TCONS_00012996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012996
Unique NameTCONS_00012996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012996 ID=TCONS_00012996|Name=TCONS_00012996|organism=Clytia hemisphaerica|type=transcript|length=440bp
CTACTATGATGGAAGTATAAATTCTGATGTTTTCTACTAGCTGGCAGGAA
ATCTAAAacttatgcaaaattaaaatctttaatTCATATCAGGCATCATA
TATGTAATTGATTCAAACGATAGAGAACGCATACAGGAAGCACAAGAGGT
CTTGAAAAACATGCTCAGCCAAGATGAGTTAACCGATGCTGCTTTACTGG
TTCTTGCTAATAAACAGGACTTGCCAAACGCACTGAGTGCATCACAAATC
ACTGAGAAATTAGGATTGCTCGACATTCGAAATCGAAGTTGGTATACACA
AGCTACTTGCGCGTCGAATGGTGATGGTCTCTATGAAGGACTTGATTGGC
TTTCTAAtgaaatgaagaaaagaaaagattactGAGTTGAGAGGTGATCA
AAGACTGGAGTAAACTTTCGAGTCGTATTGTAATGATATA
Run BLAST on NCBI

transcript from alignment at sc0000161:26947..28281-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012996 ID=TCONS_00012996|Name=TCONS_00012996|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at sc0000161:26947..28281- (Clytia hemisphaerica)
CTACTATGATGGAAGTATAAATTCTGATGTTTTCTACTAGCTGGCAGGAA
ATCTAAAACTTATGCAAAATTAAAATCTTTAATTCATATCAGGCATCATA
TATGTAATTGATTCAAACGATAGAGAACGCATACAGGAAGCACAAGAGGT
CTTGAAAAACATGCTCAGCCAAGATGAGTTAACCGATGCTGCTTTACTGG
TTCTTGCTAATAAACAGGTGAGTTTTCCACTCATTATTACCTTTCCAATG
GAACTGAAAATCCTGTCCTTTATAACTNCCGTCCATTATGGAGACATTAC
TTTCAAAATACACAAGGTAAGATGAACGTAATATAGTAATGTTTCAACGT
CCACTTAACGTTATATGAAGGAGGATATTATAGACATTATTTGTTTGGTG
AACAAATCAACACAAAAAGTGCTCGATACCAAAGATAGAGTTTCCATTAG
ATTAAAATCGTATATTTCTATGGCATGTTGTAAAAATTTGCAAATACTTT
ATTCGTCATATATCGTTACACATGGAGATATTATAGCCATATACACGTTG
TTTCATGCATACGTTTTCTACTAACCGGGGTCAATCTAAACAAGATTATA
TATACATCCTGATATCTTCCAAAATCTCTACTATGATGGAAGTATAAATT
CTGATGTTTTCTACTAGCTGGCAGGAAATCTAAAACTTATGCAAAATTAA
AATCTTTAATTCATATCAGGCATCATATATGTAATTGATTCAAACGATAG
AGAACGCATACAGGAAGCACAAGAGGTCTTGAAAAACATGCTCAGCCAAG
ATGAGTTAACCGATGCTGCTTTACTGGTTCTTGCTAATAAACAGGTGAGG
TTTCCACTCATTATTACCTTTCCAATGGAACTGAAAATCCTGTCCTTTAT
AACTTTTACTTTACTTGAACCATAAAAATCCTCTTATCTTCCTTGTTAAT
TAAAGATTAGAATTTAGAATGTTTAATTTCTTGAGAACAATGGCTTCAAC
AGTAAAGGGTCAGCCAGAACACTCCAGTCCTATCAATTTAGATTATATAA
TGAATAAAAATCTATGCCAATAAAAATCAACTAAAATCTAAAAACTTTAA
ACACTTTTTCAGGACTTGCCAAACGCACTGAGTGCATCACAAATCACTGA
GAAATTAGGATTGCTCGACATTCGAAATCGAAGTTGGTATACACAAGCTA
CTTGCGCGTCGAATGGTGATGGTCTCTATGAAGGACTTGATTGGCTTTCT
AATGAAATGAAGAAAAGAAAAGATTACTGAGTTGAGAGGTGATCAAAGAC
TGGAGTAAACTTTCGAGTCGTATTGTAATGATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007285XLOC_007285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012996-exon-sc0000161-1575043694:28065..28281TCONS_00012996-exon-sc0000161-1575043694:28065..28281Clytia hemisphaericaexon
TCONS_00012996-exon-sc0000161-1575043694:26947..27169TCONS_00012996-exon-sc0000161-1575043694:26947..27169Clytia hemisphaericaexon
TCONS_00012996-exon-sc0000161-1510915933:28065..28281TCONS_00012996-exon-sc0000161-1510915933:28065..28281Clytia hemisphaericaexon
TCONS_00012996-exon-sc0000161-1510915933:26947..27169TCONS_00012996-exon-sc0000161-1510915933:26947..27169Clytia hemisphaericaexon
TCONS_00012996-exon-sc0000161-1491911889:28065..28281TCONS_00012996-exon-sc0000161-1491911889:28065..28281Clytia hemisphaericaexon
TCONS_00012996-exon-sc0000161-1491911889:26947..27169TCONS_00012996-exon-sc0000161-1491911889:26947..27169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:26947..28281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.353589	0.532252	0.41817	0.850645	0.635874	0	2.64403	0	0.91989	2.27886	3.66238	3.34978	2.56955	2.63887	0.24353	1.40384	0	0	5.8021	7.58366	6.41368	3.57783	1.25163	3.65318	3.6277	16.924	0.612848	1.37955	9.79358	5.04505
Blast
[Close]
BLAST of TCONS_00012996 vs. Swiss-Prot (Human)
Match: ARF3 (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 3.474e-43
Identity = 63/95 (66.32%), Postives = 84/95 (88.42%), Query Frame = 2 
Query:   92 GIIYVIDSNDRERIQEAQEVLKNMLSQDELTDAALLVLANKQDLPNALSASQITEKLGLLDIRNRSWYTQATCASNGDGLYEGLDWLSNEMKKRK 376
            G+I+V+DSNDRER+ EA+E L  ML++DEL DA LLV ANKQDLPNA++A++IT+KLGL  +R+R+WY QATCA++GDGLYEGLDWL+N++K +K
Sbjct:   87 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF33.474e-4366.32ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
back to top