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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012956 ID=TCONS_00012956|Name=TCONS_00012956|organism=Clytia hemisphaerica|type=transcript|length=2785bpRun BLAST on NCBI protein sequence of TCONS_00012956-protein >TCONS_00012956-protein ID=TCONS_00012956-protein|Name=TCONS_00012956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=576bp MDGASILAKSLADQGVEYMFGIVGIPVMEVAIAAQQIGIKYIGMRNEQSARun BLAST on NCBI transcript from alignment at sc0000161:173672..186080+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012956 ID=TCONS_00012956|Name=TCONS_00012956|organism=Clytia hemisphaerica|type=transcript|length=12409bp|location=Sequence derived from alignment at sc0000161:173672..186080+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000161:173672..186080+ >TCONS_00012956 ID=TCONS_00012956|Name=TCONS_00012956|organism=Clytia hemisphaerica|type=CDS|length=27696bp|location=Sequence derived from alignment at sc0000161:173672..186080+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012956 vs. Swiss-Prot (Human)
Match: HACL1 (2-hydroxyacyl-CoA lyase 1 OS=Homo sapiens GN=HACL1 PE=1 SV=2) HSP 1 Score: 635.18 bits (1637), Expect = 0.000e+0 Identity = 307/577 (53.21%), Postives = 413/577 (71.58%), Query Frame = 1
Query: 88 MDGASILAKSLADQGVEYMFGIVGIPVMEVAIAAQQIGIKYIGMRNEQSASYAASAVGYLTGRPAVCLVVSGPGLIHALAGMANAKENCWPMMVVGGSSDTNQEQMGAFQEIPQVEAARQYCKLSARPNAVEDIPFYVEKAVRHSIQGRPGVVYLDLPGDLIRAVSQDEERIRWTLRSPEPLISVCPPSQIHIALDTLMSAKRPLLVIGKGAAYGRSEDSLRRFIDQTGLPFLPTPMGKGVVSDNHPQCVSAARSKALLRADVIFLVCARLNWILHFGLPPRFHQNVQFIQLDIAPEEIGNNAPSTVGLFGNVNAIVNQMCQGFEEKFSGKKFERSQPWWKELESKVEDNKQKTQMMIESSGIPMNFYHMYDEICKDLPGGCIIVNEGANTMDIGRTMITHNLPRKRLDAGSFGTMGVGSGFAIAAALVEMNQALKEDRPPCR-VVCVQGDSAFGFGGMELETAARYHLPIIFIIANNNGIYNGLDRESYDTVTTEAEQTXXXXXXXXXXXXXXICYEKIMHAFGCRGVEVIQPSELHLSLKEALADTERPSLLHVRIESTSGRKQQEFDWLTKSKL 1815
+ GA ++A++L Q VEY+FGIVGIPV E+AIAAQQ+GIKYIGMRNEQ+A YAASA+GYLT RP VCLVVSGPGLIHAL GMANA NCWP++V+GGSS+ NQE MGAFQE PQVEA R Y K SARP+++E IPF +EKAVR SI GRPG Y+D+P D + + + I++ R P IS+ S + A + +AK+PLL+IGKGAAY +E+S+++ ++Q LPFLPTPMGKGVV DNHP CV AARS+AL ADVI L ARLNWILHFGLPPR+ +V+FIQ+DI EE+GNN V L GN++A+ Q+ + ++ + ++ WWK L K++ N+ ++ + +PMN+Y ++ + + LP C +V+EGANTMDIGRT++ + LPR RLDAG+FGTMGVG GFAIAAA+V +DR P + ++CV+GDSAFGF GME+ET RY+LPII ++ NNNGIY G D +++ + + T++ + + + YE++M AFG +G V P EL SL+++LADT +PSL+++ IE + RK Q+F WLT+S +
Sbjct: 14 VSGAKVIAQALKTQDVEYIFGIVGIPVTEIAIAAQQLGIKYIGMRNEQAACYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNCWPLLVIGGSSERNQETMGAFQEFPQVEACRLYTKFSARPSSIEAIPFVIEKAVRSSIYGRPGACYVDIPADFVN-LQVNVNSIKYMERCMSPPISMAETSAVCTAASVIRNAKQPLLIIGKGAAYAHAEESIKKLVEQYKLPFLPTPMGKGVVPDNHPYCVGAARSRALQFADVIVLFGARLNWILHFGLPPRYQPDVKFIQVDICAEELGNNVKPAVTLLGNIHAVTKQLLEELDK--TPWQYPPESKWWKTLREKMKSNEAASKELASKKSLPMNYYTVFYHVQEQLPRDCFVVSEGANTMDIGRTVLQNYLPRHRLDAGTFGTMGVGLGFAIAAAVV------AKDRSPGQWIICVEGDSAFGFSGMEVETICRYNLPIILLVVNNNGIYQGFDTDTWKEMLKFQDATAVVPPMCLLPNSH---YEQVMTAFGGKGYFVQTPEELQKSLRQSLADTTKPSLINIMIEPQATRKAQDFHWLTRSNM 578 The following BLAST results are available for this feature:
BLAST of TCONS_00012956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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