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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012990 ID=TCONS_00012990|Name=TCONS_00012990|organism=Clytia hemisphaerica|type=transcript|length=2081bp
caccaacactttccaacttttaattgcactgttcgaaatagataacataa
cccccgtttttagtaataagttggagatacgatatttcacagaaaagtgc
taccaaggggtatttcgggttcCATATCTttcgaaggacttttctgttcg
ccttgaaatttaaaaaaattcttaacctaaggttgaactaccactggtgt
aaaaatgaacgttatagcataagtagaaaaaaagctcaatttttacaatc
gcaaatttaaccgctaaaaatcgcgaatttttcaaccaaaaatacactca
aatatagcgcttttgattctctgaaacaagcaaataaaaattccataatt
atatttgactatcaaaagttacaggcattcttgtttccactgccaattat
atctggacagactttagaagCTTCATTGAAGCATATAATAACTATATATT
CGAACTTCACACCTTCATAAAAACTAATAATTGTATCTCCGCTTTGAAAA
ATCTAGGAGGGTTCTTACAGTAAAAATGATATAACCTATTCATCTCAAAT
TCAAGCACCAAATAAATAAATCCcacaaaatcattaaaaagcgttttcat
ttttaaaatctaCTTGCATTGTTCTTTGTCAGACAATTCTACCATTCCAC
TAACAGCTGATTGAAAACCAGCATTAAATTCCAAATTGACTTCATTCGTT
TCATAATTAGCTCTTCGATCACTGAATCGATCAGTTTTACTGGGGCCACC
AACCAATGCACCGTACAGAATCTGAGGATTTGGTTGGTTTGTAAAGAGCT
GATCTAGGCTGCATGAACCGGTTGATGGACAGGAGCTGGATTTATGGAAC
GGTTGCTGAGGTGGGTTCTCACCGAAGCCCACAACAAAGCTACGACCAGT
ATCACCAAGGATATAGTTGATCTGACTGGTCGCGAATTGGTTAAAGAATT
GAATATCCGCCCCTTCAATTTTGGCAGTAATAAGCGATAGGAAAGCCAGA
TTTGATGCATATCTTAATGAGCCATATTTATCGACATAAAGAAGACCTTT
TGGTGTATATTCCGCATTACTCAAATACGATTTGAAGTCTTCAAAGAATG
ATTTGTCTGGATTCAAATTCAACTGCAATGCAAGGATCTTGACAGCTGAC
CATTTATCATCCCAGGAGAATACAGTTGGCTTATTTGGTgcattttcaac
aaatttttgatAGTCGTCCTTATAGACTGGATCTCCAGTAGTCTTGTATA
ACCAAAGTGCTGCCCAGGCTAGCTCATCTTCAAATCCACTACTTATGTAA
ACTGTAGCGTCGGTTATTGATTTATGATATTCGCCTTTAAATTCCTTAGC
AAATGAATATAATTCTTCAGCATGTTGTAGACATTCGTCAGCGTATATAG
TATTACCATTGTTAAGAAACAAAATGGATCCTACAGCCAGAGCGGCAGCC
GTTTCCGCAGCAAGATCAGATCCAGGAAGTTGCTCATTGATCTCATAAAC
tggtcttgcaacattcatttCCTCAGGACGTCCCCAGAATCCATTATCAA
GGTCCTTATCGCCGACTTGTCCAAAGAATCGATTAGCAGAAGGGTGACAT
TTGATGAAGTAATCAGTTCCCCATTTGATGGCTTTCAATCCATATTCATA
TTGTCCTGATGAGGTATAGCCTTTCTTGAATTCCAACATCCCCCATGCAA
GATTGGTGACAGTTGCAGCCATTGGAAAACCAAATTTGACATAGCTTGCA
GAGTCAAAATAACCACCACTTAGATCAAAACCAACCTGGGATCCATCATT
CAAGGTTGAGTCCTTTCTCCATGTGACACGCTGGTCTATTGGGAGTTTCC
CTGATCTTTGAGCTTCGTAGAAAAGTAAGGATTTTTGTAACACATCACCA
TAGTCGTATAGACATAATTTAGATTGCGCTTGAGTTGTCGTTGTAGTGGT
TGGGGTGGACGTTGTCGTAGTAGGGgttgttgttgtcgttgttgtcgtAG
TTGGTGTGGTCGTAGTCGTAATAGGAGTGGTAGTTGTTGTAGttggggtg
gtcgttgtcgtaataggagtggtcgttgtcg Run BLAST on NCBI transcript from alignment at sc0000161:397992..400276+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012990 ID=TCONS_00012990|Name=TCONS_00012990|organism=Clytia hemisphaerica|type=transcript|length=2285bp|location=Sequence derived from alignment at sc0000161:397992..400276+ (Clytia hemisphaerica)
caccaacactttccaacttttaattgcactgttcgaaatagataacataa
cccccgtttttagtaataagttggagatacgatatttcacagaaaagtgc
taccaaggggtatttcgggttcCATATCTttcgaaggacttttctgttcg
ccttgaaatttaaaaaaattcttaacctaaggttgaactaccactggtgt
aaaaatgaacgttatagcataagtagaaaaaaagctcaatttttacaatc
gcaaatttaaccgctaaaaatcgcgaatttttcaaccaaaaatacactca
aatatagcgcttttgattctctgaaacaagcaaataaaaattccataatt
atatttgactatcaaaagttacaggcattcttgtttccactgccaattat
atctggacagactttagaagCTTCATTGAAGCATATAATAACTATATATT
CGAACTTCACACCTTCATAAAAACTAATAATTGTATCTCCGCTTTGAAAA
ATCTAGGAGGGTTCTTACAGTAAAAATGATATAACCTATTCATCTCAAAT
TCAAGCACCAAATAAATAAATCCcacaaaatcattaaaaagcgttttcat
ttttaaaatctaCTTGCATTGTTCTTTGTCAGACAATTCTACCATTCCAC
TAACAGCTGATTGAAAACCAGCATTAAATTCCAAATTGACTTCATTCGTT
TCATAATTAGCTCTTCGATCACTGAATCGATCAGTTTTACTGGGGCCACC
AACCAATGCACCGTACAGAATCTGAGGATTTGGTTGGTTTGTAAAGAGCT
GATCTAGGCTGCATGAACCGGTTGATGGACAGGAGCTGGATTTATGGAAC
GGTTGCTGAGGTGGGTTCTCACCGAAGCCCACAACAAAGCTACGACCAGT
ATCACCAAGGATATAGTTGATCTGACTGGTCGCGAATTGGTTAAAGAATT
GAATATCCGCCCCTTCAATTTTGGCAGTAATAAGCGATAGGAAAGCCAGA
TTTGATGCATATCTTAATGAGCCATATTTATCGACATAAAGAAGACCTTT
TGGTGTATATTCCGCATTACTCAAATACGATTTGAAGTCTTCAAAGAATG
ATTTGTCTGGATTCAAATTCAACTGCAATGCAAGGATCTTGACAGCTGAC
CATTTATCATCCCAGGAGAATACAGTTGGCTTATTTGGTgcattttcaac
aaatttttgatAGTCGTCCTTATAGACTGGATCTCCAGTAGTCTTGTATA
ACCAAAGTGCTGCCCAGGCTAGCTCATCTTCAAATCCACTACTTATGTAA
ACTGTAGCGTCGGTTATTGATTTATGATATTCGCCTTTAAATTCCTTAGC
AAATGAATATAATTCTTCAGCATGTTGTAGACATTCGTCAGCGTATATAG
TATTACCATTGTTAAGAAACAAAATGGATCCTACAGCCAGAGCGGCAGCC
GTTTCCGCAGCAAGATCAGATCCAGGAAGTTGCTCATTGATCTCATAAAC
tggtcttgcaacattcatttCCTCAGGACGTCCCCAGAATCCATTATCAA
GGTCCTTATCGCCGACTTGTCCAAAGAATCGATTAGCAGAAGGGTGACAT
TTGATGAAGTAATCAGTTCCCCATTTGATGGCTTTCAATCCATATTCATA
TTGTCCTGATGAGGTATAGCCTTTCTTGAATTCCAACATCCCCCATGCAA
GATTGGTGACAGTTGCAGCCATTGGAAAACCAAATTTGACATAGCTTGCA
GAGTCAAAATAACCACCACTTAGATCAAAACCAACCTGGGATCCATCATT
CAAGGTTGAGTCCTTTCTCCATGTGACACGCTGGTCTATTGGGAGTTTCC
CTGATCTTTGAGCTTCGTAGAAAAGTAAGGATTTTTGTAACACATCACCA
TAGTCGTATAGACATAATTTAGATTGCGCTTGAGTTGTCGTTGTAGTGGT
TGGGGTGGACGTTGTCGTAGTAGGGgttgttgttgtcgttgttgtcgtAG
TTGGTGTGGTCGTAGTCGTAATAGGAGTGGTAGTTGTTGTAGttggggtg
gtcgttgtcgtagtTGGGGTGGTTGTTGTCGTAGTAGGAGTGGTAGTTGT
TGTAGttggggtggtcgttgtcgtagttggggtggtcgttgtcgtagtaG
GAGTGGTTGTAGttggggtggtcgttgtcgtagttggggtggtcgttgtt
gtagtagGAGTGGTAGTTGTTGTAGttggggtggtcgttgtcgtagttga
ggtggtcgttgtcgtaataggagtggtcgttgtcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012990-exon-sc0000161-1491911889:397992..400038 | TCONS_00012990-exon-sc0000161-1491911889:397992..400038 | Clytia hemisphaerica | exon |
| TCONS_00012990-exon-sc0000161-1510915933:397992..400038 | TCONS_00012990-exon-sc0000161-1510915933:397992..400038 | Clytia hemisphaerica | exon |
| TCONS_00012990-exon-sc0000161-1575043694:397992..400038 | TCONS_00012990-exon-sc0000161-1575043694:397992..400038 | Clytia hemisphaerica | exon |
| TCONS_00012990-exon-sc0000161-1491911889:400243..400276 | TCONS_00012990-exon-sc0000161-1491911889:400243..400276 | Clytia hemisphaerica | exon |
| TCONS_00012990-exon-sc0000161-1510915933:400243..400276 | TCONS_00012990-exon-sc0000161-1510915933:400243..400276 | Clytia hemisphaerica | exon |
| TCONS_00012990-exon-sc0000161-1575043694:400243..400276 | TCONS_00012990-exon-sc0000161-1575043694:400243..400276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:397992..400276 + |
Blast
The following BLAST results are available for this feature:
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