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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013122 ID=TCONS_00013122|Name=TCONS_00013122|organism=Clytia hemisphaerica|type=transcript|length=1560bp
CGTTGTTATGTTTGTTTGTcatatgtttttgtttttttagggCTAAATAT
GAGAATAACAAGGcagaatataaaaaaattgaagactTCGACAGAGATGC
CAACAATGACATCCGGAAAGTTAAGAACGTCAGAAAGGCTGAGAATATCT
GAAAGGTTAAGGACagcagaaaaattgaaaacccCAGAAAAGCCAACACA
ATCAAGAACAAACATTTTTAATCTTCCACAAGAGATTGTTTTGATTATTG
CTGCCTATTTGAACCTCGATGATGTGAAAGAATTCAAATGCACTTGCAAA
TATTTCTATCAACTGATGGGGTGTAAGCCTGTCATGGGGCGTATGAAAGT
TATCCCTTCTGCTTTCCAAAACCAACTGTTAACATTTTTGACAAATAATA
TGGGTGGTAAATTTGTCTGCCTATATTTGACCAATATTGAACTTGATCAT
GTGAAAAAGATTTTACGAAATCAAGATGTGTTTTCAAATTGTATGTTGGC
TTGTGATCATATTAGTTTCTGGTCATTTTACCATGTCACCACTTCATGGA
CCAGATTTAAAATACCTTCCAAAGTGAAAAGTTTGAACTGCCAATTTACA
AACTTTGTGCCAATCGATGCATCTCATAAAAACTTAGATAAAGTGATCAT
TATCACCAAACAAGCAATCAAACTTGACAATGGTGCCATCCAAGTGTTGC
CAAATGACCCtgaaagtttgttttggacattgTACGCAAAGATCAAACAA
GGTATTATATCGGTGGAATCTGTCGATTACAAGTTTTTTCGTGTCCAATT
ATTCAATATGCCATATTGTACTATTTCAGGTTTTCTTGATACAGATATCA
ACGGTGTGGCTTGTTCCATATCAGAACTTTACATCAATGAACAAAACACC
ATCAAGTTAAAGGGCATCACTTGTCCACAAACCTTCAACAATAACAGACT
TGTTGCCCTCCTATCTAAAGTTCATAATTTGAAGACACTGGTACTTGAAC
ATCTCAATGACGTAACTGTTGATTTTATGGATGAAGTCGAATTTGAAAAT
ATGGACACGATGATTTTGAGAAGTtgtaaaagtctttcaaagtctaaTGT
TGATGAAAAGTTGAAAACTTTAGAATCGCAACCTTCTTATGATGTCGTGG
TACGCATGTAAAGTATTTTTCTTAAGGGGGATGGTTTTTagattcaaaat
ttcattgaagcCTCCCAGGAGTTTCATTTGAACTTGAACCTTTTAATAAG
CGAATGCCAGCTagcaaaaattatttgaaaagacTCCAGTAGCTTTAACG
AATgtgaaaatgaatcaaaattaaagtgCGACTTGTTAATGGTTGCAAAT
cattcaagaaatatttttgtttgacTAAAAATTGAACTCAAAAAAATGAA
TAGATCCATCCTGCCTCTGTGATCACAATATAATTATTGTCTGTTTAGGA
ATTTgtaaattattatatttttgtaactaaaaattattttctactCACAT
TGTTTAAAATATGTTTCAACCTTGCTCTTCCATTTCCTTCTCTTTCCTGG
TTCATGCTTT Run BLAST on NCBI transcript from alignment at sc0000162:366091..367983+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013122 ID=TCONS_00013122|Name=TCONS_00013122|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at sc0000162:366091..367983+ (Clytia hemisphaerica)
CGTTGTTATGTTTGTTTGTcatatgtttttgtttttttagggCTAAATAT
GAGAATAACAAGGcagaatataaaaaaattgaagactTCGACAGAGATGC
CAACAATGACATCCGGAAAGTTAAGAACGTCAGAAAGGCTGAGAATATCT
GAAAGGTTAAGGACagcagaaaaattgaaaacccCAGAAAAGCCAACACA
ATCAAGAACAAACATTTTTAATCTTCCACAAGAGATTGTTTTGATTATTG
CTGCCTATTTGAACCTCGATGATGTGAAAGAATTCAAATGCACTTGCAAA
TATTTCTATCAACTGATGGGGTGTAAGCCTGTCATGGGGCGTATGAAAGT
TATCCCTTCTGCTTTCCAAAACCAACTGTTAACATTTTTGACAAATAATA
TGGGTGGTAAATTTGTCTGCCTATATTTGACCAATATTGAACTTGATCAT
GTGAAAAAGATTTTACGGTATGGCCCTAATCTTACTGGATTAGGAATAAA
GATACAACATTTATACAAAGGCTTAGAGGAAGTTTGTCCCAATTTAGAAT
ATCTACAACTAGATATTTCAGAACCTTTTAAACATGCCGGTCGCAGAAAA
TtgtctttttatttcaattgtTTGTCAGAATTAGGAAACTTAAGTACCAT
AGTTTTGAGTGGAAAGTCCAACAATGATAACAACCCAGGTCTTTTACGAA
ATGAAGAGAGTATTTTCTCAAGTGATGCTATTCTGTCCATCATTGAACAT
ACACCACAGATCAAAGCAATCAAATTTCAACACATGCATCTTCTTGTTAG
AAATCAAGATGTGTTTTCAAATTGTATGTTGGCTTGTGATCATATTAGTT
TCTGGTCATTTTACCATGTCACCACTTCATGGACCAGATTTAAAATACCT
TCCAAAGTGAAAAGTTTGAACTGCCAATTTACAAACTTTGTGCCAATCGA
TGCATCTCATAAAAACTTAGATAAAGTGATCATTATCACCAAACAAGCAA
TCAAACTTGACAATGGTGCCATCCAAGTGTTGCCAAATGACCCtgaaagt
ttgttttggacattgTACGCAAAGATCAAACAAGGTATTATATCGGTGGA
ATCTGTCGATTACAAGTTTTTTCGTGTCCAATTATTCAATATGCCATATT
GTACTATTTCAGGTTTTCTTGATACAGATATCAACGGTGTGGCTTGTTCC
ATATCAGAACTTTACATCAATGAACAAAACACCATCAAGTTAAAGGGCAT
CACTTGTCCACAAACCTTCAACAATAACAGACTTGTTGCCCTCCTATCTA
AAGTTCATAATTTGAAGACACTGGTACTTGAACATCTCAATGACGTAACT
GTTGATTTTATGGATGAAGTCGAATTTGAAAATATGGACACGATGATTTT
GAGAAGTtgtaaaagtctttcaaagtctaaTGTTGATGAAAAGTTGAAAA
CTTTAGAATCGCAACCTTCTTATGATGTCGTGGTACGCATGTAAAGTATT
TTTCTTAAGGGGGATGGTTTTTagattcaaaatttcattgaagcCTCCCA
GGAGTTTCATTTGAACTTGAACCTTTTAATAAGCGAATGCCAGCTagcaa
aaattatttgaaaagacTCCAGTAGCTTTAACGAATgtgaaaatgaatca
aaattaaagtgCGACTTGTTAATGGTTGCAAATcattcaagaaatatttt
tgtttgacTAAAAATTGAACTCAAAAAAATGAATAGATCCATCCTGCCTC
TGTGATCACAATATAATTATTGTCTGTTTAGGAATTTgtaaattattata
tttttgtaactaaaaattattttctactCACATTGTTTAAAATATGTTTC
AACCTTGCTCTTCCATTTCCTTCTCTTTCCTGGTTCATGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013122-exon-sc0000162-1491911889:366091..366557 | TCONS_00013122-exon-sc0000162-1491911889:366091..366557 | Clytia hemisphaerica | exon |
| TCONS_00013122-exon-sc0000162-1510915933:366091..366557 | TCONS_00013122-exon-sc0000162-1510915933:366091..366557 | Clytia hemisphaerica | exon |
| TCONS_00013122-exon-sc0000162-1575043694:366091..366557 | TCONS_00013122-exon-sc0000162-1575043694:366091..366557 | Clytia hemisphaerica | exon |
| TCONS_00013122-exon-sc0000162-1491911889:366891..367983 | TCONS_00013122-exon-sc0000162-1491911889:366891..367983 | Clytia hemisphaerica | exon |
| TCONS_00013122-exon-sc0000162-1510915933:366891..367983 | TCONS_00013122-exon-sc0000162-1510915933:366891..367983 | Clytia hemisphaerica | exon |
| TCONS_00013122-exon-sc0000162-1575043694:366891..367983 | TCONS_00013122-exon-sc0000162-1575043694:366891..367983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:366091..367983 + |
Blast
The following BLAST results are available for this feature:
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