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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013072 ID=TCONS_00013072|Name=TCONS_00013072|organism=Clytia hemisphaerica|type=transcript|length=4363bpRun BLAST on NCBI transcript from alignment at sc0000162:87239..99316+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013072 ID=TCONS_00013072|Name=TCONS_00013072|organism=Clytia hemisphaerica|type=transcript|length=12078bp|location=Sequence derived from alignment at sc0000162:87239..99316+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013072 vs. Swiss-Prot (Human)
Match: OTOF (Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3) HSP 1 Score: 422.55 bits (1085), Expect = 5.286e-122 Identity = 391/1446 (27.04%), Postives = 655/1446 (45.30%), Query Frame = 2
Query: 503 EWQVCAYIHEARELVGSDISPKAEVKILQDFSLPKNVFTTSSMDKTNNPMWE----YPFNTSKESVLMEQFLDATFKISIYSGSNL------IGSCKFDLWTAYRQPGHCFIRKWVEIRD-KDMHDEKRGYVLLSLATFQQDGHHEEWLAP-CSSSTEKHDIQSNLLFP----MEEELCLYNVFIYEGEHLLNKNSSNPYLKVNYGSKSVSEITRIKEFKAEGSVSEENGKDTMK-------FHKRVSFVGYHPPRIQNMRIQVVNQRGPISNDQVVATASINMIQASFFXXXXXXXXXXXAFACDFGPTWLHLYGSCSES---DNKESINNGYGQGHMYNGRLLVRITTEQYGYAPLEELHKVQEIETKEQTRFHHST----KEFLLFATIFDANMIEFEKSHKHFHFELSIGHKREDNRGKASWQTDRYKPE----------------EISNNSQYCSLN--------------FNSEGHTHKPCMHLMTRLPDLLFRIKNNVLIKNIVMKFEEDV--VMALTKFEHRTDSKAKTECCTELEKIIHSSLNELRGILEE-----------KIQTDSHVNHNKLDVXXXXXXXXXXXXXXXXSDELIKSWNDRTF-EEIKFDMDFILDQLKILASEPQHSFPDVILLMCSDKEPIGYARIPVEEII-----SMDGSRGGFVRTILLRAFHGKKERHQD--LVKGKLEVRFWVGEDSNFSGKYLENIP-KLREVDLMETI-----PPSVLTYRNEHIHRYILRAYLYQGRTVLGSDSSGLSDPFVRLIFGQHVATTRIIDQTRSPVWNQMFHLDGIEMCQSEEELRRNKPVILLNVFDKDK-DKEEFLGHAAATPCIIGRAQRDKMKPS-PPKLQWFPITIGDKRYGEILACFELYSAGSSCIPQLPLAFRDKSLDGKTEQYLPLPKYIKPKMKSYRLEVLFWGVRELKKGKIFLPIKQPYVEADIGYKFELLSHNVGYTMKEVDKIRSKHCNNATNNPNFPLEAFIIDVQLPEDGLFLPTITFKVFEKNRLTDNETLIGTNTSPRISKFL-QDPHKYQYHFKDTDRMSRKITI-----DSTESFDEI-----KDSPNKTGFLGWFFSSNEKDVLXXXXXXXXXXXXXXXXXIV--------NQSQYDWWSRYYESIR--------------DLEDKE-----------------------------------------RKEEPNVPRIEIYQCELEKMFDDFSDFLTTFAIRTGK--QDETKNRGRDQIKGKFKASIRLWRKHQMKEN-------DHKYLINPRGTFQYPPSNKPKKILVRVYCVAAMDLNAQDSDGKADPYVQVKLGDCEAQESETFFN-TLNPEFGKCFEFTTAVLPFDNLLKIRVYDKDYRITKRLIGQTEIDIENRYFSKHRPTYGLAKRYFSSGFAQWRDSSKPSEIYEQI 4321
++QV + EAR+LVG ++ P V++ D TS + TN P + + F+ S + + D KIS+ NL +GS K D+ T Y QP H F KW + D D+ +GYV +A G + P ++ T++ DI+ NLL P E + + V IY E L N+S L N + E + + + + + GK +++ ++++V F PP + M++Q+ + ND + T I++ + S ND D F GP W+++YGS D + +N G G+G + RLL+ + E + EL E++ ++ T S +EF LF +A+MI+ K FE++IG+ + G + Q R + E E + S++ F+ KPC+++ + PD R+ N ++ +I K EE + + + K E + LRG+LEE + H + +LD + K ++ +++ ++ L T ++++ +F L +L+ LA EPQHS PD+ + M S+ + + YAR+P ++++ G V+T+ L+ GK+ V+ K+E+ W+G S ++L +P +EV + + PP L Y + + LRA++YQ R++ +DSSGLSDPF R+ F T ++++T P W+QM D +E+ ELR + P+I++ ++D+D K +F+G A P ++ A P PP+L+++ I G+ G++LA FEL G + LP + +D +P+P I+P + YR+EVLFWG+R+LK+ + + +P V+ + K ++S +N NPNF +V LPE+ L P + +V + R TL+G++ + +F+ + P + + T R+ R+ + S+ S E+ + P K + + V+K A + K K+K+ ++S DWWS+Y+ SI DLE+KE K++P + +++Y ELE FD+F D+L TF + GK DE + ++I G+FK S+ ++ K + E+ D Y G FQ PSN P +LVRVY V A DL+ D +GKADPY+ ++LG + ++ E + + LNP FGK F+ A P +++L + VYD D T LIG+T+ID+ENR++SKHR T G+A+ Y + G+ WRD KPS+I ++
Sbjct: 253 DYQVSITVIEARQLVGLNMDPVVCVEVGDDKKY------TSMKESTNCPYYNEYFVFDFHVSPDVMF-----DKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISSGLKGYVKCDVAVV---GKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTS---LMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDK--VNDVAIGTHFIDLRKIS--------NDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLLLGLAVEIVDTSN-PELTSSTEVQVEQATPISESCAGKMEEFFLFGAFLEASMIDRRNGDKPITFEVTIGNYGNEVDGLSRPQRPRPRKEPGDEEEVDLIQNASDDEAGDAGDLASVSSTPPMRPQVTDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDIQEMIKTEKSYPER------------------RLRGVLEELSCGCCRFLSLADKDQGHSSRTRLDRERLKSCMRELENMGQQARMLRAQVKRHTVRDKLRLCQNF-LQKLRFLADEPQHSIPDIFIWMMSNNKRVAYARVPSKDLLFSIVEEETGKDCAKVKTLFLK-LPGKRGFGSAGWTVQAKVELYLWLGL-SKQRKEFLCGLPCGFQEVKAAQGLGLHAFPPVSLVYTKKQA--FQLRAHMYQARSLFAADSSGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHELRDDPPIIVIEIYDQDSMGKADFMGRTFAKP-LVKMADEAYCPPRFPPQLEYYQIYRGNATAGDLLAAFELLQIGPAGKADLPPI--NGPVDVDRGPIMPVPMGIRPVLSKYRVEVLFWGLRDLKRVNL-AQVDRPRVDIECAGK----------------GVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPPLNIRVVD-CRAFGRYTLVGSHAVSSLRRFIYRPPDRSAPSWNTTVRLLRRCRVLCNGGSSSHSTGEVVVTMEPEVPIKKLETMVKLDATSEAVVKVDVAEEEKEKKKKKKGTAEEPEEEEPDESMLDWWSKYFASIDTMKEQLRQQEPSGIDLEEKEEVDNTEGLKGSMKGKEKARAAKEEKKKKTQSSGSGQGSEAPEKKKPKIDELKVYPKELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVY-KVPLPEDVSREAGYDSTY-----GMFQGIPSNDPINVLVRVYVVRATDLHPADINGKADPYIAIRLGKTDIRDKENYISKQLNPVFGKSFDI-EASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSTHGYNIWRDPMKPSQILTRL 1619 The following BLAST results are available for this feature:
BLAST of TCONS_00013072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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