGGACTTAGTATCGGACAGTGTTGAG
TCAGAACTACCCCTTGAAATCAGTGTTGACGCGTCGGCAGGCGCCATTAC
CAAACCCAATAAAGACGATTACGATATCGTCCAAATCGACGAATCGGGGC
GCAAACAATCCTCAACCCGTCTAGATGTTTCTAAACTAGCTGCTAGCACG
ATCGACGATCGGCAACCATCGCCGACTCCGGAGTCTAATATAAACATTAA
CAAGTATCTGTTTTCCGATAATGATGATGATAACGATAATGAACCTGAGA
CGGCTGGCACATTTAATATAGACATGTATTTCGCAAATGAGGAACATACC
ACAGACCCTACCATAGACCAAGAGAATGATGATCCAGGGGATACTACGCT
ACCAGAAATTGTATCACCCCCTCTCCCACAACAAACAGAAATAGAGAAAA
GCGAGGACTCGTCTAGCCCCTTTTTAGAAGTGAAATCACAAGCTACGGCT
ATGAATGTGGTTGTCTGCAGTGAGGCTAATGATGATACAGAACTTAATCG
CAATGATGAGCCGACAGATTTCCATGCCAGTTCTCAGGACGCTGAAGATA
GTATTGCGAATAGCCAAGAAGACTTCAATGAAGCTTTTGTGTCGAACGAG
GAACATGACTTAAGTACCGGTAACTTGGAAATCGATTCACCGGCTGTTGC
CCAGCAACAACATCAGTACCTTCAAGATGATAGTACTGTTGTTGATTCTC
AAAAGAACTTATTGTCGACTACCGATCCAGATATTAGGAGAAGCGTCGAG
GATCTTTACGAGCGGATTTTATCGGAGGATTCATCATCGCGGAGTGGAAA
TGATGTTTTTAGCGATTCTTCTGAGGGTCTACCGGCTGGAGCTACTTTTA
GTGAACCAATCGGTATTACGGGCTCACAGAGTACAGAGGAGGGGGGAGAG
CGTGTTATTAGCCCCGTTGATGGTACTAAGCGCAAGGAAGGCTGGCTTGT
CCGCGTGGAAAGCTTTAGCACACCGGCAACATGTACTCCACGTATCAAAG
TTATCGGCGAGAACAATGAGACCAATGAGAAAGTTGACGAAAACAATTCG
ACAGATACAGTTAAAGTTCCCGAAGGTGAGGATCCGAATGAAGGTGGCGT
CGACTCGCCAGCGCCGGTCCCTAAGGAACGTAAAAAGAAGAAcaagaaca
aaaagaaaaagaaacgaaAGTCAGTTGAATTGGTAGAAGATAATGCAGCT
GGTGATACGGCCGAAGATTCGCCGTTCGAATCGCAGAAAACGGATACGGA
AAGTCCAGCCGTGTCTCCAACAAAACGTGTCGATCATAGCGACATTCCGA
AACAATTTTTAGACGCTTCTACGACCCTGGGTGCGGGAGATTTGAGTTGT
TCAGACGTTTCTGATGTTGAACAAGAGACTTTAGAAGATGGAAGTACGAT
CGATAAGAAACGTGGTggttctaaaaagaaaaacaaagagagCTGTAAAA
CTCAGTAGTTGAATAAAGCCGTATTTTTGTctgtttaaagtttgatattt
ttgaatggAAGTTTGACTTTcctagaaagaaaaaacataacccGAAGGCC
ATGGGTGATTTtacttttagaaaaatcttGTCGTGTGTACTTGGTCTTTT
CGGCGAAGAAAGGTCAtgtaaaatttttcaataatatcGAGACTGGTAGA
CTCAACttcttcgattttttttctggaagggTCCGATATTCTCAACTTCG
AATACTTTACACGTGCAATCatgttatatatattttttggatttggttca
tttttttactgttttgttgtattcgttttttttttgtttttttttggtta
cTTGAGTGAtttcaaatcaagaaaattttaaaagcttcATAGACCACTCA
AAAAGTAC Run BLAST on NCBI transcript from alignment at sc0000161:53260..57464+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012945 ID=TCONS_00012945|Name=TCONS_00012945|organism=Clytia hemisphaerica|type=transcript|length=4205bp|location=Sequence derived from alignment at sc0000161:53260..57464+ (Clytia hemisphaerica)
TNAGAAAGAGAAGAATCTTCAACCAACACTCTCCACCATAATGGAGTTCA
CGATGAAGGTTAGGAATGATGGATCTTTTCATGAATTTAGTCACAAGCAA
Cggttacctcgttttcaaaatattgctatgataattgattcccagaggag
ttgataagaattttactttatttaacaattaacacttgaagaacgaggca
gtcgttgcactcaaaataatttgtgaAAAAGCCTTGAGAGGGAAAAATAT
CTTTCTCTTTTGAGGTGTTACTTCTAGAATAGATCGATTACTGATTGATA
TATTTTGGCTTGGTATCTTCGTAGCACTTAATAATTTGAGATTCAGGAGA
TAAGAGCTTAAAGCAAATATCTTCTTTTGAATCTGGTCGAAGTTACGAAA
agctattattatttttttaatttcagagcTGGAACAGAAGTTTGAATCTG
AAAGACTATCATACCAAGAAAAGGTAATCTAATTGTGACCTTAGTATATG
ACAATTTAATCACCGCGTTCAAAAGCTCATTAaatattcatccaaaaaga
caAAATCGGTCCCAATCATACTAAAGTTTATACAAGCTCTGCATTCTTTC
TTGCAGATCGAAAATCTCGAAAACGAAATAGCAGAACTACGGAGCAATCA
AGAAACTAATGGCTCTCGTAAACAAGCTGAAAGCACAAGAAGTAAGTTTA
TTGTGGTTTCTTATATTAATAGAATATCCTAGAGGTACACATAACCTGCG
TTGGCTCGTTATGATACAAAATAACGTGAACCAGTCAAGTGATTCTTATC
CATCATGGCCGGACTGCCGCAATTGCACCAATCAAACTTTAAAACGTGGG
GAATCTGAGTTCGTGTCTTTCAGGAAGGATTAGCGTCAAAATTTCTGTAG
TCGTTACATTGGCACTGTCATAGACGAAGAAATTTTACGCGttttccttg
taaattcatcACCAGTCCCCCCCCCTCAAAAACTGACCGGGTCGTTAAGG
GATAATGCGTGTATCAGCGTCTACTATGGATCCTCTTTGTGTATATATTT
TATTCTTGTCACGGATTTGTCGATGTTTAATTTCCCTCTCAAAAAGTTAC
AAATGTAAATACAAAAGGTCTAATAGAGGGATACTTTAAAGACATTAGAG
ACAGTTTTCTGGCGTGAATCAATCATTTAAATGACGGATATTTTTCTGCC
CAATTTAAATTTGTAGTTTATATTTTTGAGTAGTATTTTTCATAAACAca
cttcttttatttttgattgaacTGCACATATCGAGAAATCGACCGATCGA
AATGCATCAATTTGCGTTTCTGTATCGACGTTTTTCTCGTTAGTTCAAAG
CACACTCTACTCACACACTTACTATCTTATACTATGCACAGCAAACCCTG
TTTATTTCAAGCCTTTCAGTGAGGCCACGCTCCTTTCCCCTCTTTTACCT
TCACACGCATTCAAATCTTATTTGGTATAATAAGATAACACTGAATGAAA
GAACGAATGAATGAATTGATTTTGTTACCTTTTATCcgcaaaaagtctta
aaattctaaaaaaaagcaAATAGAAAACATGCCATAGTCGCTACACTTAA
ACCTAAGAGCTAACAAATTTGTGATGGGTAGATATTTAGAGGaaaacttt
cttctttttttcgcgACAGAATTGTCAAGTTTTATTCaaagtgaaaactt
tttaagaATGAGCTTCGCAAGATAGATCAACAAGGTTTATAAGCGTTAAA
ATATTTAAAGCAAATTTCACTGCATGGAGACATGTCACGAATAGATGAAA
TATTCTATATTCCCATTATAGTTGTTGCACTAAAAGCTTTCGATCTAAAT
AGGGTTTGCAAAGAAAAGTCTCTCTGCTTCTTTGAAAGAAGAGGCGAGGA
GTGTTTTAAACCCcaaaaaataagacttttgattTGTTTGGGACATCATT
TTTTCGTGCGGAtaacaaaaacatcaaatttcattCTCGTTCATTCAATT
CCATTCAACTCTGTTTTAATGTCCCAATATATCTCAGTCTTATTTTTCGT
TATTATTTAAAACACTCCTCCGTCTCTTTTCTTTCAGATGGAAGCGGTGA
CGCCCGCGCGGCTGATTTTGAACGTTCGTTCGTCGATGTTTCGTCCGAGG
CGGATGCTATACAGGAAGACGCTCGACATACAGGTCTCTATGTTAATAAC
AACGAAAAGTGCGACGATTTTGAAGTCATTGATGATGGCTCACAAGCAGG
TGGAATCAGGAACTTTGAAGATAAATCGTTTGAAAAATCTGGTCGGTCCT
CTCTTTTATCATCAATGCGGACGGACTTAGTATCGGACAGTGTTGAGTCA
GAACTACCCCTTGAAATCAGTGTTGACGCGTCGGCAGGCGCCATTACCAA
ACCCAATAAAGACGATTACGATATCGTCCAAATCGACGAATCGGGGCGCA
AACAATCCTCAACCCGTCTAGATGTTTCTAAACTAGCTGCTAGCACGATC
GACGATCGGCAACCATCGCCGACTCCGGAGTCTAATATAAACATTAACAA
GTATCTGTTTTCCGATAATGATGATGATAACGATAATGAACCTGAGACGG
CTGGCACATTTAATATAGACATGTATTTCGCAAATGAGGAACATACCACA
GACCCTACCATAGACCAAGAGAATGATGATCCAGGGGATACTACGCTACC
AGAAATTGTATCACCCCCTCTCCCACAACAAACAGAAATAGAGAAAAGCG
AGGACTCGTCTAGCCCCTTTTTAGAAGTGAAATCACAAGCTACGGCTATG
AATGTGGTTGTCTGCAGTGAGGCTAATGATGATACAGAACTTAATCGCAA
TGATGAGCCGACAGATTTCCATGCCAGTTCTCAGGACGCTGAAGATAGTA
TTGCGAATAGCCAAGAAGACTTCAATGAAGCTTTTGTGTCGAACGAGGAA
CATGACTTAAGTACCGGTAACTTGGAAATCGATTCACCGGCTGTTGCCCA
GCAACAACATCAGTACCTTCAAGATGATAGTACTGTTGTTGATTCTCAAA
AGAACTTATTGTCGACTACCGATCCAGATATTAGGAGAAGCGTCGAGGAT
CTTTACGAGCGGATTTTATCGGAGGATTCATCATCGCGGAGTGGAAATGA
TGTTTTTAGCGATTCTTCTGAGGGTCTACCGGCTGGAGCTACTTTTAGTG
AACCAATCGGTATTACGGGCTCACAGAGTACAGAGGAGGGGGGAGAGCGT
GTTATTAGCCCCGTTGATGGTACTAAGCGCAAGGAAGGCTGGCTTGTCCG
CGTGGAAAGCTTTAGCACACCGGCAACATGTACTCCACGTATCAAAGTTA
TCGGCGAGAACAATGAGACCAATGAGAAAGTTGACGAAAACAATTCGACA
GATACAGTTAAAGTTCCCGAAGGTGAGGATCCGAATGAAGGTGGCGTCGA
CTCGCCAGCGCCGGTCCCTAAGGAACGTAAAAAGAAGAAcaagaacaaaa
agaaaaagaaacgaaAGTCAGTTGAATTGGTAGAAGATAATGCAGCTGGT
GATACGGCCGAAGATTCGCCGTTCGAATCGCAGAAAACGGATACGGAAAG
TCCAGCCGTGTCTCCAACAAAACGTGTCGATCATAGCGACATTCCGAAAC
AATTTTTAGACGCTTCTACGACCCTGGGTGCGGGAGATTTGAGTTGTTCA
GACGTTTCTGATGTTGAACAAGAGACTTTAGAAGATGGAAGTACGATCGA
TAAGAAACGTGGTggttctaaaaagaaaaacaaagagagCTGTAAAACTC
AGTAGTTGAATAAAGCCGTATTTTTGTctgtttaaagtttgatatttttg
aatggAAGTTTGACTTTcctagaaagaaaaaacataacccGAAGGCCATG
GGTGATTTtacttttagaaaaatcttGTCGTGTGTACTTGGTCTTTTCGG
CGAAGAAAGGTCAtgtaaaatttttcaataatatcGAGACTGGTAGACTC
AACttcttcgattttttttctggaagggTCCGATATTCTCAACTTCGAAT
ACTTTACACGTGCAATCatgttatatatattttttggatttggttcattt
ttttactgttttgttgtattcgttttttttttgtttttttttggttacTT
GAGTGAtttcaaatcaagaaaattttaaaagcttcATAGACCACTCAAAA
AGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012945-exon-sc0000161-1491911889:53260..53317 | TCONS_00012945-exon-sc0000161-1491911889:53260..53317 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1510915933:53260..53317 | TCONS_00012945-exon-sc0000161-1510915933:53260..53317 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1575043694:53260..53317 | TCONS_00012945-exon-sc0000161-1575043694:53260..53317 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1491911889:53686..53732 | TCONS_00012945-exon-sc0000161-1491911889:53686..53732 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1510915933:53686..53732 | TCONS_00012945-exon-sc0000161-1510915933:53686..53732 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1575043694:53686..53732 | TCONS_00012945-exon-sc0000161-1575043694:53686..53732 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1491911889:53866..53950 | TCONS_00012945-exon-sc0000161-1491911889:53866..53950 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1510915933:53866..53950 | TCONS_00012945-exon-sc0000161-1510915933:53866..53950 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1575043694:53866..53950 | TCONS_00012945-exon-sc0000161-1575043694:53866..53950 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1491911889:55347..57464 | TCONS_00012945-exon-sc0000161-1491911889:55347..57464 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1510915933:55347..57464 | TCONS_00012945-exon-sc0000161-1510915933:55347..57464 | Clytia hemisphaerica | exon |
| TCONS_00012945-exon-sc0000161-1575043694:55347..57464 | TCONS_00012945-exon-sc0000161-1575043694:55347..57464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:53260..57464 + |
Blast
The following BLAST results are available for this feature:
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