TCONS_00013053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013053
Unique NameTCONS_00013053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013053 ID=TCONS_00013053|Name=TCONS_00013053|organism=Clytia hemisphaerica|type=transcript|length=553bp
TTCACGCCTAGAAAAAAGTTGACACAAagtgaaaatgcaaaaaaaatgac
aagaataTTTATTACATAGAATAACTAAGAACAAAAGAgattcaaaaatt
acaaataagTCGGAAAATTGGGTCAAAGTAAagaaactcaataaatttga
tacaaattctaaaaaaaaattttgggctaAAATATCTTCTCATAGTTCTC
AACTAAAATATTACTTTaaataaaatcatcaaaaattatatgaaaaacaa
gacaaaaaatatcaaaaacaaataTCTGAAAGGAATTTAAGccaaaattt
tcgtttttttcttgCAAAACGTTTTGACAATTTGACGGTTGATAAAATTA
CCTTTTTGTTAATGCAGATTAAACTTCGGCAACACACAGCCCTATTTTTT
GAATGGTTACAAACGGTTGGTCAAGAAGACAAGGATATAAAGGTACGTGG
TTTCCCGTAtcaaaatgggctcttccagataATGTTCGTACAAcccgggt
ggaggatatattgtccgggggtagtgaaaaatcaccaaaatttgcCATGA
CCG
Run BLAST on NCBI

transcript from alignment at sc0000161:250411..250963

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013053 ID=TCONS_00013053|Name=TCONS_00013053|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at sc0000161:250411..250963 (Clytia hemisphaerica)
CGGTCATGgcaaattttggtgatttttcactacccccggacaatatatcc
tccacccgggTTGTACGAACATtatctggaagagcccattttgaTACGGG
AAACCACGTACCTTTATATCCTTGTCTTCTTGACCAACCGTTTGTAACCA
TTCAAAAAATAGGGCTGTGTGTTGCCGAAGTTTAATCTGCATTAACAAAA
AGGTAATTTTATCAACCGTCAAATTGTCAAAACGTTTTGcaagaaaaaaa
cgaaaattttggCTTAAATTCCTTTCAGAtatttgtttttgatatttttt
gtcttgtttttcatataatttttgatgattttatttAAAGTAATATTTTA
GTTGAGAACTATGAGAAGATATTTtagcccaaaatttttttttagaattt
gtatcaaatttattgagtttctTTACTTTGACCCAATTTTCCGActtatt
tgtaatttttgaatcTCTTTTGTTCTTAGTTATTCTATGTAATAAAtatt
cttgtcattttttttgcattttcactTTGTGTCAACTTTTTTCTAGGCGT
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007305XLOC_007305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013053-exon-sc0000161-1491911889:250411..250963TCONS_00013053-exon-sc0000161-1491911889:250411..250963Clytia hemisphaericaexon
TCONS_00013053-exon-sc0000161-1510915933:250411..250963TCONS_00013053-exon-sc0000161-1510915933:250411..250963Clytia hemisphaericaexon
TCONS_00013053-exon-sc0000161-1575043694:250411..250963TCONS_00013053-exon-sc0000161-1575043694:250411..250963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:250411..250963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.116772	0.114244	0	0	0	0	0.0869082	0.2153	0	0.068686	0	0	0.117125	0.125693	1.31617	2.14257	0	0	8.37604	4.96101	6.62201	6.98793	8.19397	9.19056	12.1618	14.3377	0.343409	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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