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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013125 ID=TCONS_00013125|Name=TCONS_00013125|organism=Clytia hemisphaerica|type=transcript|length=1475bp
ATCTTCTCATAACTTACTacatcttgtttttttttcagtgtcaaaaaatg
aaaaagatgaaattaCAACAATTGCCAATACCAGTTCTGTCCTTCTGATT
GCATTATTGTTGCCAACAAAAGATGTTTTGAATTTCCCAAGGTTGAAGAA
TTGCTATTCACCATAGTTAGGCTGTAGTTttattcatttcaaatttcatt
tcgttATTTGTTTGGGGAAGGAAGAAAGTACTCGATGCCAATAATANTGA
TAGTTAGGCTGTACTTttattcatttcaaatttcataTCGTTATTTGTTT
GGGGAAGGAATCAACACAGAAAGTACTCGATGCCAATAATAGAGCTTCGA
TTAAAATCCATATACTTCTATGACAAAATTGACATTGCAATTTTCTTGGA
AGTTTAATCATAGGTTGATTTCTTTGTTTACAGGGGAAGATGGATAAAAT
AAAACTTCAGAAATTGCCGATACCAATTTTGTGCATGATTGCGTCCTTGC
TGCCTACAAgtgatgttttgaattttcgtctgAACTGTCCAGTGTCAAAG
ATTTATCATTAAAATGCCAAGGACAGTCTTATAAGTCAAACCTTATCCAA
ATTATAATCAAATCCCTGaaaaatgttcgaaaaattCACTTGGAATCCCT
TATCGTTAATAACTCGGCACATTTTGAtgaatttaaagattttctatCAT
CTTGTCGCACCATAACCTCCTGGAGTTTTTTCGATGTTCGACTGGTGAAG
AAAGGAGTTCGTCTACCGGAGACTGTGACAAACTATGAGTGCACCAAATG
TATATTTTCGTTAATTGATAAACAACATTGCTCGTTACAAAGACTTAAAC
TAGCATCTCTAGTACCGTATGTTGataaaatttggaaagaaaatagtttt
CGTGATTTACGATATTTAGAACTTCAAAATTGTTTCTTCTATTTCAACCC
ATTGGAAAGCTGCAAGAAGTTGCATACTTTGAAATTGTTGAGATGTCATC
TACCGTTCTATTATTTAATGAAATTATCAACAAATGTTAAAGATAATTTG
AAGGAGCTGACCATACAGTCGCATAAAGACTTCAAGGATGAAATGCTTCT
CGAAGTACTGAACTCTTTCAAAAGTTTGACAAGGCTAACGCTGATTAATA
TGAATCTGCTCACACCGAGTTTCTTAACTAAAATCAAACTTTcgaaatta
aaattcatttttataaaGGACAGTCTTAATTTTAATACTCGAGAATTTAG
GGACCATATTGAAACgatgaaaaatgaattatcaTTTACAGTAGTATTAG
TGAACGACTCGAAAAATGTAAAATCTTCAATTCTAAAACTATAGTCAggg
aaattttagttttagaaaaacttttataacattttttaccAGCtagattt
tttatgttttcttaaattttgatagattcaattcaattcaattctaCTAT
GAAATATCAATTCCATACACATCAt Run BLAST on NCBI transcript from alignment at sc0000162:368091..369914+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013125 ID=TCONS_00013125|Name=TCONS_00013125|organism=Clytia hemisphaerica|type=transcript|length=1824bp|location=Sequence derived from alignment at sc0000162:368091..369914+ (Clytia hemisphaerica)
ATCTTCTCATAACTTACTacatcttgtttttttttcagtgtcaaaaaatg
aaaaagatgaaattaCAACAATTGCCAATACCAGTTCTGTCCTTCTGATT
GCATTATTGTTGCCAACAAAAGATGTTTTGAATTTCCCAAGGTTGAAGAA
TTGCTATTCACCATAGTTAGGCTGTAGTTttattcatttcaaatttcatt
tcgttATTTGTTTGGGGAAGGAAGAAAGTACTCGATGCCAATAATANTGA
TAGTTAGGCTGTACTTttattcatttcaaatttcataTCGTTATTTGTTT
GGGGAAGGAATCAACACAGAAAGTACTCGATGCCAATAATAGAGCTTCGA
TTAAAATCCATATACTTCTATGACAAAATTGACATTGCAATTTTCTTGGA
AGTTTAATCATAGGTTGATTTCTTTGTTTACAGGGGAAGATGGATAAAAT
AAAACTTCAGAAATTGCCGATACCAATTTTGTGCATGATTGCGTCCTTGC
TGCCTACAAgtgatgttttgaattttcgtctggtatgcaaaatattttat
gaagTGACGTTATGTAGAGAAGTATTAAAACAAATCAAAGTAAAGGCAAG
AAATCGAAGTTACAAgccttttaaaaagtttttaacggAATCGTTATCTG
GTGGAAGGTTTATTCATCTAGATTTGTTTTTAGCTACTGGAGCCACCATa
gcaaatattttaaatcttaCACCAAATGTTAATAATCTAATCATCAATAT
CAAAGATATAAAATGCTTCAAAAGTCAAAAGCTTGATTATCTTCATGCTT
TAGTTTTGGTCGATAAAGATCTAATGTACTTTGATAAAATACCCGAatct
aaatattcaaaatattttcaaccgcTTTCAGAACTGTCCAGTGTCAAAGA
TTTATCATTAAAATGCCAAGGACAGTCTTATAAGTCAAACCTTATCCAAA
TTATAATCAAATCCCTGaaaaatgttcgaaaaattCACTTGGAATCCCTT
ATCGTTAATAACTCGGCACATTTTGAtgaatttaaagattttctatCATC
TTGTCGCACCATAACCTCCTGGAGTTTTTTCGATGTTCGACTGGTGAAGA
AAGGAGTTCGTCTACCGGAGACTGTGACAAACTATGAGTGCACCAAATGT
ATATTTTCGTTAATTGATAAACAACATTGCTCGTTACAAAGACTTAAACT
AGCATCTCTAGTACCGTATGTTGataaaatttggaaagaaaatagttttC
GTGATTTACGATATTTAGAACTTCAAAATTGTTTCTTCTATTTCAACCCA
TTGGAAAGCTGCAAGAAGTTGCATACTTTGAAATTGTTGAGATGTCATCT
ACCGTTCTATTATTTAATGAAATTATCAACAAATGTTAAAGATAATTTGA
AGGAGCTGACCATACAGTCGCATAAAGACTTCAAGGATGAAATGCTTCTC
GAAGTACTGAACTCTTTCAAAAGTTTGACAAGGCTAACGCTGATTAATAT
GAATCTGCTCACACCGAGTTTCTTAACTAAAATCAAACTTTcgaaattaa
aattcatttttataaaGGACAGTCTTAATTTTAATACTCGAGAATTTAGG
GACCATATTGAAACgatgaaaaatgaattatcaTTTACAGTAGTATTAGT
GAACGACTCGAAAAATGTAAAATCTTCAATTCTAAAACTATAGTCAggga
aattttagttttagaaaaacttttataacattttttaccAGCtagatttt
ttatgttttcttaaattttgatagattcaattcaattcaattctaCTATG
AAATATCAATTCCATACACATCAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013125-exon-sc0000162-1491911889:368091..368622 | TCONS_00013125-exon-sc0000162-1491911889:368091..368622 | Clytia hemisphaerica | exon |
| TCONS_00013125-exon-sc0000162-1510915933:368091..368622 | TCONS_00013125-exon-sc0000162-1510915933:368091..368622 | Clytia hemisphaerica | exon |
| TCONS_00013125-exon-sc0000162-1575043694:368091..368622 | TCONS_00013125-exon-sc0000162-1575043694:368091..368622 | Clytia hemisphaerica | exon |
| TCONS_00013125-exon-sc0000162-1491911889:368972..369914 | TCONS_00013125-exon-sc0000162-1491911889:368972..369914 | Clytia hemisphaerica | exon |
| TCONS_00013125-exon-sc0000162-1510915933:368972..369914 | TCONS_00013125-exon-sc0000162-1510915933:368972..369914 | Clytia hemisphaerica | exon |
| TCONS_00013125-exon-sc0000162-1575043694:368972..369914 | TCONS_00013125-exon-sc0000162-1575043694:368972..369914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:368091..369914 + |
Blast
The following BLAST results are available for this feature:
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